Wall clock time and date at job start Tue Mar 31 2020 17:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46871 * 2 1 4 4 O 1.33489 * 126.83148 * 270.10631 * 3 2 1 5 5 N 1.20652 * 113.15876 * 180.30030 * 4 3 2 6 6 C 1.30021 * 112.30077 * 359.76068 * 5 4 3 7 7 C 1.37359 * 126.82347 * 90.00378 * 3 2 1 8 8 C 1.47395 * 128.56983 * 359.97438 * 7 3 2 9 9 O 1.21604 * 119.99571 * 5.12560 * 8 7 3 10 10 N 1.34776 * 119.99767 * 185.11960 * 8 7 3 11 11 C 1.47493 * 125.65656 * 174.66513 * 10 8 7 12 12 C 1.55021 * 104.89852 * 156.24817 * 11 10 8 13 13 C 1.54520 * 101.53183 * 36.38103 * 12 11 10 14 14 C 1.47172 * 125.66544 * 354.97518 * 10 8 7 15 15 C 1.52272 * 110.20720 * 83.58760 * 13 12 11 16 16 C 1.53312 * 109.41882 * 182.19821 * 15 13 12 17 17 N 1.46921 * 108.70932 * 306.49097 * 16 15 13 18 18 C 1.36939 * 120.56771 * 234.25835 * 17 16 15 19 19 H 1.08001 * 120.00294 * 151.84054 * 18 17 16 20 20 C 1.38810 * 119.99801 * 331.84158 * 18 17 16 21 21 N 1.31619 * 119.99955 * 334.38567 * 20 18 17 22 22 Si 1.86795 * 120.00393 * 154.38164 * 20 18 17 23 23 H 1.48503 * 109.47259 * 84.99714 * 22 20 18 24 24 H 1.48502 * 109.47349 * 204.99643 * 22 20 18 25 25 H 1.48503 * 109.47132 * 324.99776 * 22 20 18 26 26 C 1.46939 * 118.87192 * 54.23193 * 17 16 15 27 27 C 1.52270 * 110.20439 * 206.77397 * 13 12 11 28 28 H 1.08996 * 109.47371 * 60.00023 * 1 2 3 29 29 H 1.09007 * 109.46789 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47009 * 299.99542 * 1 2 3 31 31 H 1.09007 * 109.47143 * 240.00589 * 2 1 3 32 32 H 1.08994 * 109.47465 * 120.00752 * 2 1 3 33 33 H 1.07998 * 127.33730 * 179.97438 * 6 5 4 34 34 H 1.09000 * 110.35220 * 275.10817 * 11 10 8 35 35 H 1.09003 * 110.35044 * 37.39257 * 11 10 8 36 36 H 1.08997 * 111.01662 * 278.31680 * 12 11 10 37 37 H 1.09005 * 111.04114 * 154.45478 * 12 11 10 38 38 H 1.08998 * 109.90442 * 300.60721 * 14 10 8 39 39 H 1.09001 * 109.90824 * 61.68457 * 14 10 8 40 40 H 1.09002 * 109.47972 * 302.18353 * 15 13 12 41 41 H 1.09001 * 109.47812 * 62.21011 * 15 13 12 42 42 H 1.08995 * 109.59742 * 186.72679 * 16 15 13 43 43 H 1.08998 * 109.59788 * 66.25942 * 16 15 13 44 44 H 0.97000 * 120.00196 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.59851 * 185.99257 * 26 17 16 46 46 H 1.08998 * 109.72443 * 65.60187 * 26 17 16 47 47 H 1.08996 * 109.48661 * 297.77308 * 27 13 12 48 48 H 1.09006 * 109.48427 * 57.80000 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2971 2.1760 -1.0685 5 7 2.6938 3.2791 -0.7833 6 6 2.7610 3.4623 0.5022 7 6 2.3068 2.1970 1.0995 8 6 2.1825 1.8467 2.5258 9 8 1.8813 0.7139 2.8496 10 7 2.4027 2.7819 3.4711 11 6 2.2067 2.6010 4.9217 12 6 3.1309 3.6551 5.5833 13 6 3.0060 4.8380 4.5970 14 6 2.8727 4.1549 3.2266 15 6 1.7611 5.6563 4.9121 16 6 1.6251 6.7912 3.8904 17 7 2.8813 7.5526 3.8616 18 6 2.8785 8.9084 4.0539 19 1 3.7445 9.3956 4.4771 20 6 1.7626 9.6565 3.7050 21 7 0.9437 9.2205 2.7714 22 14 1.4231 11.2821 4.5603 23 1 2.1835 12.3647 3.8858 24 1 -0.0298 11.5823 4.4941 25 1 1.8456 11.1916 5.9811 26 6 4.1409 6.8343 3.6235 27 6 4.2607 5.6993 4.6472 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.0821 4.3535 1.0210 34 1 1.1666 2.7869 5.1897 35 1 2.5025 1.5957 5.2217 36 1 4.1588 3.2962 5.6351 37 1 2.7650 3.9306 6.5724 38 1 3.8413 4.1323 2.7273 39 1 2.1502 4.6904 2.6107 40 1 0.8817 5.0143 4.8616 41 1 1.8469 6.0773 5.9139 42 1 0.8058 7.4487 4.1812 43 1 1.4284 6.3729 2.9033 44 1 0.1637 9.7431 2.5278 45 1 4.9803 7.5203 3.7382 46 1 4.1430 6.4194 2.6156 47 1 4.3724 6.1210 5.6461 48 1 5.1314 5.0874 4.4115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040870521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:34 Heat of formation + Delta-G solvation = 47.845666 kcal Electronic energy + Delta-G solvation = -30248.293222 eV Core-core repulsion = 26307.058805 eV Total energy + Delta-G solvation = -3941.234417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.96204 -40.45656 -38.55793 -35.93135 -34.78640 -33.87109 -33.02991 -31.31368 -30.40887 -30.14054 -29.46186 -26.76879 -25.57186 -24.29575 -24.02532 -22.85746 -22.34152 -21.72769 -20.45258 -19.49012 -18.25744 -17.78051 -17.67875 -16.80036 -16.58487 -16.00940 -15.52403 -14.94476 -14.75292 -14.30771 -14.11764 -14.05700 -13.87581 -13.69484 -13.32004 -13.22851 -13.00990 -12.78979 -12.60973 -12.34915 -12.18337 -11.99076 -11.70316 -11.62672 -11.42706 -11.32150 -11.06372 -11.00833 -10.72519 -10.56683 -10.42457 -10.36494 -10.27200 -10.07383 -9.92115 -9.62396 -9.55378 -9.46225 -8.62827 -8.46658 -6.76036 -5.87890 -3.24510 0.98305 1.79483 2.66159 3.00723 3.15176 3.34136 3.42539 3.45140 4.18679 4.24128 4.45506 4.47289 4.59198 4.66648 4.82183 4.95472 4.96627 5.03826 5.16381 5.24384 5.28312 5.31375 5.51312 5.52956 5.56590 5.60864 5.68985 5.74991 5.79599 5.84047 5.85933 5.88748 5.97481 5.98524 6.09213 6.17380 6.24101 6.36721 6.50106 6.54534 6.60809 6.73974 6.84663 7.17997 7.43241 7.46766 7.77377 8.04853 8.15639 8.36733 9.12734 9.78296 10.35274 11.20492 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003509 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.160088 B = 7977.797231 C = 8908.139770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.046 3.954 4 O 0.092 5.908 5 N -0.353 5.353 6 C 0.022 3.978 7 C -0.258 4.258 8 C 0.614 3.386 9 O -0.543 6.543 10 N -0.606 5.606 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.054 4.054 14 C 0.100 3.900 15 C -0.128 4.128 16 C 0.172 3.828 17 N -0.588 5.588 18 C -0.262 4.262 19 H 0.065 0.935 20 C 0.009 3.991 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.119 4.119 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.207 0.793 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.019 0.981 44 H 0.254 0.746 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.066 0.934 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -17.396 -0.430 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.019 4.019 4 O 0.033 5.967 5 N -0.058 5.058 6 C -0.161 4.161 7 C -0.265 4.265 8 C 0.404 3.596 9 O -0.423 6.423 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.166 4.166 13 C -0.055 4.055 14 C -0.022 4.022 15 C -0.167 4.167 16 C 0.046 3.954 17 N -0.311 5.311 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.159 4.159 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.085 0.915 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.205 -17.199 -1.483 17.403 hybrid contribution -0.308 0.956 1.134 1.515 sum 1.896 -16.242 -0.349 16.356 Atomic orbital electron populations 1.21717 0.92949 1.02905 1.02756 1.20376 0.97166 0.85566 1.05485 1.24868 0.95673 0.96036 0.85313 1.84581 1.61050 1.17798 1.33302 1.73700 1.16146 0.98206 1.17723 1.26963 1.00256 0.99490 0.89354 1.21983 1.14083 0.95367 0.95103 1.16337 0.76959 0.83671 0.82662 1.90750 1.49897 1.19514 1.82095 1.48301 1.65457 1.12977 1.07074 1.22274 0.99951 0.99980 0.78944 1.22914 0.99629 0.94922 0.99110 1.20962 0.98084 0.94148 0.92282 1.22581 0.99570 0.80910 0.99159 1.22103 0.94554 0.98153 1.01917 1.20733 0.90095 0.90770 0.93795 1.44023 1.00532 1.03547 1.82953 1.19068 1.02084 0.82597 1.35360 0.91753 1.24949 0.99938 0.97498 0.96660 1.70138 1.16042 1.39727 1.27515 0.86491 0.77244 0.84016 0.80124 1.21282 1.21564 1.20513 1.20947 0.90551 0.92662 0.94134 1.21949 0.94427 0.97595 1.01920 0.92233 0.91020 0.91852 0.89246 0.86816 0.77630 0.91185 0.90495 0.90827 0.89687 0.91279 0.89931 0.93093 0.91857 0.90357 0.96322 0.93602 0.92560 0.96734 0.91498 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.45 6.10 -27.88 -0.17 -0.62 16 3 C 0.05 0.57 6.80 -34.63 -0.24 0.33 16 4 O 0.09 1.24 11.06 18.66 0.21 1.45 16 5 N -0.35 -5.34 12.01 31.81 0.38 -4.96 16 6 C 0.02 0.31 10.77 -14.72 -0.16 0.16 16 7 C -0.26 -3.64 6.36 -102.89 -0.65 -4.30 16 8 C 0.61 9.17 7.84 -12.53 -0.10 9.07 16 9 O -0.54 -8.82 15.45 5.27 0.08 -8.74 16 10 N -0.61 -8.46 3.33 -171.94 -0.57 -9.04 16 11 C 0.11 1.36 6.61 -2.43 -0.02 1.35 16 12 C -0.13 -1.49 5.99 -24.87 -0.15 -1.63 16 13 C -0.05 -0.77 0.53 -154.09 -0.08 -0.85 16 14 C 0.10 1.41 3.23 -3.31 -0.01 1.40 16 15 C -0.13 -2.15 4.78 -26.94 -0.13 -2.28 16 16 C 0.17 3.73 5.10 -3.65 -0.02 3.71 16 17 N -0.59 -13.57 2.97 -172.16 -0.51 -14.09 16 18 C -0.26 -6.86 9.50 -15.06 -0.14 -7.00 16 19 H 0.06 1.67 7.95 -52.49 -0.42 1.25 16 20 C 0.01 0.25 4.66 -17.43 -0.08 0.17 16 21 N -0.89 -25.13 11.78 55.49 0.65 -24.48 16 22 Si 0.89 21.01 29.62 -169.99 -5.04 15.97 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.14 2.71 6.24 -3.64 -0.02 2.68 16 27 C -0.12 -1.79 4.70 -26.94 -0.13 -1.92 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.16 6.70 -51.93 -0.35 0.82 16 33 H 0.21 2.87 5.17 -52.49 -0.27 2.60 16 34 H 0.07 0.86 7.76 -51.93 -0.40 0.45 16 35 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 37 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 38 H 0.07 0.93 6.53 -51.93 -0.34 0.59 16 39 H 0.08 1.32 4.90 -51.93 -0.25 1.06 16 40 H 0.05 0.80 7.49 -51.93 -0.39 0.41 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.95 6.31 -51.93 -0.33 1.63 16 43 H 0.02 0.43 6.53 -51.93 -0.34 0.09 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.06 1.07 7.93 -51.92 -0.41 0.66 16 46 H 0.01 0.28 7.47 -51.93 -0.39 -0.11 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -30.09 370.70 -8.17 -38.26 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.23 Total: 0.64 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.73 Total: -0.61 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.05 Total: -52.56 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.29 Total: -7.29 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.04 Total: 15.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.09 -8.17 -38.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040870521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.106 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds