Wall clock time and date at job start Tue Mar 31 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47260 * 2 1 4 4 C 1.35317 * 126.66559 * 90.00038 * 3 2 1 5 5 C 1.42271 * 103.92145 * 180.02562 * 4 3 2 6 6 C 1.48327 * 126.93824 * 180.02562 * 5 4 3 7 7 O 1.21500 * 120.00147 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99964 * 179.97438 * 6 5 4 9 9 C 1.48160 * 127.02795 * 359.97438 * 8 6 5 10 10 C 1.55046 * 103.31454 * 140.99595 * 9 8 6 11 11 C 1.54154 * 102.73498 * 36.98793 * 10 9 8 12 12 C 1.47613 * 127.02473 * 180.02562 * 8 6 5 13 13 C 1.52495 * 110.06069 * 97.48637 * 11 10 9 14 14 C 1.53126 * 109.60230 * 181.75519 * 13 11 10 15 15 C 1.53191 * 109.31721 * 299.46798 * 14 13 11 16 16 N 1.47012 * 108.85327 * 55.05291 * 15 14 13 17 17 C 1.36935 * 120.66376 * 125.97754 * 16 15 14 18 18 H 1.07998 * 120.00081 * 332.80130 * 17 16 15 19 19 C 1.38807 * 120.00042 * 152.80816 * 17 16 15 20 20 N 1.31624 * 120.00214 * 159.32823 * 19 17 16 21 21 Si 1.86801 * 119.99844 * 339.32377 * 19 17 16 22 22 H 1.48502 * 109.47295 * 92.64134 * 21 19 17 23 23 H 1.48509 * 109.46915 * 212.63958 * 21 19 17 24 24 H 1.48495 * 109.47271 * 332.63764 * 21 19 17 25 25 C 1.47037 * 118.65206 * 305.99884 * 16 15 14 26 26 N 1.30989 * 106.12475 * 0.26067 * 5 4 3 27 27 O 1.20911 * 111.43841 * 359.53869 * 26 5 4 28 28 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46329 * 299.99605 * 1 2 3 30 30 H 1.09000 * 109.47434 * 59.99704 * 1 2 3 31 31 H 1.09003 * 109.46955 * 239.99997 * 2 1 3 32 32 H 1.09000 * 109.47434 * 120.00295 * 2 1 3 33 33 H 1.07994 * 128.03844 * 0.02562 * 4 3 2 34 34 H 1.08997 * 110.65277 * 259.45089 * 9 8 6 35 35 H 1.09003 * 110.65112 * 22.37785 * 9 8 6 36 36 H 1.09003 * 110.76065 * 278.67924 * 10 9 8 37 37 H 1.08998 * 110.75968 * 155.30179 * 10 9 8 38 38 H 1.08994 * 109.97454 * 85.99157 * 12 8 6 39 39 H 1.08997 * 110.00399 * 324.72662 * 12 8 6 40 40 H 1.08996 * 109.44924 * 61.71227 * 13 11 10 41 41 H 1.09001 * 109.42444 * 301.77634 * 13 11 10 42 42 H 1.09003 * 109.50183 * 59.42734 * 14 13 11 43 43 H 1.08997 * 109.50187 * 179.50429 * 14 13 11 44 44 H 1.09001 * 109.57078 * 174.91300 * 15 14 13 45 45 H 1.09005 * 109.56727 * 295.26095 * 15 14 13 46 46 H 0.97003 * 120.00193 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58135 * 293.00142 * 25 16 15 48 48 H 1.08997 * 109.69659 * 172.65827 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7386 3.4199 0.5354 6 6 3.1657 4.6270 1.2841 7 8 3.1646 4.6202 2.4991 8 7 3.5558 5.7310 0.6167 9 6 3.6191 5.9095 -0.8527 10 6 3.1264 7.3654 -1.0571 11 6 3.7264 8.1008 0.1576 12 6 4.0085 7.0090 1.2004 13 6 5.0217 8.7998 -0.2415 14 6 5.6311 9.4899 0.9820 15 6 4.6454 10.5324 1.5192 16 7 3.3578 9.8752 1.7866 17 6 2.7652 9.9748 3.0171 18 1 3.3713 10.1303 3.8974 19 6 1.3856 9.8759 3.1330 20 7 0.8431 9.5643 4.2911 21 14 0.2988 10.1851 1.6455 22 1 0.0277 8.8989 0.9545 23 1 -0.9838 10.7899 2.0868 24 1 0.9882 11.1124 0.7129 25 6 2.7197 9.1086 0.7063 26 7 2.6825 3.2795 -0.7658 27 8 2.2986 2.1755 -1.0750 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.2071 1.9139 2.1271 34 1 4.6426 5.7964 -1.2101 35 1 2.9577 5.2033 -1.3546 36 1 2.0375 7.4112 -1.0372 37 1 3.5145 7.7774 -1.9885 38 1 5.0766 6.9638 1.4127 39 1 3.4555 7.2173 2.1163 40 1 4.8109 9.5433 -1.0101 41 1 5.7253 8.0642 -0.6312 42 1 5.8335 8.7484 1.7549 43 1 6.5612 9.9815 0.6969 44 1 5.0355 10.9623 2.4418 45 1 4.5065 11.3194 0.7779 46 1 -0.1211 9.4955 4.3722 47 1 2.4106 9.7865 -0.0893 48 1 1.8491 8.5806 1.0953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040499513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:27 Heat of formation + Delta-G solvation = 35.119174 kcal Electronic energy + Delta-G solvation = -30011.257437 eV Core-core repulsion = 26069.471157 eV Total energy + Delta-G solvation = -3941.786279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.23635 -41.66327 -39.97001 -37.58096 -35.88958 -35.20677 -34.75077 -33.17178 -32.47965 -31.20101 -30.37952 -28.17381 -27.22104 -25.57260 -24.91644 -24.40565 -24.24718 -23.14313 -21.92491 -20.36539 -20.05226 -18.96851 -18.67610 -18.43128 -18.09758 -17.17357 -17.10990 -16.84924 -16.00954 -15.60758 -15.51927 -15.41163 -15.35745 -15.01079 -14.76048 -14.64593 -14.40690 -14.07596 -13.93117 -13.59522 -13.54435 -13.47130 -13.16701 -13.04004 -12.80146 -12.68336 -12.48328 -12.29568 -12.10728 -12.02609 -11.86691 -11.69684 -11.64341 -11.63765 -11.49632 -11.23058 -11.12880 -10.69561 -10.51699 -9.95657 -8.94483 -8.21121 -5.51275 -0.06835 0.57671 1.20771 1.30546 1.40490 1.52314 1.89747 1.96002 2.35775 2.68412 2.98350 3.26326 3.33345 3.53787 3.58244 3.73052 3.81641 3.93608 4.11133 4.15062 4.17748 4.24957 4.32785 4.33704 4.41347 4.42532 4.59642 4.63823 4.65623 4.67389 4.74178 4.80386 4.91712 4.93162 4.93951 4.99501 5.05389 5.07070 5.12836 5.13458 5.20030 5.29233 5.39071 5.39952 5.55789 5.82848 6.08671 6.22346 6.67363 6.88347 6.95817 7.59585 7.99217 8.99227 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.003651 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.392435 B = 7666.417522 C = 8536.459498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.005 4.005 4 C -0.200 4.200 5 C -0.041 4.041 6 C 0.597 3.403 7 O -0.570 6.570 8 N -0.610 5.610 9 C 0.097 3.903 10 C -0.120 4.120 11 C -0.080 4.080 12 C 0.131 3.869 13 C -0.087 4.087 14 C -0.133 4.133 15 C 0.140 3.860 16 N -0.619 5.619 17 C -0.241 4.241 18 H 0.048 0.952 19 C -0.039 4.039 20 N -0.959 5.959 21 Si 0.944 3.056 22 H -0.288 1.288 23 H -0.310 1.310 24 H -0.249 1.249 25 C 0.139 3.861 26 N -0.335 5.335 27 O 0.132 5.868 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.185 0.815 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.259 0.741 47 H 0.042 0.958 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -18.306 -19.007 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 C -0.068 4.068 4 C -0.223 4.223 5 C -0.198 4.198 6 C 0.384 3.616 7 O -0.448 6.448 8 N -0.342 5.342 9 C -0.024 4.024 10 C -0.159 4.159 11 C -0.082 4.082 12 C 0.009 3.991 13 C -0.125 4.125 14 C -0.171 4.171 15 C 0.015 3.985 16 N -0.343 5.343 17 C -0.371 4.371 18 H 0.066 0.934 19 C -0.233 4.233 20 N -0.606 5.606 21 Si 0.773 3.227 22 H -0.216 1.216 23 H -0.239 1.239 24 H -0.173 1.173 25 C 0.014 3.986 26 N -0.035 5.035 27 O 0.054 5.946 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.202 0.798 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.239 -17.471 -19.209 26.705 hybrid contribution -1.217 0.269 1.487 1.940 sum 5.022 -17.201 -17.722 25.203 Atomic orbital electron populations 1.21840 0.93087 1.04045 1.02177 1.20456 0.96696 0.83214 1.07235 1.25171 0.99821 0.98122 0.83727 1.22627 1.05767 0.91095 1.02796 1.23218 1.08182 0.97485 0.90898 1.17022 0.77386 0.81464 0.85693 1.90807 1.56382 1.83151 1.14500 1.48897 1.63094 1.12115 1.10124 1.23062 1.03661 0.97804 0.77922 1.22830 1.00483 0.93808 0.98772 1.21564 0.98334 0.94079 0.94264 1.22015 0.99001 0.81265 0.96782 1.21424 0.93694 0.99727 0.97642 1.22001 0.98819 0.98603 0.97700 1.21194 0.84534 0.93971 0.98757 1.44519 1.22857 1.57522 1.09403 1.18821 0.89870 1.43471 0.84929 0.93389 1.25917 0.98197 1.00578 0.98639 1.69995 1.11033 1.52552 1.26999 0.85943 0.77960 0.78022 0.80726 1.21580 1.23879 1.17252 1.21331 0.94322 0.92568 0.90344 1.74127 1.14834 0.99956 1.14606 1.84743 1.59194 1.16626 1.33994 0.88853 0.93250 0.92542 0.86513 0.86241 0.79784 0.88038 0.88146 0.92459 0.85441 0.90646 0.94584 0.89580 0.89441 0.93772 0.88675 0.93215 0.93932 0.93260 0.93995 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 71.98 0.71 -0.54 16 2 C -0.04 -0.29 6.50 29.85 0.19 -0.10 16 3 C -0.01 -0.09 6.73 25.01 0.17 0.08 16 4 C -0.20 -4.91 10.92 22.60 0.25 -4.66 16 5 C -0.04 -1.28 7.05 42.96 0.30 -0.98 16 6 C 0.60 23.83 7.92 86.93 0.69 24.52 16 7 O -0.57 -27.81 17.30 -3.71 -0.06 -27.87 16 8 N -0.61 -22.09 3.30 -812.41 -2.68 -24.76 16 9 C 0.10 2.52 6.73 86.76 0.58 3.10 16 10 C -0.12 -3.13 6.15 31.69 0.19 -2.94 16 11 C -0.08 -2.63 0.62 -51.88 -0.03 -2.66 16 12 C 0.13 5.15 5.57 86.36 0.48 5.64 16 13 C -0.09 -2.17 4.40 30.47 0.13 -2.04 16 14 C -0.13 -3.81 5.87 30.70 0.18 -3.63 16 15 C 0.14 5.23 6.50 86.35 0.56 5.79 16 16 N -0.62 -29.59 2.54 -699.63 -1.78 -31.37 16 17 C -0.24 -14.34 10.04 84.03 0.84 -13.50 16 18 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 19 C -0.04 -2.42 5.23 84.86 0.44 -1.98 16 20 N -0.96 -64.52 13.97 21.65 0.30 -64.22 16 21 Si 0.94 49.28 24.33 68.60 1.67 50.94 16 22 H -0.29 -14.74 6.61 99.48 0.66 -14.08 16 23 H -0.31 -16.35 7.11 99.48 0.71 -15.65 16 24 H -0.25 -11.94 6.64 99.48 0.66 -11.28 16 25 C 0.14 6.00 2.51 86.16 0.22 6.21 16 26 N -0.34 -8.87 9.18 -49.50 -0.45 -9.33 16 27 O 0.13 2.74 11.18 71.84 0.80 3.54 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.18 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 2.57 5.51 -2.39 -0.01 2.55 16 36 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 37 H 0.13 2.24 7.83 -2.39 -0.02 2.22 16 38 H 0.08 2.76 6.55 -2.39 -0.02 2.75 16 39 H 0.04 1.87 7.52 -2.39 -0.02 1.85 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.45 6.65 -2.39 -0.02 1.43 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 45 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.26 16.61 8.31 -92.71 -0.77 15.84 16 47 H 0.04 1.70 7.03 -2.39 -0.02 1.68 16 48 H 0.03 1.66 4.54 -2.39 -0.01 1.65 16 Total: -1.00 -84.16 372.02 4.59 -79.57 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.87 Total: 11.17 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.92 Total: 12.32 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -4.61 Total: -129.68 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.74 Total: -24.33 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 1.67 Total: 50.94 kcal Total: -84.16 4.59 -79.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040499513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.691 kcal (2) G-P(sol) polarization free energy of solvation -84.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds