Wall clock time and date at job start Tue Mar 31 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47404 * 2 1 4 4 N 1.29944 * 125.37955 * 89.71410 * 3 2 1 5 5 C 1.36068 * 108.47647 * 179.90203 * 4 3 2 6 6 C 1.47415 * 126.44735 * 180.10636 * 5 4 3 7 7 O 1.21614 * 120.00216 * 186.83903 * 6 5 4 8 8 N 1.34779 * 120.00095 * 6.85233 * 6 5 4 9 9 C 1.46948 * 120.43730 * 6.02175 * 8 6 5 10 10 C 1.54068 * 108.29263 * 125.73300 * 9 8 6 11 11 H 1.09003 * 110.52114 * 172.87274 * 10 9 8 12 12 C 1.53373 * 108.83268 * 294.50602 * 10 9 8 13 13 C 1.53002 * 109.25270 * 60.26244 * 12 10 9 14 14 C 1.53005 * 109.80299 * 60.57578 * 13 12 10 15 15 C 1.53371 * 109.27609 * 299.44268 * 14 13 12 16 16 H 1.08998 * 110.59533 * 178.09478 * 15 14 13 17 17 C 1.46946 * 120.44251 * 186.30881 * 8 6 5 18 18 N 1.47564 * 107.70595 * 51.33290 * 10 9 8 19 19 C 1.36937 * 121.61070 * 120.36879 * 18 10 9 20 20 H 1.08007 * 119.99537 * 149.61170 * 19 18 10 21 21 C 1.38804 * 120.00295 * 329.61292 * 19 18 10 22 22 N 1.31621 * 119.99900 * 339.89511 * 21 19 18 23 23 Si 1.86796 * 120.00289 * 159.89943 * 21 19 18 24 24 H 1.48496 * 109.47560 * 89.99598 * 23 21 19 25 25 H 1.48504 * 109.47243 * 210.00233 * 23 21 19 26 26 H 1.48509 * 109.46905 * 329.99683 * 23 21 19 27 27 C 1.36098 * 107.10087 * 0.36371 * 5 4 3 28 28 C 1.50700 * 126.52241 * 179.78165 * 27 5 4 29 29 O 1.34049 * 125.37967 * 270.02806 * 3 2 1 30 30 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46955 * 299.99782 * 1 2 3 32 32 H 1.08993 * 109.47307 * 60.00350 * 1 2 3 33 33 H 1.08999 * 109.46941 * 239.99434 * 2 1 3 34 34 H 1.09005 * 109.47043 * 119.99973 * 2 1 3 35 35 H 1.08999 * 109.62115 * 245.48960 * 9 8 6 36 36 H 1.08995 * 109.62595 * 6.05560 * 9 8 6 37 37 H 1.08998 * 109.50716 * 300.32634 * 12 10 9 38 38 H 1.09005 * 109.50772 * 180.19839 * 12 10 9 39 39 H 1.08998 * 109.41595 * 300.47592 * 13 12 10 40 40 H 1.09004 * 109.36361 * 180.64786 * 13 12 10 41 41 H 1.08992 * 109.50620 * 179.50481 * 14 13 12 42 42 H 1.09002 * 109.53394 * 59.39849 * 14 13 12 43 43 H 1.09000 * 109.62551 * 353.95600 * 17 8 6 44 44 H 1.08993 * 109.62923 * 114.33900 * 17 8 6 45 45 H 0.97002 * 120.00009 * 179.97438 * 22 21 19 46 46 H 1.08992 * 109.47164 * 180.02562 * 28 27 5 47 47 H 1.09001 * 109.47055 * 300.02418 * 28 27 5 48 48 H 1.08999 * 109.47004 * 60.02057 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2782 2.1318 1.0595 5 6 2.7161 3.3578 0.6639 6 6 3.1091 4.4733 1.5438 7 8 3.3656 5.5625 1.0673 8 7 3.1844 4.2862 2.8764 9 6 3.0063 2.9455 3.4511 10 6 4.2315 2.6296 4.3303 11 1 4.0810 1.6973 4.8746 12 6 5.4730 2.5370 3.4345 13 6 5.6815 3.8746 2.7215 14 6 5.8950 4.9842 3.7531 15 6 4.6555 5.0863 4.6507 16 1 4.7982 5.8490 5.4162 17 6 3.4394 5.4211 3.7744 18 7 4.4222 3.7615 5.2577 19 6 4.3844 3.5908 6.6158 20 1 4.9719 4.2312 7.2571 21 6 3.5912 2.5947 7.1684 22 7 2.5964 2.0845 6.4737 23 14 3.9353 1.9784 8.8978 24 1 3.1649 2.7890 9.8747 25 1 3.5284 0.5543 9.0060 26 1 5.3866 2.1018 9.1876 27 6 2.7176 3.3623 -0.6971 28 6 3.1217 4.5073 -1.5898 29 8 2.2906 2.1526 -1.0929 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.1013 2.9248 4.0583 36 1 2.9296 2.2109 2.6496 37 1 5.3305 1.7488 2.6953 38 1 6.3467 2.3102 4.0456 39 1 4.8032 4.1046 2.1185 40 1 6.5569 3.8072 2.0754 41 1 6.0517 5.9329 3.2400 42 1 6.7679 4.7517 4.3631 43 1 3.6472 6.3144 3.1855 44 1 2.5667 5.5928 4.4044 45 1 2.0423 1.3881 6.8597 46 1 3.0160 4.2095 -2.6329 47 1 2.4815 5.3667 -1.3906 48 1 4.1598 4.7738 -1.3913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039944907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:07 Heat of formation + Delta-G solvation = 42.314805 kcal Electronic energy + Delta-G solvation = -31415.534265 eV Core-core repulsion = 27474.060012 eV Total energy + Delta-G solvation = -3941.474253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.40147 -40.31057 -37.58820 -35.12905 -34.15619 -33.64801 -32.80154 -31.73976 -31.61247 -30.17388 -27.63636 -26.46010 -25.51377 -24.49262 -23.39000 -22.63371 -21.65458 -21.42389 -20.64624 -19.41800 -18.20937 -17.52586 -16.85762 -16.19607 -15.73420 -15.40521 -14.82257 -14.66966 -14.54197 -14.39369 -13.97662 -13.46352 -13.42432 -13.40627 -13.08482 -12.99334 -12.77130 -12.68970 -12.57445 -12.33662 -12.08269 -11.92831 -11.83982 -11.46943 -11.34633 -11.09961 -11.04009 -10.97466 -10.67328 -10.35664 -10.10096 -10.01753 -9.95690 -9.90732 -9.71749 -9.41122 -8.95735 -8.71000 -8.50332 -7.65120 -6.50405 -5.81402 -3.22312 1.21786 2.15625 2.50444 3.36738 3.44522 3.47066 3.50767 3.62286 3.96246 4.48673 4.63562 4.85495 4.92085 4.96812 5.15011 5.22297 5.30140 5.35001 5.47819 5.48334 5.59400 5.74051 5.75925 5.79565 5.84317 5.88332 5.91153 5.97909 6.00158 6.04721 6.13248 6.31330 6.40376 6.44771 6.52808 6.60242 6.70132 6.75427 6.81989 6.94305 6.99433 7.17984 7.30293 7.35978 7.54478 7.67951 7.81303 8.12249 8.42165 8.62906 9.17481 9.79746 10.44721 11.26655 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.004761 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.693500 B = 5880.149621 C = 7261.470161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.186 3.814 4 N -0.438 5.438 5 C -0.060 4.060 6 C 0.592 3.408 7 O -0.559 6.559 8 N -0.567 5.567 9 C 0.072 3.928 10 C 0.184 3.816 11 H 0.102 0.898 12 C -0.130 4.130 13 C -0.137 4.137 14 C -0.120 4.120 15 C 0.154 3.846 16 H 0.078 0.922 17 C 0.099 3.901 18 N -0.579 5.579 19 C -0.252 4.252 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.893 5.893 23 Si 0.898 3.102 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.025 3.975 28 C -0.062 4.062 29 O -0.199 6.199 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.029 0.971 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.254 0.746 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -2.227 -15.546 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.022 4.022 4 N -0.167 5.167 5 C -0.180 4.180 6 C 0.380 3.620 7 O -0.440 6.440 8 N -0.296 5.296 9 C -0.050 4.050 10 C 0.076 3.924 11 H 0.120 0.880 12 C -0.169 4.169 13 C -0.175 4.175 14 C -0.159 4.159 15 C 0.046 3.954 16 H 0.096 0.904 17 C -0.025 4.025 18 N -0.300 5.300 19 C -0.382 4.382 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.537 5.537 23 Si 0.728 3.272 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.031 4.031 28 C -0.119 4.119 29 O -0.087 6.087 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.117 0.883 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.587 -2.020 -15.052 15.269 hybrid contribution 0.201 -0.274 0.455 0.568 sum -1.386 -2.294 -14.596 14.840 Atomic orbital electron populations 1.21786 0.93069 1.02941 1.03060 1.20100 0.96891 0.84052 1.05324 1.26479 1.00153 0.97053 0.78526 1.70830 1.15253 1.02633 1.28025 1.21647 1.09720 0.94499 0.92113 1.16569 0.77902 0.85445 0.82080 1.90740 1.52932 1.25162 1.75157 1.48102 1.65867 1.11336 1.04299 1.23410 1.01118 0.81514 0.99004 1.21048 0.89280 0.93439 0.88599 0.87991 1.22083 1.00701 0.95758 0.98372 1.22063 1.01346 0.95935 0.98169 1.21906 0.99143 0.97359 0.97530 1.21219 0.91159 0.89921 0.93075 0.90430 1.22297 0.99998 0.88093 0.92109 1.44365 1.83408 1.00375 1.01849 1.19074 1.20360 1.16961 0.81791 0.91884 1.25010 0.95054 1.01556 0.97442 1.70023 1.16674 1.29333 1.37623 0.86380 0.78032 0.78051 0.84756 1.21488 1.21613 1.20586 1.23611 0.99201 0.85748 0.94534 1.20377 1.03634 0.91384 0.96463 1.84279 1.64105 1.22253 1.38041 0.90908 0.91389 0.92379 0.89044 0.87178 0.89969 0.86288 0.94085 0.93001 0.89835 0.95206 0.93450 0.92764 0.90475 0.91603 0.93651 0.90721 0.88348 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.89 16 2 C -0.03 -0.24 6.56 -27.89 -0.18 -0.42 16 3 C 0.19 2.53 7.56 -13.08 -0.10 2.43 16 4 N -0.44 -7.40 7.78 -7.65 -0.06 -7.46 16 5 C -0.06 -1.06 6.68 -83.02 -0.55 -1.61 16 6 C 0.59 11.63 5.03 -12.52 -0.06 11.57 16 7 O -0.56 -11.31 14.96 5.27 0.08 -11.23 16 8 N -0.57 -11.71 1.64 -173.22 -0.28 -11.99 16 9 C 0.07 1.58 5.58 -3.24 -0.02 1.56 16 10 C 0.18 4.24 2.63 -66.60 -0.17 4.06 16 11 H 0.10 2.64 6.28 -51.93 -0.33 2.31 16 12 C -0.13 -2.68 5.59 -26.54 -0.15 -2.83 16 13 C -0.14 -2.71 5.55 -26.73 -0.15 -2.85 16 14 C -0.12 -2.34 5.58 -26.54 -0.15 -2.49 16 15 C 0.15 3.28 3.61 -66.84 -0.24 3.03 16 16 H 0.08 1.60 8.03 -51.93 -0.42 1.19 16 17 C 0.10 2.04 5.89 -3.49 -0.02 2.02 16 18 N -0.58 -14.05 2.51 -155.15 -0.39 -14.44 16 19 C -0.25 -6.71 9.68 -15.06 -0.15 -6.86 16 20 H 0.06 1.67 7.91 -52.48 -0.41 1.26 16 21 C 0.01 0.24 4.90 -17.43 -0.09 0.15 16 22 N -0.89 -24.45 10.92 55.49 0.61 -23.84 16 23 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.03 0.37 7.44 -35.08 -0.26 0.11 16 28 C -0.06 -0.70 9.16 36.01 0.33 -0.37 16 29 O -0.20 -2.71 10.73 6.53 0.07 -2.64 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.08 2.06 7.57 -51.93 -0.39 1.66 16 36 H 0.12 2.46 3.99 -65.49 -0.26 2.20 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.70 2.48 -52.43 -0.13 1.57 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.50 6.98 -51.93 -0.36 1.14 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 1.13 7.99 -51.93 -0.41 0.71 16 48 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -30.29 366.17 -8.44 -38.73 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.35 Total: 4.61 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.59 Total: 6.62 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.13 Total: -57.73 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.15 Total: -13.87 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.29 -8.44 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039944907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.043 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds