Wall clock time and date at job start Tue Mar 31 2020 18:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47493 * 2 1 4 4 C 1.50704 * 109.47143 * 239.99976 * 2 1 3 5 5 C 1.38351 * 119.46164 * 84.72378 * 4 2 1 6 6 C 1.38359 * 119.30336 * 179.75142 * 5 4 2 7 7 C 1.40020 * 118.28810 * 0.51474 * 6 5 4 8 8 C 1.47844 * 120.55984 * 179.77508 * 7 6 5 9 9 O 1.21549 * 119.99724 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00022 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99986 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46983 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51221 * 60.00335 * 12 11 10 14 14 C 1.53294 * 109.50844 * 180.09992 * 12 11 10 15 15 N 1.47153 * 108.38375 * 172.22601 * 14 12 11 16 16 C 1.36930 * 120.98457 * 129.48602 * 15 14 12 17 17 H 1.08002 * 120.00248 * 333.61858 * 16 15 14 18 18 C 1.38811 * 120.00133 * 153.61107 * 16 15 14 19 19 N 1.31612 * 120.00246 * 343.17046 * 18 16 15 20 20 Si 1.86807 * 119.99930 * 163.17039 * 18 16 15 21 21 H 1.48498 * 109.46931 * 94.43189 * 20 18 16 22 22 H 1.48496 * 109.46978 * 214.43156 * 20 18 16 23 23 H 1.48497 * 109.47231 * 334.43176 * 20 18 16 24 24 C 1.47153 * 118.03497 * 309.46600 * 15 14 12 25 25 C 1.53296 * 108.38311 * 50.53394 * 24 15 14 26 26 O 1.42953 * 109.26659 * 307.72098 * 25 24 15 27 27 C 1.39522 * 118.88406 * 359.75057 * 7 6 5 28 28 N 1.31702 * 120.56340 * 359.97438 * 27 7 6 29 29 H 1.09001 * 109.47338 * 300.00108 * 1 2 3 30 30 H 1.08998 * 109.47409 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46874 * 59.99728 * 1 2 3 32 32 H 1.08998 * 109.47108 * 119.99870 * 2 1 3 33 33 H 1.09001 * 109.46917 * 59.99634 * 3 2 1 34 34 H 1.08998 * 109.47467 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47282 * 300.00021 * 3 2 1 36 36 H 1.08006 * 120.34556 * 0.03251 * 5 4 2 37 37 H 1.07999 * 120.85297 * 180.27402 * 6 5 4 38 38 H 0.97006 * 119.99702 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.46781 * 300.00482 * 11 10 8 40 40 H 1.09006 * 109.47013 * 59.99852 * 11 10 8 41 41 H 1.08996 * 109.68345 * 291.95184 * 14 12 11 42 42 H 1.09005 * 109.68037 * 52.46864 * 14 12 11 43 43 H 0.97001 * 120.00225 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.68394 * 170.25270 * 24 15 14 45 45 H 1.08994 * 109.68472 * 290.77725 * 24 15 14 46 46 H 1.09003 * 109.51145 * 67.62137 * 25 24 15 47 47 H 1.09006 * 109.51351 * 187.76811 * 25 24 15 48 48 H 1.07997 * 119.71823 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1547 -0.0109 -2.4178 6 6 2.6211 -0.6650 -3.5442 7 6 2.9427 -2.0236 -3.4371 8 6 3.4407 -2.7730 -4.6103 9 8 3.5735 -2.2100 -5.6793 10 7 3.7473 -4.0803 -4.4944 11 6 4.2402 -4.8229 -5.6570 12 6 4.5099 -6.2751 -5.2577 13 1 3.5870 -6.7317 -4.8999 14 6 5.0281 -7.0524 -6.4730 15 7 5.4553 -8.3867 -6.0228 16 6 5.0194 -9.5183 -6.6588 17 1 4.0769 -9.5124 -7.1861 18 6 5.7890 -10.6730 -6.6260 19 7 7.0588 -10.6082 -6.2859 20 14 5.0224 -12.3192 -7.0645 21 1 5.2626 -12.6101 -8.5007 22 1 5.6346 -13.3872 -6.2340 23 1 3.5608 -12.2687 -6.8073 24 6 6.3652 -8.4689 -4.8692 25 6 5.7817 -7.6225 -3.7321 26 8 5.4934 -6.3104 -4.2207 27 6 2.7857 -2.6582 -2.2046 28 7 2.3430 -1.9906 -1.1592 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.8932 1.0360 -2.4638 37 1 2.7306 -0.1422 -4.4828 38 1 3.6415 -4.5294 -3.6411 39 1 3.4914 -4.7972 -6.4487 40 1 5.1632 -4.3667 -6.0149 41 1 4.2329 -7.1514 -7.2118 42 1 5.8742 -6.5244 -6.9129 43 1 7.5965 -11.4152 -6.2626 44 1 6.4553 -9.5059 -4.5459 45 1 7.3464 -8.0845 -5.1474 46 1 4.8640 -8.0845 -3.3682 47 1 6.5046 -7.5574 -2.9188 48 1 3.0300 -3.7056 -2.1067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035402072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:29 Heat of formation + Delta-G solvation = -30.210074 kcal Electronic energy + Delta-G solvation = -28046.519297 eV Core-core repulsion = 24101.900129 eV Total energy + Delta-G solvation = -3944.619168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98720 -39.43734 -38.42951 -35.93532 -35.03461 -34.34028 -32.82522 -31.82745 -31.07851 -30.20058 -27.65615 -27.57094 -25.90570 -24.67282 -23.67659 -23.20069 -21.96668 -21.42729 -20.44263 -19.69903 -18.21728 -17.13527 -16.87117 -16.36165 -16.10422 -15.61473 -15.36586 -15.10071 -14.97860 -14.67517 -14.44241 -14.28240 -14.10522 -13.81208 -13.45794 -13.31790 -13.20448 -13.12802 -12.97313 -12.75906 -12.49906 -12.37983 -11.70388 -11.61454 -11.58632 -11.38740 -11.15812 -10.88844 -10.74739 -10.44881 -10.35325 -10.29839 -10.20438 -10.01329 -9.73271 -9.63574 -9.38353 -9.12081 -9.02281 -8.57866 -6.79276 -5.87867 -3.31599 0.35792 0.91223 2.70377 3.05208 3.31819 3.39262 3.41230 3.57004 3.71407 4.17687 4.23104 4.39821 4.48863 4.53853 4.65779 4.67820 4.74445 4.80828 5.07173 5.11927 5.19368 5.27339 5.29810 5.36596 5.42270 5.42928 5.48048 5.52104 5.68440 5.74294 5.77631 5.79957 5.82036 5.88224 5.99277 6.10966 6.22076 6.25022 6.32913 6.42496 6.44803 6.71144 7.06253 7.42624 7.48202 7.56644 7.67352 7.80333 8.10511 8.29690 9.07705 9.70426 10.27128 11.20317 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025617 B = 0.002011 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.740856 B =13922.378903 C =14294.139798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.155 3.845 5 C -0.179 4.179 6 C -0.015 4.015 7 C -0.188 4.188 8 C 0.561 3.439 9 O -0.540 6.540 10 N -0.712 5.712 11 C 0.131 3.869 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C 0.141 3.859 28 N -0.485 5.485 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 21.347 12.556 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.018 3.982 5 C -0.198 4.198 6 C -0.041 4.041 7 C -0.194 4.194 8 C 0.346 3.654 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.018 4.018 28 N -0.193 5.193 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.239 0.761 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.754 21.279 12.626 26.979 hybrid contribution -0.201 -1.100 -0.788 1.368 sum -10.955 20.179 11.838 25.833 Atomic orbital electron populations 1.21807 0.93298 1.02551 1.02283 1.20123 0.96399 0.95515 0.94913 1.21942 1.01525 0.94672 1.02497 1.21479 0.92193 0.89780 0.94796 1.21988 1.02854 1.01986 0.93018 1.21738 0.90602 0.92594 0.99200 1.21035 1.06540 0.96101 0.95692 1.18010 0.77810 0.81893 0.87644 1.90775 1.53878 1.68713 1.28451 1.45850 1.66082 1.09698 1.14647 1.21491 1.00027 0.90204 0.87577 1.22823 0.91820 0.93561 0.91414 0.92247 1.21438 0.98121 0.87731 0.93263 1.44060 1.55308 1.00089 1.32268 1.19186 1.00978 0.88337 1.30016 0.91340 1.25055 0.94788 0.99178 1.00628 1.70030 1.04882 1.27602 1.52126 0.86243 0.78721 0.83624 0.77966 1.21336 1.21466 1.20372 1.21445 0.91643 1.00039 0.85533 1.23333 0.99329 0.83469 0.97673 1.87775 1.60236 1.29199 1.53736 1.23012 0.91870 0.99847 0.87070 1.67525 1.11859 1.08514 1.31452 0.91663 0.92138 0.92401 0.88917 0.91616 0.92199 0.92027 0.83961 0.83451 0.76136 0.89896 0.90420 0.91725 0.95191 0.93477 0.88764 0.95334 0.94042 0.89978 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.18 37.16 0.34 -0.47 16 2 C -0.05 -0.34 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.73 8.62 37.16 0.32 -0.41 16 4 C 0.15 1.41 5.79 -82.51 -0.48 0.94 16 5 C -0.18 -1.49 9.16 -39.50 -0.36 -1.85 16 6 C -0.02 -0.15 9.72 -38.87 -0.38 -0.53 16 7 C -0.19 -2.17 5.89 -104.82 -0.62 -2.78 16 8 C 0.56 7.73 7.78 -12.33 -0.10 7.63 16 9 O -0.54 -9.11 16.42 5.32 0.09 -9.02 16 10 N -0.71 -9.27 5.40 -61.25 -0.33 -9.60 16 11 C 0.13 1.91 5.37 -4.04 -0.02 1.89 16 12 C 0.06 1.08 2.86 -26.58 -0.08 1.00 16 13 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 15 N -0.59 -14.59 3.05 -171.83 -0.52 -15.11 16 16 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 19 N -0.90 -25.72 11.15 55.49 0.62 -25.10 16 20 Si 0.91 21.22 29.59 -169.99 -5.03 16.19 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.05 10.14 -35.23 -0.36 -7.40 16 27 C 0.14 1.49 10.71 -17.13 -0.18 1.31 16 28 N -0.49 -5.29 10.25 -9.13 -0.09 -5.39 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.25 6.48 -51.93 -0.34 -0.09 16 36 H 0.14 0.80 6.30 -52.48 -0.33 0.47 16 37 H 0.15 1.40 7.74 -52.49 -0.41 0.99 16 38 H 0.40 4.55 6.42 -40.82 -0.26 4.29 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 48 H 0.16 1.40 6.42 -52.49 -0.34 1.07 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -32.18 388.17 -9.09 -41.27 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.45 Total: 2.56 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.86 Total: 5.76 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.33 Total: -55.20 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.27 Total: -16.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.18 -9.09 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035402072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.057 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds