Wall clock time and date at job start Tue Mar 31 2020 17:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47145 * 2 1 4 4 O 1.33487 * 126.82918 * 270.00286 * 3 2 1 5 5 N 1.20661 * 113.15436 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30290 * 359.73028 * 5 4 3 7 7 C 1.37356 * 126.82752 * 90.00026 * 3 2 1 8 8 C 1.47408 * 128.56492 * 359.96469 * 7 3 2 9 9 O 1.21607 * 119.99857 * 354.21241 * 8 7 3 10 10 N 1.34773 * 119.99990 * 174.20772 * 8 7 3 11 11 C 1.48161 * 127.02920 * 174.51731 * 10 8 7 12 12 C 1.55042 * 103.31967 * 140.99765 * 11 10 8 13 13 C 1.54153 * 102.73032 * 36.98845 * 12 11 10 14 14 C 1.47612 * 127.02618 * 354.54585 * 10 8 7 15 15 C 1.52496 * 110.06052 * 97.48830 * 13 12 11 16 16 C 1.53124 * 109.60034 * 181.75130 * 15 13 12 17 17 C 1.53195 * 109.32159 * 299.46370 * 16 15 13 18 18 N 1.47020 * 108.84737 * 55.05472 * 17 16 15 19 19 C 1.36937 * 120.66016 * 125.97775 * 18 17 16 20 20 H 1.08003 * 119.99991 * 331.74996 * 19 18 17 21 21 C 1.38808 * 119.99646 * 151.75920 * 19 18 17 22 22 N 1.31622 * 120.00130 * 344.06042 * 21 19 18 23 23 Si 1.86802 * 119.99793 * 164.06675 * 21 19 18 24 24 H 1.48500 * 109.47222 * 89.99959 * 23 21 19 25 25 H 1.48503 * 109.46855 * 209.99625 * 23 21 19 26 26 H 1.48494 * 109.47276 * 329.99433 * 23 21 19 27 27 C 1.47029 * 118.65119 * 305.99705 * 18 17 16 28 28 H 1.08994 * 109.47042 * 299.99600 * 1 2 3 29 29 H 1.08996 * 109.47163 * 60.00048 * 1 2 3 30 30 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46817 * 240.00118 * 2 1 3 32 32 H 1.08999 * 109.47453 * 120.00364 * 2 1 3 33 33 H 1.08001 * 127.33763 * 180.27119 * 6 5 4 34 34 H 1.09005 * 110.65085 * 259.46001 * 11 10 8 35 35 H 1.09000 * 110.64875 * 22.37274 * 11 10 8 36 36 H 1.09001 * 110.75642 * 278.67758 * 12 11 10 37 37 H 1.08996 * 110.75825 * 155.30227 * 12 11 10 38 38 H 1.08995 * 109.97475 * 85.98676 * 14 10 8 39 39 H 1.09000 * 109.97481 * 324.71284 * 14 10 8 40 40 H 1.08999 * 109.45096 * 61.70720 * 15 13 12 41 41 H 1.08997 * 109.42313 * 301.77675 * 15 13 12 42 42 H 1.09000 * 109.50656 * 59.42591 * 16 15 13 43 43 H 1.09004 * 109.50085 * 179.50589 * 16 15 13 44 44 H 1.08999 * 109.57057 * 174.91397 * 17 16 15 45 45 H 1.09002 * 109.56542 * 295.27081 * 17 16 15 46 46 H 0.96998 * 119.99468 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.58739 * 293.00235 * 27 18 17 48 48 H 1.09005 * 109.69706 * 172.65790 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2990 2.1752 -1.0685 5 7 2.6894 3.2807 -0.7832 6 6 2.7487 3.4666 0.5022 7 6 2.3068 2.1971 1.0995 8 6 2.1822 1.8468 2.5259 9 8 1.6924 0.7820 2.8499 10 7 2.6113 2.7066 3.4709 11 6 2.4617 2.5671 4.9383 12 6 3.8126 3.0945 5.4868 13 6 4.1367 4.2585 4.5295 14 6 3.3258 3.9802 3.2554 15 6 3.7081 5.5828 5.1523 16 6 3.9946 6.7265 4.1753 17 6 5.4970 6.7762 3.8797 18 7 5.9296 5.4573 3.3951 19 6 6.5975 5.3349 2.2059 20 1 6.4315 6.0535 1.4169 21 6 7.4877 4.2872 2.0146 22 7 7.9307 3.6030 3.0481 23 14 8.0570 3.8484 0.2904 24 1 9.2818 4.6212 -0.0381 25 1 8.3555 2.3953 0.2226 26 1 6.9864 4.1799 -0.6837 27 6 5.6301 4.2727 4.2129 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0590 4.3616 1.0210 34 1 1.6349 3.1782 5.3003 35 1 2.3144 1.5223 5.2120 36 1 4.5802 2.3226 5.4304 37 1 3.7001 3.4550 6.5092 38 1 2.6101 4.7847 3.0865 39 1 3.9953 3.8914 2.3998 40 1 4.2637 5.7463 6.0757 41 1 2.6408 5.5516 5.3716 42 1 3.4467 6.5590 3.2480 43 1 3.6796 7.6712 4.6185 44 1 5.6942 7.5292 3.1167 45 1 6.0402 7.0263 4.7910 46 1 8.5530 2.8711 2.9143 47 1 6.2000 4.3158 5.1410 48 1 5.8955 3.3699 3.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040428343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:20 Heat of formation + Delta-G solvation = 32.157508 kcal Electronic energy + Delta-G solvation = -30949.278527 eV Core-core repulsion = 27007.363820 eV Total energy + Delta-G solvation = -3941.914707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.04775 -41.46511 -39.74716 -37.29174 -35.67985 -35.02801 -34.68424 -32.95438 -31.76801 -31.36962 -30.30070 -27.59587 -27.09829 -25.94690 -25.01905 -24.12542 -23.83696 -22.76139 -21.62242 -20.58831 -19.57180 -18.92951 -18.75045 -18.47739 -17.67925 -17.05452 -16.86574 -16.63906 -15.79488 -15.62412 -15.37835 -15.32605 -15.25846 -14.78077 -14.59550 -14.45077 -14.34831 -13.80266 -13.63421 -13.53225 -13.18449 -13.16794 -12.89329 -12.84196 -12.82800 -12.57737 -12.48730 -12.25034 -12.23931 -11.90740 -11.87377 -11.84778 -11.49042 -11.43076 -11.22608 -11.00086 -10.94583 -10.60034 -10.55772 -9.71122 -8.64594 -7.90070 -5.32658 -0.04375 0.68592 1.35712 1.40514 1.46434 1.64763 1.96155 2.07721 2.44859 3.12055 3.23541 3.25536 3.44786 3.55039 3.68407 3.77652 3.92285 3.99267 4.11797 4.25051 4.27573 4.32205 4.36226 4.39691 4.48747 4.57861 4.66318 4.69373 4.79066 4.82343 4.88144 4.95073 4.96613 5.00079 5.08916 5.11146 5.16519 5.17872 5.24937 5.29733 5.38871 5.41722 5.52446 5.60408 5.68548 5.78849 6.37703 6.39982 6.94796 7.08924 7.15112 7.87904 8.38079 9.15391 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.005574 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.764033 B = 5022.276926 C = 6550.312306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C 0.055 3.945 4 O 0.093 5.907 5 N -0.376 5.376 6 C 0.025 3.975 7 C -0.279 4.279 8 C 0.614 3.386 9 O -0.562 6.562 10 N -0.613 5.613 11 C 0.111 3.889 12 C -0.118 4.118 13 C -0.086 4.086 14 C 0.118 3.882 15 C -0.089 4.089 16 C -0.128 4.128 17 C 0.137 3.863 18 N -0.606 5.606 19 C -0.247 4.247 20 H 0.065 0.935 21 C -0.040 4.040 22 N -0.929 5.929 23 Si 0.939 3.061 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.201 3.799 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.209 0.791 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.013 0.987 46 H 0.246 0.754 47 H -0.005 1.005 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 -2.043 1.417 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.010 4.010 4 O 0.035 5.965 5 N -0.083 5.083 6 C -0.157 4.157 7 C -0.287 4.287 8 C 0.404 3.596 9 O -0.443 6.443 10 N -0.345 5.345 11 C -0.010 4.010 12 C -0.157 4.157 13 C -0.088 4.088 14 C -0.004 4.004 15 C -0.127 4.127 16 C -0.167 4.167 17 C 0.012 3.988 18 N -0.329 5.329 19 C -0.378 4.378 20 H 0.083 0.917 21 C -0.236 4.236 22 N -0.576 5.576 23 Si 0.769 3.231 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.202 1.202 27 C 0.075 3.925 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.225 0.775 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.014 0.986 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.249 -2.005 0.418 16.378 hybrid contribution 1.376 -0.350 -0.173 1.430 sum -14.874 -2.355 0.245 15.061 Atomic orbital electron populations 1.21674 0.91461 1.04209 1.02098 1.20535 0.98230 0.83511 1.06140 1.25456 0.94032 0.96925 0.84552 1.84538 1.61023 1.17488 1.33470 1.73639 1.17397 0.99146 1.18080 1.26964 0.99313 1.00193 0.89272 1.22085 1.15253 0.95875 0.95454 1.16407 0.77620 0.82593 0.82980 1.90721 1.47976 1.23206 1.82407 1.48709 1.55887 1.22227 1.07659 1.22647 0.98284 1.02553 0.77478 1.22710 0.95969 0.96960 1.00012 1.21647 0.96661 0.96591 0.93936 1.22393 0.94447 0.84313 0.99252 1.21395 1.01447 0.91968 0.97890 1.21973 0.96224 0.99008 0.99457 1.21125 0.94129 0.87018 0.96536 1.44327 1.65052 1.01794 1.21764 1.19381 1.16315 1.10796 0.91277 0.91750 1.25513 0.97700 1.01408 0.98945 1.70127 1.34348 1.23859 1.29271 0.85691 0.78521 0.76696 0.82193 1.20910 1.22557 1.20152 1.20468 0.89461 0.90291 0.92313 0.93619 0.91457 0.88785 0.86514 0.88189 0.77479 0.88143 0.90163 0.92904 0.87217 0.89871 0.92054 0.91675 0.89778 0.92326 0.89752 0.93212 0.96907 0.94427 0.98650 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.68 16 2 C -0.05 -0.98 6.01 29.85 0.18 -0.80 16 3 C 0.06 1.58 6.80 25.48 0.17 1.76 16 4 O 0.09 2.87 11.06 77.04 0.85 3.72 16 5 N -0.38 -13.02 12.01 -54.19 -0.65 -13.67 16 6 C 0.02 0.83 10.70 87.29 0.93 1.77 16 7 C -0.28 -9.18 6.34 -18.74 -0.12 -9.30 16 8 C 0.61 20.87 7.88 86.66 0.68 21.56 16 9 O -0.56 -20.21 15.51 -4.05 -0.06 -20.28 16 10 N -0.61 -19.10 3.30 -813.49 -2.68 -21.78 16 11 C 0.11 2.81 7.11 86.76 0.62 3.43 16 12 C -0.12 -3.18 6.15 31.68 0.19 -2.99 16 13 C -0.09 -2.71 0.62 -51.88 -0.03 -2.74 16 14 C 0.12 3.75 3.93 86.36 0.34 4.09 16 15 C -0.09 -2.26 4.40 30.47 0.13 -2.13 16 16 C -0.13 -3.48 5.87 30.70 0.18 -3.30 16 17 C 0.14 5.09 6.50 86.35 0.56 5.66 16 18 N -0.61 -27.95 2.76 -699.60 -1.93 -29.88 16 19 C -0.25 -12.97 9.59 84.03 0.81 -12.17 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.31 16 21 C -0.04 -2.20 4.94 84.86 0.42 -1.78 16 22 N -0.93 -54.30 11.16 21.65 0.24 -54.06 16 23 Si 0.94 45.70 29.58 68.60 2.03 47.73 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 C 0.20 8.86 3.58 86.17 0.31 9.17 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.10 2.41 6.91 -2.39 -0.02 2.39 16 33 H 0.21 6.76 5.56 -2.91 -0.02 6.75 16 34 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 2.07 7.81 -2.39 -0.02 2.05 16 36 H 0.05 1.69 7.84 -2.39 -0.02 1.67 16 37 H 0.11 2.29 7.83 -2.39 -0.02 2.27 16 38 H 0.08 2.29 6.37 -2.39 -0.02 2.27 16 39 H 0.06 2.40 5.34 -2.39 -0.01 2.39 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.61 6.65 -2.39 -0.02 1.59 16 43 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.05 1.85 7.94 -2.39 -0.02 1.83 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.05 2.44 6.08 -2.38 -0.01 2.42 16 Total: -1.00 -67.41 372.97 4.85 -62.56 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.97 Total: 15.14 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.09 Total: 10.53 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -5.02 Total: -119.40 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.79 Total: -16.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.41 4.85 -62.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040428343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.713 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds