Wall clock time and date at job start Tue Mar 31 2020 18:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 C 1.50697 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.38030 * 119.51683 * 125.25665 * 4 3 2 6 6 C 1.39920 * 119.13019 * 180.22772 * 5 4 3 7 7 C 1.48162 * 120.88966 * 179.79387 * 6 5 4 8 8 O 1.21511 * 120.00442 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99911 * 179.71966 * 7 6 5 10 10 C 1.46499 * 119.99971 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.88910 * 54.29775 * 11 10 9 13 13 C 1.55157 * 111.00627 * 178.17878 * 11 10 9 14 14 C 1.54324 * 102.94267 * 153.57245 * 13 11 10 15 15 N 1.47019 * 107.27545 * 337.80981 * 14 13 11 16 16 C 1.36933 * 125.65231 * 178.96788 * 15 14 13 17 17 H 1.07998 * 119.99766 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99836 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99846 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46992 * 60.00240 * 20 18 16 22 22 H 1.48497 * 109.47080 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47413 * 300.00142 * 20 18 16 24 24 C 1.47471 * 108.71880 * 358.97347 * 15 14 13 25 25 C 1.39610 * 118.21946 * 359.52527 * 6 5 4 26 26 C 1.38853 * 118.95217 * 0.24240 * 25 6 5 27 27 O 1.35682 * 119.62456 * 180.02562 * 26 25 6 28 28 N 1.31883 * 119.50918 * 304.99698 * 4 3 2 29 29 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47423 * 300.00096 * 1 2 3 31 31 H 1.08997 * 109.47274 * 60.00139 * 1 2 3 32 32 H 1.09002 * 109.46927 * 239.99909 * 2 1 3 33 33 H 1.08997 * 109.47274 * 119.99861 * 2 1 3 34 34 H 1.08998 * 109.47809 * 59.99900 * 3 2 1 35 35 H 1.09006 * 109.47201 * 299.99850 * 3 2 1 36 36 H 1.07993 * 120.43054 * 359.97438 * 5 4 3 37 37 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 39 39 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 40 40 H 1.08996 * 110.72084 * 271.94094 * 13 11 10 41 41 H 1.09008 * 110.71780 * 35.03904 * 13 11 10 42 42 H 1.09001 * 109.87940 * 97.22706 * 14 13 11 43 43 H 1.08997 * 109.88351 * 218.23594 * 14 13 11 44 44 H 0.96996 * 119.99731 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.34840 * 265.25308 * 24 15 14 46 46 H 1.08999 * 110.40840 * 142.91300 * 24 15 14 47 47 H 1.08001 * 120.52954 * 180.27439 * 25 6 5 48 48 H 0.96705 * 113.99797 * 90.00932 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2265 2.1361 -0.9816 6 6 5.6256 2.1268 -0.9773 7 6 6.3944 2.8540 -2.0143 8 8 5.8101 3.4691 -2.8843 9 7 7.7419 2.8376 -1.9898 10 6 8.5020 3.5572 -3.0148 11 6 9.9997 3.3778 -2.7590 12 1 10.2589 2.3212 -2.6929 13 6 10.8398 4.0892 -3.8524 14 6 12.1635 4.4010 -3.1230 15 7 11.8767 4.4062 -1.6810 16 6 12.7920 4.6236 -0.6860 17 1 12.4798 4.6073 0.3478 18 6 14.1210 4.8650 -1.0061 19 7 14.5014 4.8844 -2.2659 20 14 15.3694 5.1623 0.3513 21 1 15.4247 3.9751 1.2416 22 1 16.7079 5.3929 -0.2491 23 1 14.9682 6.3545 1.1404 24 6 10.4401 4.1384 -1.4833 25 6 6.2780 1.4185 0.0336 26 6 5.5178 0.7517 0.9852 27 8 6.1376 0.0596 1.9740 28 7 4.1969 0.7842 0.9392 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.6853 2.6754 -1.7449 37 1 8.2084 2.3494 -1.2934 38 1 8.2516 3.1600 -3.9985 39 1 8.2508 4.6172 -2.9763 40 1 11.0131 3.4247 -4.6988 41 1 10.3505 5.0071 -4.1784 42 1 12.9024 3.6328 -3.3512 43 1 12.5363 5.3773 -3.4326 44 1 15.4300 5.0534 -2.4896 45 1 9.8893 5.0744 -1.3905 46 1 10.2871 3.5181 -0.6001 47 1 7.3568 1.3900 0.0752 48 1 6.3168 0.5826 2.7675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028854112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:56 Heat of formation + Delta-G solvation = -30.112164 kcal Electronic energy + Delta-G solvation = -27768.487107 eV Core-core repulsion = 23823.872184 eV Total energy + Delta-G solvation = -3944.614922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16522 -39.58308 -37.81051 -37.56521 -35.26312 -34.84322 -33.08030 -32.37243 -31.00721 -29.85095 -28.39168 -27.31247 -25.94639 -24.68675 -23.31703 -23.18847 -21.84770 -20.69085 -20.03888 -19.87959 -18.93952 -17.48105 -17.31505 -16.83071 -16.06012 -15.97077 -15.75306 -15.41840 -15.18806 -14.74897 -14.72576 -14.54130 -14.03716 -13.86846 -13.58858 -13.27177 -13.00581 -12.68393 -12.42189 -12.39868 -12.10318 -12.06651 -11.82850 -11.78839 -11.53104 -11.46329 -11.04748 -10.94802 -10.81667 -10.63448 -10.33247 -10.21939 -10.17075 -10.02099 -9.92019 -9.72046 -9.68448 -9.19914 -9.13857 -8.63598 -6.87832 -5.74954 -3.08873 0.34052 0.58044 2.57657 2.89507 3.14309 3.37565 3.41871 3.42810 3.43328 4.03028 4.25608 4.45739 4.54068 4.58431 4.69451 4.71920 4.79750 5.00112 5.02436 5.14698 5.18128 5.24641 5.34892 5.38870 5.41207 5.48933 5.49321 5.60684 5.67300 5.70109 5.81540 5.86503 5.95524 5.97748 5.98417 6.05740 6.26051 6.28299 6.42466 6.47534 6.60631 6.83791 7.09791 7.31366 7.50755 7.51431 7.58694 7.78725 7.96760 8.22082 9.18089 9.78401 10.44169 11.36644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002141 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.212990 B =13075.413927 C =14245.571573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.151 3.849 5 C -0.125 4.125 6 C -0.065 4.065 7 C 0.555 3.445 8 O -0.530 6.530 9 N -0.713 5.713 10 C 0.131 3.869 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.605 5.605 16 C -0.231 4.231 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 C -0.161 4.161 26 C 0.315 3.685 27 O -0.479 6.479 28 N -0.486 5.486 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.403 0.597 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.035 0.965 47 H 0.147 0.853 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.779 -8.371 3.605 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.014 3.986 5 C -0.146 4.146 6 C -0.075 4.075 7 C 0.341 3.659 8 O -0.407 6.407 9 N -0.364 5.364 10 C 0.008 3.992 11 C -0.139 4.139 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.052 3.948 15 N -0.332 5.332 16 C -0.359 4.359 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.015 3.985 25 C -0.183 4.183 26 C 0.136 3.864 27 O -0.286 6.286 28 N -0.206 5.206 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.170 0.830 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.053 0.947 47 H 0.165 0.835 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -24.335 -8.782 3.238 26.073 hybrid contribution 1.691 0.665 0.841 2.002 sum -22.643 -8.118 4.079 24.398 Atomic orbital electron populations 1.21782 0.95471 1.01852 1.01865 1.21451 0.95694 0.95389 1.03018 1.20652 0.87526 0.98827 1.03745 1.20997 0.96742 0.91603 0.89292 1.22134 0.93187 0.99630 0.99621 1.20326 0.94408 0.97516 0.95293 1.18078 0.82424 0.80852 0.84563 1.90783 1.69678 1.43156 1.37131 1.46011 1.05616 1.53057 1.31751 1.21502 0.90390 0.96871 0.90400 1.22637 0.91580 1.00775 0.98911 0.90114 1.22860 0.98421 0.99131 0.96909 1.21146 0.90646 1.00629 0.82331 1.44467 1.02211 1.83981 1.02531 1.18995 0.88006 1.41913 0.87023 0.90548 1.24813 0.97139 1.01990 0.96486 1.69950 1.16211 1.55561 1.15146 0.86193 0.80700 0.78062 0.80752 1.21166 1.21564 1.21176 1.21584 0.87114 0.95710 0.94051 1.22347 1.02009 0.97707 0.96200 1.18939 0.86648 0.90515 0.90319 1.84809 1.76873 1.39350 1.27557 1.66786 1.09921 1.18090 1.25808 0.92585 0.92592 0.92651 0.92076 0.90767 0.89537 0.89711 0.83045 0.76176 0.91243 0.90906 0.91908 0.92134 0.93517 0.93843 0.93662 0.96286 0.94717 0.83513 0.73834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.82 5.79 -26.73 -0.15 -0.98 16 3 C -0.07 -0.48 5.61 -27.88 -0.16 -0.64 16 4 C 0.15 1.44 6.18 -82.65 -0.51 0.93 16 5 C -0.13 -1.27 9.27 -39.03 -0.36 -1.63 16 6 C -0.06 -0.71 5.91 -104.68 -0.62 -1.33 16 7 C 0.56 7.25 7.80 -12.18 -0.09 7.15 16 8 O -0.53 -8.50 16.44 5.36 0.09 -8.42 16 9 N -0.71 -8.65 5.41 -61.15 -0.33 -8.98 16 10 C 0.13 1.79 5.12 -4.05 -0.02 1.77 16 11 C -0.12 -1.88 3.07 -88.47 -0.27 -2.15 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16 14 C 0.18 4.18 5.37 -3.07 -0.02 4.16 16 15 N -0.61 -15.01 3.40 -170.04 -0.58 -15.58 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 20 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.73 6.56 -2.50 -0.02 2.71 16 25 C -0.16 -1.57 9.55 -38.84 -0.37 -1.94 16 26 C 0.31 3.24 7.74 -17.16 -0.13 3.10 16 27 O -0.48 -4.28 13.56 -18.75 -0.25 -4.53 16 28 N -0.49 -5.23 9.87 -9.59 -0.09 -5.33 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 36 H 0.15 1.41 7.62 -52.49 -0.40 1.01 16 37 H 0.40 4.17 6.57 -40.82 -0.27 3.91 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.00 8.04 -51.92 -0.42 0.59 16 42 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 43 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.15 1.18 6.53 -52.49 -0.34 0.84 16 48 H 0.40 1.66 9.06 45.56 0.41 2.08 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -33.76 393.84 -9.24 -43.00 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.79 Total: 1.90 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.77 Total: 1.40 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.43 Total: -56.05 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.17 Total: -12.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.76 -9.24 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028854112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.887 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds