Wall clock time and date at job start Tue Mar 31 2020 17:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47111 * 2 1 4 4 O 1.33491 * 126.82411 * 269.99769 * 3 2 1 5 5 N 1.20656 * 113.15376 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.30322 * 359.72866 * 5 4 3 7 7 C 1.37359 * 126.83275 * 89.99279 * 3 2 1 8 8 C 1.47402 * 128.56063 * 359.97155 * 7 3 2 9 9 O 1.21601 * 120.00014 * 352.87464 * 8 7 3 10 10 N 1.34774 * 119.99499 * 172.88096 * 8 7 3 11 11 C 1.48160 * 127.02181 * 181.45203 * 10 8 7 12 12 C 1.55039 * 103.31592 * 140.98590 * 11 10 8 13 13 C 1.54183 * 102.72353 * 37.00791 * 12 11 10 14 14 C 1.47612 * 127.02932 * 1.45082 * 10 8 7 15 15 C 1.52490 * 110.02231 * 219.30645 * 13 12 11 16 16 C 1.53123 * 109.59218 * 298.37460 * 15 13 12 17 17 C 1.53182 * 109.29457 * 299.51393 * 16 15 13 18 18 N 1.46927 * 108.89026 * 55.07281 * 17 16 15 19 19 C 1.36937 * 120.68410 * 125.94724 * 18 17 16 20 20 H 1.08001 * 119.99959 * 332.61781 * 19 18 17 21 21 C 1.38818 * 119.99951 * 152.61814 * 19 18 17 22 22 N 1.31618 * 119.99586 * 161.96600 * 21 19 18 23 23 Si 1.86795 * 119.99939 * 341.96667 * 21 19 18 24 24 H 1.48496 * 109.47337 * 90.72558 * 23 21 19 25 25 H 1.48498 * 109.46819 * 210.72177 * 23 21 19 26 26 H 1.48500 * 109.47221 * 330.72030 * 23 21 19 27 27 C 1.47035 * 118.63731 * 305.97164 * 18 17 16 28 28 H 1.08995 * 109.47531 * 300.00774 * 1 2 3 29 29 H 1.09008 * 109.46436 * 60.00440 * 1 2 3 30 30 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47302 * 239.99706 * 2 1 3 32 32 H 1.08998 * 109.46440 * 119.99509 * 2 1 3 33 33 H 1.08004 * 127.34012 * 180.27225 * 6 5 4 34 34 H 1.09004 * 110.65243 * 259.44307 * 11 10 8 35 35 H 1.08998 * 110.65042 * 22.35767 * 11 10 8 36 36 H 1.09001 * 110.75594 * 278.70076 * 12 11 10 37 37 H 1.08999 * 110.75938 * 155.32260 * 12 11 10 38 38 H 1.08997 * 109.97202 * 85.95826 * 14 10 8 39 39 H 1.09005 * 109.99889 * 324.71568 * 14 10 8 40 40 H 1.09000 * 109.44717 * 178.34444 * 15 13 12 41 41 H 1.09002 * 109.44686 * 58.40539 * 15 13 12 42 42 H 1.09001 * 109.50034 * 59.45773 * 16 15 13 43 43 H 1.08998 * 109.50144 * 179.56732 * 16 15 13 44 44 H 1.09000 * 109.57315 * 174.89409 * 17 16 15 45 45 H 1.09005 * 109.57090 * 295.25405 * 17 16 15 46 46 H 0.96997 * 119.99805 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58237 * 172.58010 * 27 18 17 48 48 H 1.08997 * 109.58262 * 292.99249 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2991 2.1752 -1.0686 5 7 2.6904 3.2803 -0.7834 6 6 2.7504 3.4661 0.5020 7 6 2.3067 2.1973 1.0994 8 6 2.1821 1.8470 2.5258 9 8 1.6702 0.7929 2.8506 10 7 2.6354 2.6953 3.4699 11 6 2.6173 2.4894 4.9370 12 6 3.9747 3.0803 5.3974 13 6 4.1466 4.2995 4.4693 14 6 3.2514 4.0192 3.2537 15 6 5.6038 4.4265 4.0385 16 6 6.4860 4.6476 5.2703 17 6 6.0573 5.9385 5.9748 18 7 4.6219 5.8605 6.2784 19 6 4.1658 6.0572 7.5546 20 1 4.8050 5.8359 8.3965 21 6 2.8820 6.5412 7.7660 22 7 2.3120 6.4017 8.9441 23 14 1.9637 7.3902 6.3785 24 1 1.1760 6.3863 5.6191 25 1 1.0478 8.4130 6.9443 26 1 2.9373 8.0464 5.4693 27 6 3.6850 5.5663 5.1840 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.0615 4.3609 1.0208 34 1 1.7881 3.0320 5.3912 35 1 2.5567 1.4276 5.1755 36 1 4.7803 2.3621 5.2448 37 1 3.9263 3.3925 6.4406 38 1 2.4768 4.7823 3.1778 39 1 3.8519 4.0069 2.3441 40 1 5.7092 5.2730 3.3599 41 1 5.9128 3.5132 3.5300 42 1 6.3743 3.8058 5.9537 43 1 7.5281 4.7305 4.9615 44 1 6.6205 6.0534 6.9009 45 1 6.2466 6.7908 5.3222 46 1 1.4148 6.7395 9.0917 47 1 2.6852 5.4131 5.5902 48 1 3.6722 6.3987 4.4805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040428344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:24 Heat of formation + Delta-G solvation = 39.952985 kcal Electronic energy + Delta-G solvation = -30356.220911 eV Core-core repulsion = 26414.644241 eV Total energy + Delta-G solvation = -3941.576670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.04054 -41.61074 -39.91409 -37.47238 -35.68450 -35.00534 -34.73929 -32.96955 -32.38808 -31.48530 -30.66958 -27.49499 -27.21200 -26.08053 -25.02268 -24.32712 -23.86429 -22.64752 -22.19574 -20.36017 -19.88700 -18.95200 -18.80609 -18.42678 -17.71839 -17.50368 -16.85461 -16.73283 -16.01296 -15.58972 -15.58225 -15.39759 -15.33003 -14.92517 -14.61487 -14.52736 -14.43641 -14.14911 -13.85213 -13.60277 -13.52366 -13.40831 -13.14186 -12.91174 -12.68985 -12.55397 -12.48909 -12.31904 -12.09171 -11.90061 -11.86426 -11.64303 -11.52299 -11.45277 -11.36237 -11.16909 -11.06885 -10.63125 -10.60470 -9.83268 -8.87552 -8.13080 -5.45097 -0.05920 0.66943 1.27090 1.40559 1.48137 1.56583 1.91515 2.00839 2.41818 3.05879 3.07746 3.22043 3.31135 3.40477 3.57002 3.62223 3.77330 3.86606 4.09176 4.17874 4.22681 4.24381 4.27055 4.30759 4.33370 4.38524 4.55821 4.62606 4.64710 4.68351 4.72418 4.77416 4.82292 4.92912 4.95939 4.97077 5.08839 5.08926 5.12361 5.18525 5.28411 5.29461 5.33387 5.43473 5.60554 5.90442 6.16641 6.35579 6.89365 6.95326 7.05918 7.66300 8.06350 9.06928 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003627 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.548448 B = 7718.080693 C = 8054.769829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.064 3.936 4 O 0.093 5.907 5 N -0.369 5.369 6 C 0.022 3.978 7 C -0.279 4.279 8 C 0.614 3.386 9 O -0.563 6.563 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.106 4.106 13 C -0.080 4.080 14 C 0.099 3.901 15 C -0.091 4.091 16 C -0.127 4.127 17 C 0.140 3.860 18 N -0.614 5.614 19 C -0.236 4.236 20 H 0.053 0.947 21 C -0.034 4.034 22 N -0.960 5.960 23 Si 0.940 3.060 24 H -0.276 1.276 25 H -0.319 1.319 26 H -0.255 1.255 27 C 0.135 3.865 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.224 0.776 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.259 0.741 47 H 0.047 0.953 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -10.659 -21.077 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.001 4.001 4 O 0.035 5.965 5 N -0.076 5.076 6 C -0.160 4.160 7 C -0.286 4.286 8 C 0.404 3.596 9 O -0.444 6.444 10 N -0.339 5.339 11 C -0.014 4.014 12 C -0.144 4.144 13 C -0.083 4.083 14 C -0.024 4.024 15 C -0.129 4.129 16 C -0.165 4.165 17 C 0.016 3.984 18 N -0.338 5.338 19 C -0.366 4.366 20 H 0.070 0.930 21 C -0.228 4.228 22 N -0.607 5.607 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.249 1.249 26 H -0.180 1.180 27 C 0.010 3.990 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.240 0.760 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.945 -10.477 -21.970 24.518 hybrid contribution -0.980 0.748 1.294 1.787 sum 1.965 -9.729 -20.676 22.935 Atomic orbital electron populations 1.21699 0.92348 1.04065 1.01864 1.20512 0.97526 0.84039 1.06402 1.25334 0.93436 0.96737 0.84567 1.84569 1.61115 1.17533 1.33248 1.73673 1.17138 0.98867 1.17914 1.27135 0.99860 0.99841 0.89170 1.21912 1.15815 0.96495 0.94417 1.16537 0.77444 0.82431 0.83157 1.90763 1.46330 1.24902 1.82434 1.48606 1.59558 1.18984 1.06802 1.22496 0.98416 1.01779 0.78704 1.22569 0.95702 0.96235 0.99872 1.21515 0.97046 0.95760 0.93948 1.22635 0.96621 0.83598 0.99543 1.21417 0.91332 1.02570 0.97544 1.21922 0.99542 0.98003 0.97059 1.21143 0.82889 0.96168 0.98203 1.44425 1.02951 1.82089 1.04380 1.18823 0.98442 1.35546 0.83765 0.92959 1.25835 0.98612 1.00543 0.97829 1.69935 1.15092 1.50558 1.25101 0.86068 0.78368 0.78487 0.80095 1.20330 1.24879 1.17952 1.21378 0.93264 0.94490 0.89870 0.94207 0.91421 0.89072 0.86020 0.88064 0.75967 0.92347 0.89722 0.89896 0.91126 0.90917 0.87397 0.90534 0.90497 0.92856 0.89541 0.93102 0.94596 0.93233 0.93458 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.90 71.98 0.71 -1.33 16 2 C -0.05 -0.70 6.00 29.85 0.18 -0.52 16 3 C 0.06 1.28 6.80 25.48 0.17 1.46 16 4 O 0.09 1.92 11.06 77.01 0.85 2.78 16 5 N -0.37 -8.28 12.01 -54.19 -0.65 -8.93 16 6 C 0.02 0.46 10.72 87.29 0.94 1.40 16 7 C -0.28 -6.57 6.35 -18.75 -0.12 -6.69 16 8 C 0.61 17.39 7.89 86.66 0.68 18.08 16 9 O -0.56 -18.48 15.56 -4.03 -0.06 -18.54 16 10 N -0.61 -16.84 3.30 -813.56 -2.68 -19.52 16 11 C 0.11 3.31 7.09 86.76 0.61 3.92 16 12 C -0.11 -3.22 5.00 31.69 0.16 -3.07 16 13 C -0.08 -2.27 0.63 -51.90 -0.03 -2.31 16 14 C 0.10 2.39 4.90 86.35 0.42 2.81 16 15 C -0.09 -2.09 4.34 30.47 0.13 -1.96 16 16 C -0.13 -3.27 5.89 30.70 0.18 -3.09 16 17 C 0.14 4.78 6.50 86.36 0.56 5.35 16 18 N -0.61 -26.18 2.29 -699.96 -1.60 -27.78 16 19 C -0.24 -12.64 10.06 84.03 0.85 -11.80 16 20 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 21 C -0.03 -1.91 5.28 84.86 0.45 -1.46 16 22 N -0.96 -59.24 13.97 21.65 0.30 -58.94 16 23 Si 0.94 44.99 24.26 68.60 1.66 46.66 16 24 H -0.28 -12.49 6.54 99.48 0.65 -11.84 16 25 H -0.32 -15.97 7.11 99.48 0.71 -15.27 16 26 H -0.26 -11.43 6.53 99.48 0.65 -10.78 16 27 C 0.14 5.06 2.53 86.14 0.22 5.28 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.81 6.94 -2.39 -0.02 1.79 16 33 H 0.22 3.61 5.45 -2.91 -0.02 3.59 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.08 2.54 7.86 -2.39 -0.02 2.52 16 36 H 0.08 2.25 7.63 -2.39 -0.02 2.23 16 37 H 0.07 2.71 7.48 -2.39 -0.02 2.69 16 38 H 0.07 1.77 7.67 -2.39 -0.02 1.75 16 39 H 0.11 1.98 4.76 -2.38 -0.01 1.97 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.52 7.13 -2.39 -0.02 1.50 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 45 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.05 2.05 4.33 -2.39 -0.01 2.04 16 48 H 0.04 1.31 6.95 -2.39 -0.02 1.29 16 Total: -1.00 -68.66 366.26 4.79 -63.87 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.86 Total: 14.34 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.11 Total: 6.07 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.64 Total: -115.18 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.79 Total: -15.76 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.66 Total: 46.66 kcal Total: -68.66 4.79 -63.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040428344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.823 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds