Wall clock time and date at job start Tue Mar 31 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46863 * 2 1 4 4 O 1.34253 * 126.52487 * 270.15651 * 3 2 1 5 5 C 1.34048 * 108.22878 * 180.23016 * 4 3 2 6 6 N 1.29936 * 109.24278 * 359.77100 * 5 4 3 7 7 C 1.36066 * 108.47584 * 0.02562 * 6 5 4 8 8 C 1.47424 * 126.44818 * 179.97438 * 7 6 5 9 9 O 1.21618 * 119.99684 * 173.85550 * 8 7 6 10 10 N 1.34765 * 120.00080 * 353.85455 * 8 7 6 11 11 C 1.46941 * 120.55402 * 172.82736 * 10 8 7 12 12 C 1.53338 * 108.68312 * 125.67476 * 11 10 8 13 13 C 1.52103 * 109.44908 * 53.30473 * 12 11 10 14 14 C 1.54391 * 110.50715 * 64.08959 * 13 12 11 15 15 C 1.54450 * 102.87084 * 83.33366 * 14 13 12 16 16 N 1.47074 * 107.29744 * 21.50650 * 15 14 13 17 17 C 1.36940 * 125.62957 * 180.96619 * 16 15 14 18 18 H 1.07997 * 120.00413 * 186.45863 * 17 16 15 19 19 C 1.38820 * 119.99806 * 6.45657 * 17 16 15 20 20 N 1.31615 * 119.99951 * 7.78514 * 19 17 16 21 21 Si 1.86800 * 119.99974 * 187.78426 * 19 17 16 22 22 H 1.48499 * 109.47321 * 265.02694 * 21 19 17 23 23 H 1.48503 * 109.46911 * 25.02765 * 21 19 17 24 24 H 1.48498 * 109.46754 * 145.02220 * 21 19 17 25 25 C 1.47575 * 108.74583 * 1.22970 * 16 15 14 26 26 C 1.52109 * 111.59942 * 300.69552 * 13 12 11 27 27 C 1.46931 * 120.55568 * 352.85054 * 10 8 7 28 28 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47333 * 300.00462 * 1 2 3 30 30 H 1.09004 * 109.47195 * 60.00172 * 1 2 3 31 31 H 1.08997 * 109.47512 * 240.00042 * 2 1 3 32 32 H 1.08995 * 109.46958 * 119.99293 * 2 1 3 33 33 H 1.07996 * 125.38230 * 179.73133 * 5 4 3 34 34 H 1.08996 * 109.60233 * 5.91332 * 11 10 8 35 35 H 1.09000 * 109.73355 * 245.50788 * 11 10 8 36 36 H 1.09001 * 109.47606 * 293.30994 * 12 11 10 37 37 H 1.09002 * 109.47870 * 173.30056 * 12 11 10 38 38 H 1.09007 * 110.73467 * 324.98516 * 14 13 12 39 39 H 1.09001 * 110.73071 * 201.68305 * 14 13 12 40 40 H 1.09003 * 109.88144 * 262.08071 * 15 14 13 41 41 H 1.09006 * 109.87949 * 140.93424 * 15 14 13 42 42 H 0.97001 * 119.99845 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.37592 * 95.25669 * 25 16 15 44 44 H 1.08992 * 110.37823 * 217.60681 * 25 16 15 45 45 H 1.09004 * 109.47418 * 179.28820 * 26 13 12 46 46 H 1.08996 * 109.47276 * 299.30402 * 26 13 12 47 47 H 1.09003 * 109.59544 * 354.08828 * 27 10 8 48 48 H 1.09002 * 109.60232 * 114.56054 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2958 2.1752 -1.0789 5 6 2.7259 3.3731 -0.6581 6 7 2.7348 3.3927 0.6411 7 6 2.3028 2.1844 1.0936 8 6 2.1595 1.7772 2.5032 9 8 1.6561 0.7048 2.7782 10 7 2.5864 2.5933 3.4871 11 6 2.3101 2.2745 4.8946 12 6 3.6353 2.2683 5.6661 13 6 4.3657 3.5811 5.4286 14 6 3.5553 4.7627 6.0039 15 6 3.9551 4.7601 7.4957 16 7 5.2396 4.0519 7.6031 17 6 5.9262 3.8165 8.7643 18 1 6.9128 3.3787 8.7291 19 6 5.3539 4.1406 9.9868 20 7 4.0978 4.5295 10.0430 21 14 6.3666 4.0246 11.5522 22 1 6.1361 2.7056 12.1943 23 1 7.8071 4.1692 11.2216 24 1 5.9617 5.1068 12.4849 25 6 5.6697 3.6424 6.2521 26 6 4.6546 3.8020 3.9517 27 6 3.3354 3.8170 3.1702 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.0193 4.1922 -1.2978 34 1 1.8431 1.2920 4.9621 35 1 1.6440 3.0260 5.3183 36 1 4.2538 1.4404 5.3193 37 1 3.4353 2.1511 6.7312 38 1 2.4853 4.5881 5.8907 39 1 3.8471 5.6988 5.5277 40 1 3.1961 4.2419 8.0819 41 1 4.0657 5.7844 7.8516 42 1 3.6980 4.7563 10.8972 43 1 6.3528 4.3803 5.8313 44 1 6.1433 2.6613 6.2856 45 1 5.1659 4.7556 3.8200 46 1 5.2876 2.9959 3.5807 47 1 3.5442 3.8513 2.1009 48 1 2.7494 4.6896 3.4588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035168906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:29 Heat of formation + Delta-G solvation = 21.509300 kcal Electronic energy + Delta-G solvation = -29813.503992 eV Core-core repulsion = 25871.127544 eV Total energy + Delta-G solvation = -3942.376448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.76782 -40.21355 -38.50772 -35.87037 -35.13114 -34.37630 -32.94263 -30.98347 -30.70073 -29.47683 -28.64859 -26.78530 -24.97964 -24.17784 -23.72722 -23.10754 -22.32391 -21.59595 -20.11320 -19.89423 -18.32345 -17.38680 -17.11803 -16.70159 -16.36790 -15.90419 -15.23427 -15.00985 -14.92300 -14.75045 -14.53490 -13.89451 -13.85516 -13.63279 -13.49158 -13.23295 -12.92935 -12.75186 -12.61323 -12.09882 -11.99873 -11.86187 -11.65373 -11.56292 -11.45820 -11.19329 -11.01576 -10.82839 -10.75541 -10.52203 -10.34453 -10.10808 -10.01628 -9.87315 -9.68948 -9.58560 -9.33954 -9.23512 -8.56255 -8.38966 -6.74088 -5.64092 -2.99896 0.85877 1.77537 2.25532 3.00984 3.20064 3.42703 3.48325 3.50262 3.75046 4.27876 4.46691 4.54813 4.74387 4.89363 4.97954 5.10019 5.13688 5.22640 5.24365 5.38768 5.46982 5.52487 5.54891 5.55250 5.59192 5.64255 5.77477 5.83549 5.91032 5.93982 6.04614 6.13114 6.16143 6.24646 6.32340 6.39739 6.42574 6.57629 6.62819 6.71698 6.79437 6.92906 7.06197 7.14366 7.51454 7.55525 7.72733 7.89427 8.13684 8.33678 9.27370 9.88802 10.56161 11.44714 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.002637 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.713339 B =10616.621362 C =11072.616782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.043 3.957 4 O -0.199 6.199 5 C 0.172 3.828 6 N -0.457 5.457 7 C -0.067 4.067 8 C 0.597 3.403 9 O -0.542 6.542 10 N -0.586 5.586 11 C 0.111 3.889 12 C -0.108 4.108 13 C -0.072 4.072 14 C -0.134 4.134 15 C 0.172 3.828 16 N -0.603 5.603 17 C -0.225 4.225 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.115 4.115 27 C 0.081 3.919 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.023 0.977 42 H 0.251 0.749 43 H 0.018 0.982 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.133 0.867 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -4.034 -24.669 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.013 4.013 4 O -0.085 6.085 5 C -0.056 4.056 6 N -0.187 5.187 7 C -0.186 4.186 8 C 0.384 3.616 9 O -0.420 6.420 10 N -0.316 5.316 11 C -0.010 4.010 12 C -0.146 4.146 13 C -0.073 4.073 14 C -0.173 4.173 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.354 4.354 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.208 1.208 24 H -0.217 1.217 25 C 0.019 3.981 26 C -0.153 4.153 27 C -0.041 4.041 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.270 0.730 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.944 -4.043 -23.906 24.963 hybrid contribution 0.539 -0.053 0.508 0.742 sum -5.405 -4.096 -23.398 24.361 Atomic orbital electron populations 1.21701 0.92986 1.02929 1.02500 1.20359 0.97198 0.85335 1.05271 1.23798 0.98734 0.95552 0.83241 1.84370 1.63600 1.24239 1.36316 1.28197 0.98676 0.87095 0.91592 1.70606 1.17577 1.21075 1.09411 1.21548 1.10080 0.91284 0.95708 1.16774 0.78623 0.83686 0.82525 1.90765 1.46528 1.21820 1.82922 1.47922 1.53631 1.23883 1.06207 1.21816 0.98134 1.02196 0.78895 1.21595 0.94919 0.96755 1.01333 1.21089 0.97415 0.95304 0.93481 1.22883 0.98567 0.96404 0.99399 1.21232 0.88662 0.96018 0.89330 1.44505 1.22469 1.65146 1.00753 1.19041 0.97735 1.35627 0.82992 0.90693 1.24784 0.96176 1.02162 0.97414 1.69958 1.11065 1.51730 1.23917 0.86150 0.79266 0.77209 0.83448 1.21723 1.20755 1.21727 1.21539 0.93102 0.96963 0.86454 1.21733 0.96693 1.01891 0.95032 1.22689 0.91989 0.85438 1.03995 0.91061 0.91541 0.92736 0.89818 0.86615 0.72977 0.89280 0.90942 0.92343 0.89295 0.92253 0.92752 0.91926 0.95894 0.93904 0.96472 0.94597 0.90857 0.92352 0.85037 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.04 -0.38 5.87 -27.88 -0.16 -0.55 16 3 C 0.04 0.45 6.69 -35.08 -0.23 0.22 16 4 O -0.20 -1.74 10.73 6.53 0.07 -1.67 16 5 C 0.17 1.26 13.19 51.96 0.69 1.94 16 6 N -0.46 -4.95 7.80 -11.48 -0.09 -5.04 16 7 C -0.07 -0.84 6.68 -83.02 -0.55 -1.39 16 8 C 0.60 8.84 7.67 -12.53 -0.10 8.74 16 9 O -0.54 -8.81 14.31 5.26 0.08 -8.74 16 10 N -0.59 -8.61 2.96 -173.84 -0.51 -9.12 16 11 C 0.11 1.72 6.13 -3.63 -0.02 1.69 16 12 C -0.11 -1.86 4.87 -27.01 -0.13 -1.99 16 13 C -0.07 -1.25 0.55 -153.99 -0.08 -1.33 16 14 C -0.13 -2.49 4.92 -25.24 -0.12 -2.62 16 15 C 0.17 4.18 5.08 -2.97 -0.02 4.16 16 16 N -0.60 -15.43 3.38 -170.18 -0.58 -16.00 16 17 C -0.23 -6.35 10.26 -15.05 -0.15 -6.50 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 19 C -0.01 -0.26 5.45 -17.43 -0.09 -0.36 16 20 N -0.92 -27.17 10.48 55.49 0.58 -26.59 16 21 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.15 3.05 6.16 -2.75 -0.02 3.03 16 26 C -0.11 -1.66 4.84 -27.01 -0.13 -1.79 16 27 C 0.08 1.09 5.85 -3.63 -0.02 1.07 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.17 6.63 -51.93 -0.34 0.83 16 33 H 0.25 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.09 1.40 6.99 -51.93 -0.36 1.03 16 35 H 0.07 1.11 6.55 -51.93 -0.34 0.76 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.77 7.82 -51.93 -0.41 1.37 16 38 H 0.06 1.03 6.18 -51.93 -0.32 0.71 16 39 H 0.05 0.95 7.98 -51.93 -0.41 0.54 16 40 H 0.06 1.69 6.84 -51.93 -0.36 1.33 16 41 H 0.02 0.61 8.01 -51.93 -0.42 0.20 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 44 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 45 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.13 1.67 4.05 -62.93 -0.25 1.41 16 48 H 0.06 0.88 7.62 -51.93 -0.40 0.48 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -33.07 370.48 -8.05 -41.13 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.37 Total: -0.47 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.79 Total: 3.56 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.60 Total: -56.75 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.15 Total: -10.41 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.07 -8.05 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035168906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.637 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds