Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46852 * 2 1 4 4 C 1.50697 * 109.47520 * 120.00194 * 2 1 3 5 5 C 1.38354 * 119.45913 * 275.00033 * 4 2 1 6 6 C 1.38358 * 119.30086 * 180.02562 * 5 4 2 7 7 C 1.40020 * 118.28838 * 359.97438 * 6 5 4 8 8 C 1.47841 * 120.55514 * 180.02562 * 7 6 5 9 9 O 1.21548 * 120.00433 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99748 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99965 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47195 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51228 * 304.90238 * 12 11 10 14 14 C 1.52874 * 109.62721 * 184.90811 * 12 11 10 15 15 N 1.47146 * 108.61038 * 187.90024 * 14 12 11 16 16 C 1.36938 * 120.98166 * 230.49961 * 15 14 12 17 17 H 1.08000 * 120.00437 * 26.46046 * 16 15 14 18 18 C 1.38817 * 120.00106 * 206.45559 * 16 15 14 19 19 N 1.31620 * 119.99788 * 16.42248 * 18 16 15 20 20 Si 1.86802 * 119.99867 * 196.14101 * 18 16 15 21 21 H 1.48493 * 109.47220 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46793 * 120.00703 * 20 18 16 23 23 H 1.48501 * 109.47003 * 240.00077 * 20 18 16 24 24 C 1.47152 * 118.03553 * 50.22601 * 15 14 12 25 25 C 1.53291 * 108.38463 * 309.71610 * 24 15 14 26 26 O 1.42958 * 109.22268 * 52.30270 * 25 24 15 27 27 C 1.39516 * 118.88413 * 0.27723 * 7 6 5 28 28 N 1.31696 * 120.56452 * 359.40534 * 27 7 6 29 29 H 1.09002 * 109.46798 * 299.99660 * 1 2 3 30 30 H 1.09000 * 109.47468 * 60.00159 * 1 2 3 31 31 H 1.09001 * 109.47066 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46798 * 240.00340 * 2 1 3 33 33 H 1.08999 * 109.47016 * 60.00045 * 3 2 1 34 34 H 1.08997 * 109.46760 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46954 * 300.00155 * 3 2 1 36 36 H 1.07996 * 120.34763 * 0.02562 * 5 4 2 37 37 H 1.07997 * 120.85249 * 180.02562 * 6 5 4 38 38 H 0.97002 * 119.99921 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.46907 * 59.99826 * 11 10 8 40 40 H 1.08995 * 109.47254 * 300.00014 * 11 10 8 41 41 H 1.09004 * 109.61801 * 68.08073 * 14 12 11 42 42 H 1.09002 * 109.52448 * 307.66775 * 14 12 11 43 43 H 0.96997 * 119.99644 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.68009 * 69.44637 * 24 15 14 45 45 H 1.08998 * 109.67837 * 189.95158 * 24 15 14 46 46 H 1.09002 * 109.50962 * 172.22809 * 25 24 15 47 47 H 1.08996 * 109.51452 * 292.32644 * 25 24 15 48 48 H 1.08004 * 119.71792 * 179.72233 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1603 -0.0094 2.4163 6 6 2.6224 -0.6648 3.5438 7 6 2.9439 -2.0233 3.4366 8 6 3.4415 -2.7727 4.6099 9 8 3.5750 -2.2097 5.6788 10 7 3.7482 -4.0801 4.4939 11 6 4.2418 -4.8226 5.6564 12 6 4.5114 -6.2747 5.2571 13 1 3.6108 -6.7050 4.8191 14 6 4.9095 -7.0816 6.4930 15 7 5.3461 -8.4186 6.0603 16 6 4.8353 -9.5489 6.6405 17 1 3.8515 -9.5302 7.0857 18 6 5.5821 -10.7190 6.6563 19 7 6.8759 -10.6773 6.4184 20 14 4.7520 -12.3518 7.0232 21 1 3.3032 -12.1284 7.2600 22 1 4.9288 -13.2675 5.8676 23 1 5.3642 -12.9576 8.2329 24 6 6.3431 -8.5051 4.9816 25 6 5.8712 -7.6290 3.8156 26 8 5.5744 -6.3179 4.3021 27 6 2.7919 -2.6566 2.2028 28 7 2.3423 -1.9908 1.1593 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9563 -0.8900 36 1 1.9021 1.0383 2.4614 37 1 2.7314 -0.1421 4.4826 38 1 3.6420 -4.5293 3.6408 39 1 3.4934 -4.7968 6.4485 40 1 5.1649 -4.3663 6.0138 41 1 4.0534 -7.1735 7.1615 42 1 5.7266 -6.5778 7.0093 43 1 7.3977 -11.4949 6.4298 44 1 7.3071 -8.1472 5.3431 45 1 6.4365 -9.5392 4.6502 46 1 6.6581 -7.5688 3.0637 47 1 4.9761 -8.0647 3.3718 48 1 3.0402 -3.7030 2.1038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035402073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = -30.330279 kcal Electronic energy + Delta-G solvation = -28032.000935 eV Core-core repulsion = 24087.376554 eV Total energy + Delta-G solvation = -3944.624381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99395 -39.44480 -38.44211 -35.93974 -35.04135 -34.34740 -32.83147 -31.83866 -31.08029 -30.21233 -27.65889 -27.56796 -25.91564 -24.67660 -23.68061 -23.20612 -21.97093 -21.44433 -20.45978 -19.68842 -18.21912 -17.14193 -16.86874 -16.36808 -16.11076 -15.62581 -15.36825 -15.11165 -14.99097 -14.68194 -14.43279 -14.28228 -14.11113 -13.80902 -13.45145 -13.32629 -13.20440 -13.12805 -12.97348 -12.76703 -12.50061 -12.38822 -11.70919 -11.61734 -11.59546 -11.39114 -11.15734 -10.90696 -10.75123 -10.45124 -10.34516 -10.27068 -10.20963 -10.02147 -9.73121 -9.64367 -9.38958 -9.11396 -9.03665 -8.58666 -6.79186 -5.87897 -3.32123 0.35199 0.90703 2.69746 3.04525 3.31389 3.39480 3.41511 3.56423 3.70896 4.17694 4.22672 4.39537 4.48174 4.53057 4.65448 4.66915 4.74010 4.80335 5.06246 5.11449 5.19069 5.26864 5.29783 5.36280 5.42583 5.42904 5.47976 5.51811 5.68015 5.74982 5.76977 5.79718 5.81952 5.87793 5.98685 6.10697 6.21546 6.24558 6.32906 6.42325 6.44609 6.71151 7.06341 7.41268 7.48424 7.56045 7.67617 7.80692 8.09536 8.29767 9.07711 9.70224 10.26949 11.20342 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.002010 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.442109 B =13930.106160 C =14269.101008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.155 3.845 5 C -0.179 4.179 6 C -0.015 4.015 7 C -0.189 4.189 8 C 0.561 3.439 9 O -0.539 6.539 10 N -0.713 5.713 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.139 3.861 25 C 0.039 3.961 26 O -0.390 6.390 27 C 0.141 3.859 28 N -0.485 5.485 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.402 0.598 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.255 0.745 44 H 0.029 0.971 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.041 0.959 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 21.572 -12.819 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.018 3.982 5 C -0.198 4.198 6 C -0.041 4.041 7 C -0.194 4.194 8 C 0.347 3.653 9 O -0.418 6.418 10 N -0.364 5.364 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.018 4.018 28 N -0.194 5.194 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.238 0.762 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.060 0.940 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.213 21.505 -12.858 27.057 hybrid contribution -0.252 -1.101 0.723 1.341 sum -10.465 20.404 -12.134 25.944 Atomic orbital electron populations 1.21808 0.93297 1.02555 1.02284 1.20125 0.96411 0.95513 0.94905 1.21943 1.01524 0.94667 1.02503 1.21480 0.92195 0.89761 0.94799 1.21990 1.02864 1.01979 0.93008 1.21740 0.90604 0.92576 0.99204 1.21032 1.06565 0.96116 0.95664 1.18007 0.77798 0.81877 0.87649 1.90776 1.53821 1.68706 1.28453 1.45877 1.66132 1.09742 1.14621 1.21474 1.00065 0.90213 0.87550 1.22733 0.90516 0.93545 0.92795 0.92295 1.21351 0.98555 0.87550 0.93098 1.44049 1.48694 0.99950 1.39048 1.19236 0.97828 0.87714 1.33678 0.91291 1.25067 0.94918 0.99107 1.00578 1.70040 1.04428 1.26898 1.53282 0.86175 0.78922 0.83785 0.77603 1.20197 1.21474 1.21599 1.21447 0.91018 0.99778 0.86429 1.23331 0.99304 0.83529 0.97673 1.87792 1.54178 1.29448 1.59499 1.23006 0.91871 0.99833 0.87094 1.67524 1.11806 1.08547 1.31475 0.92399 0.91662 0.92136 0.88916 0.92014 0.92199 0.91617 0.83950 0.83446 0.76218 0.89836 0.90351 0.91729 0.95206 0.93518 0.95317 0.88765 0.89986 0.94049 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.18 37.16 0.34 -0.47 16 2 C -0.05 -0.33 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.72 8.61 37.16 0.32 -0.40 16 4 C 0.16 1.41 5.79 -82.51 -0.48 0.93 16 5 C -0.18 -1.48 9.16 -39.49 -0.36 -1.84 16 6 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 7 C -0.19 -2.16 5.89 -104.82 -0.62 -2.77 16 8 C 0.56 7.70 7.78 -12.33 -0.10 7.60 16 9 O -0.54 -9.08 16.42 5.32 0.09 -9.00 16 10 N -0.71 -9.22 5.46 -61.25 -0.33 -9.56 16 11 C 0.13 1.91 5.35 -4.04 -0.02 1.89 16 12 C 0.06 1.08 2.80 -26.80 -0.07 1.01 16 13 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 14 C 0.12 2.48 6.00 -3.75 -0.02 2.46 16 15 N -0.59 -14.60 3.05 -172.09 -0.53 -15.12 16 16 C -0.26 -6.85 9.65 -15.06 -0.15 -6.99 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -25.74 11.15 55.49 0.62 -25.12 16 20 Si 0.91 21.24 29.58 -169.99 -5.03 16.21 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.14 3.25 5.44 -3.54 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.08 10.33 -35.23 -0.36 -7.45 16 27 C 0.14 1.48 10.71 -17.13 -0.18 1.30 16 28 N -0.49 -5.27 10.25 -9.14 -0.09 -5.36 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.25 6.48 -51.93 -0.34 -0.09 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.14 0.80 6.29 -52.49 -0.33 0.47 16 37 H 0.15 1.39 7.74 -52.49 -0.41 0.99 16 38 H 0.40 4.48 6.54 -40.82 -0.27 4.21 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.16 1.39 6.42 -52.48 -0.34 1.05 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -32.25 388.42 -9.10 -41.35 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.45 Total: 2.43 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.86 Total: 5.75 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.33 Total: -55.16 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.28 Total: -16.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.25 -9.10 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035402073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.024 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds