Wall clock time and date at job start Tue Mar 31 2020 18:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47491 * 2 1 4 4 N 1.29941 * 125.37595 * 90.27254 * 3 2 1 5 5 C 1.36067 * 108.47859 * 180.19390 * 4 3 2 6 6 C 1.47415 * 126.45230 * 179.86534 * 5 4 3 7 7 O 1.21608 * 119.99894 * 179.68601 * 6 5 4 8 8 N 1.34782 * 119.99497 * 359.68667 * 6 5 4 9 9 C 1.47478 * 125.66591 * 0.02747 * 8 6 5 10 10 C 1.55019 * 104.99439 * 204.06983 * 9 8 6 11 11 C 1.54542 * 101.52534 * 323.55726 * 10 9 8 12 12 C 1.47445 * 125.79880 * 180.02562 * 8 6 5 13 13 C 1.52279 * 110.16133 * 276.40934 * 11 10 9 14 14 C 1.53317 * 109.41427 * 297.16559 * 13 11 10 15 15 N 1.46935 * 108.70641 * 306.49081 * 14 13 11 16 16 C 1.36937 * 120.56244 * 234.25518 * 15 14 13 17 17 H 1.08002 * 119.99784 * 27.91179 * 16 15 14 18 18 C 1.38806 * 120.00142 * 207.91481 * 16 15 14 19 19 N 1.31623 * 119.99769 * 17.45634 * 18 16 15 20 20 Si 1.86792 * 120.00354 * 197.45279 * 18 16 15 21 21 H 1.48497 * 109.47162 * 89.99609 * 20 18 16 22 22 H 1.48499 * 109.47422 * 210.00286 * 20 18 16 23 23 H 1.48507 * 109.47076 * 329.99898 * 20 18 16 24 24 C 1.46931 * 118.87179 * 54.23566 * 15 14 13 25 25 C 1.52266 * 110.16200 * 153.28067 * 11 10 9 26 26 C 1.36101 * 107.09911 * 359.60169 * 5 4 3 27 27 O 1.34051 * 125.38217 * 270.02903 * 3 2 1 28 28 H 1.09003 * 109.46615 * 299.99807 * 1 2 3 29 29 H 1.09005 * 109.46866 * 59.99454 * 1 2 3 30 30 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47351 * 240.00263 * 2 1 3 32 32 H 1.08997 * 109.47151 * 120.00668 * 2 1 3 33 33 H 1.09000 * 110.35426 * 85.15627 * 9 8 6 34 34 H 1.09004 * 110.35391 * 322.97600 * 9 8 6 35 35 H 1.08999 * 111.01703 * 81.61149 * 10 9 8 36 36 H 1.08996 * 111.01673 * 205.49939 * 10 9 8 37 37 H 1.09003 * 109.88633 * 59.09361 * 12 8 6 38 38 H 1.08999 * 110.05792 * 297.93542 * 12 8 6 39 39 H 1.08999 * 109.48254 * 57.14580 * 13 11 10 40 40 H 1.08993 * 109.47868 * 177.18152 * 13 11 10 41 41 H 1.08998 * 109.59783 * 186.72244 * 14 13 11 42 42 H 1.09001 * 109.60314 * 66.25669 * 14 13 11 43 43 H 0.97000 * 120.00193 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.59407 * 185.99916 * 24 15 14 45 45 H 1.08992 * 109.73554 * 65.60113 * 24 15 14 46 46 H 1.08994 * 109.48207 * 182.80858 * 25 11 10 47 47 H 1.09004 * 109.47945 * 302.83447 * 25 11 10 48 48 H 1.07999 * 126.52082 * 180.20563 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2880 2.1283 1.0595 5 6 2.7162 3.3578 0.6640 6 6 3.1103 4.4729 1.5440 7 8 3.4823 5.5256 1.0620 8 7 3.0584 4.3256 2.8827 9 6 2.6292 3.1093 3.5980 10 6 2.1572 3.6070 4.9881 11 6 3.1646 4.7454 5.2669 12 6 3.4204 5.3514 3.8780 13 6 4.4512 4.1766 5.8499 14 6 4.1494 3.5109 7.1976 15 7 3.4500 4.4779 8.0548 16 6 3.9268 4.7735 9.3039 17 1 4.9830 4.6878 9.5129 18 6 3.0529 5.1832 10.3014 19 7 1.7609 4.9661 10.1744 20 14 3.7102 6.0426 11.8241 21 1 3.7390 7.5089 11.5913 22 1 2.8294 5.7422 12.9812 23 1 5.0852 5.5598 12.1103 24 6 2.2305 5.1225 7.5486 25 6 2.5450 5.7780 6.1988 26 6 2.7177 3.3624 -0.6970 27 8 2.2907 2.1527 -1.0929 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.4652 2.4183 3.7063 34 1 1.8068 2.6283 3.0683 35 1 1.1379 3.9902 4.9408 36 1 2.2424 2.8181 5.7354 37 1 2.8004 6.2372 3.7399 38 1 4.4730 5.6158 3.7764 39 1 4.8655 3.4376 5.1641 40 1 5.1714 4.9817 5.9954 41 1 5.0824 3.2086 7.6731 42 1 3.5168 2.6372 7.0404 43 1 1.1501 5.2527 10.8713 44 1 1.8985 5.8828 8.2557 45 1 1.4465 4.3765 7.4190 46 1 3.2454 6.5996 6.3480 47 1 1.6248 6.1605 5.7571 48 1 3.0068 4.1832 -1.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040677273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:16 Heat of formation + Delta-G solvation = 10.157815 kcal Electronic energy + Delta-G solvation = -29390.461239 eV Core-core repulsion = 25447.592554 eV Total energy + Delta-G solvation = -3942.868685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.70528 -40.24184 -38.45814 -35.85542 -35.28901 -34.28224 -32.99949 -30.93123 -30.02972 -29.77922 -29.25882 -27.21963 -24.92586 -24.58182 -23.51674 -22.71377 -22.12480 -21.55407 -20.71324 -19.63026 -18.33253 -17.51167 -17.14557 -16.80854 -16.24949 -15.96610 -15.57664 -14.99775 -14.86596 -14.75930 -14.30521 -13.97789 -13.70685 -13.50485 -13.42296 -13.14897 -13.07812 -12.77075 -12.62295 -12.25536 -12.24355 -12.18132 -11.66182 -11.50773 -11.47384 -11.29345 -11.06404 -10.95522 -10.72770 -10.58165 -10.41127 -10.27688 -10.13568 -9.99639 -9.79588 -9.50201 -9.37793 -9.30844 -8.53244 -8.42289 -6.64510 -5.77476 -3.19289 0.87343 1.77585 2.27230 2.91809 3.20989 3.39083 3.46293 3.47022 3.55452 4.38183 4.44295 4.51243 4.67464 4.71039 4.86366 4.90293 4.97444 5.17448 5.28427 5.28596 5.35180 5.39902 5.44733 5.48535 5.50789 5.62435 5.71081 5.75428 5.80547 5.93638 5.99226 6.09093 6.15012 6.19900 6.31198 6.35051 6.41197 6.56807 6.66972 6.71397 6.78034 6.87583 7.00465 7.21644 7.38821 7.54472 7.68551 7.81576 8.08176 8.47063 9.23375 9.86965 10.43445 11.30777 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.002583 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.153558 B =10838.974880 C =11509.159986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.195 3.805 4 N -0.453 5.453 5 C -0.061 4.061 6 C 0.609 3.391 7 O -0.546 6.546 8 N -0.595 5.595 9 C 0.104 3.896 10 C -0.125 4.125 11 C -0.056 4.056 12 C 0.116 3.884 13 C -0.119 4.119 14 C 0.147 3.853 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.174 3.826 25 C -0.126 4.126 26 C 0.007 3.993 27 O -0.197 6.197 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.253 0.747 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -9.078 -22.108 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.183 5.183 5 C -0.181 4.181 6 C 0.397 3.603 7 O -0.425 6.425 8 N -0.327 5.327 9 C -0.019 4.019 10 C -0.162 4.162 11 C -0.057 4.057 12 C -0.006 4.006 13 C -0.158 4.158 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.166 4.166 26 C -0.067 4.067 27 O -0.083 6.083 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.733 -8.708 -21.675 23.423 hybrid contribution 0.434 0.839 0.090 0.949 sum -1.299 -7.868 -21.585 23.011 Atomic orbital electron populations 1.21799 0.92854 1.03199 1.03115 1.20132 0.97026 0.83871 1.05482 1.26480 0.99496 0.97005 0.78382 1.70921 1.15537 1.02560 1.29293 1.21758 1.09332 0.94162 0.92873 1.16359 0.78286 0.85106 0.80564 1.90814 1.49349 1.27511 1.74778 1.48405 1.63646 1.16472 1.04129 1.22610 1.00309 0.86398 0.92545 1.22916 0.98881 0.99061 0.95388 1.20986 0.96435 0.96042 0.92214 1.22248 1.00474 0.90779 0.87073 1.21925 0.95465 0.99981 0.98434 1.20946 0.96005 0.91383 0.89638 1.44044 1.28272 1.45227 1.13833 1.19199 0.91687 1.40498 0.86684 0.91752 1.25018 0.95605 1.01650 0.97384 1.70031 1.01754 1.48544 1.34376 0.86308 0.78103 0.79847 0.82622 1.21488 1.21823 1.20486 1.20778 0.87745 0.96186 0.90507 1.22117 0.98941 0.97266 0.98270 1.25241 0.99208 0.86581 0.95633 1.84379 1.63415 1.22528 1.38009 0.91496 0.92186 0.90702 0.88761 0.87250 0.91555 0.88881 0.90995 0.88935 0.91340 0.91431 0.93127 0.92125 0.92881 0.96195 0.93684 0.89481 0.96190 0.92431 0.93103 0.75386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.90 37.16 0.37 -0.39 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.20 1.85 7.56 -13.08 -0.10 1.75 16 4 N -0.45 -5.45 8.44 -7.65 -0.06 -5.52 16 5 C -0.06 -0.80 6.81 -83.02 -0.57 -1.37 16 6 C 0.61 9.54 7.85 -12.52 -0.10 9.44 16 7 O -0.55 -9.74 17.23 5.27 0.09 -9.65 16 8 N -0.60 -9.10 3.34 -171.73 -0.57 -9.68 16 9 C 0.10 1.44 5.81 -2.44 -0.01 1.43 16 10 C -0.12 -1.89 4.93 -24.85 -0.12 -2.01 16 11 C -0.06 -0.92 0.55 -154.09 -0.09 -1.00 16 12 C 0.12 1.83 6.07 -3.17 -0.02 1.81 16 13 C -0.12 -2.03 4.74 -26.94 -0.13 -2.16 16 14 C 0.15 2.97 6.19 -3.64 -0.02 2.94 16 15 N -0.59 -14.39 2.98 -172.16 -0.51 -14.90 16 16 C -0.25 -6.79 9.57 -15.06 -0.14 -6.94 16 17 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 18 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 19 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 20 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.17 4.00 5.03 -3.64 -0.02 3.98 16 25 C -0.13 -2.36 4.72 -26.94 -0.13 -2.48 16 26 C 0.01 0.07 11.95 29.96 0.36 0.43 16 27 O -0.20 -1.90 10.73 6.51 0.07 -1.83 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 34 H 0.09 1.26 6.16 -51.93 -0.32 0.94 16 35 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 36 H 0.09 1.48 6.08 -51.93 -0.32 1.17 16 37 H 0.07 1.10 7.78 -51.93 -0.40 0.69 16 38 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 39 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.40 6.47 -51.93 -0.34 0.07 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.09 2.29 6.02 -51.93 -0.31 1.97 16 45 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 48 H 0.23 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -32.05 376.36 -8.17 -40.22 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.46 Total: -0.73 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.99 Total: 5.06 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.53 Total: -55.32 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.16 Total: -11.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.05 -8.17 -40.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040677273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.374 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds