Wall clock time and date at job start Tue Mar 31 2020 17:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46907 * 2 1 4 4 C 1.35313 * 126.66314 * 90.30662 * 3 2 1 5 5 C 1.42271 * 103.91835 * 180.11097 * 4 3 2 6 6 C 1.48337 * 126.93657 * 179.91172 * 5 4 3 7 7 O 1.21487 * 119.99926 * 359.71171 * 6 5 4 8 8 N 1.34777 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.47480 * 125.66545 * 359.41858 * 8 6 5 10 10 C 1.55242 * 104.79352 * 155.92535 * 9 8 6 11 11 C 1.54510 * 101.43578 * 36.66823 * 10 9 8 12 12 C 1.47178 * 125.65944 * 179.72566 * 8 6 5 13 13 C 1.52275 * 110.20482 * 83.42223 * 11 10 9 14 14 C 1.53320 * 109.41573 * 182.19546 * 13 11 10 15 15 N 1.46924 * 108.71214 * 306.49140 * 14 13 11 16 16 C 1.36939 * 120.56776 * 234.21454 * 15 14 13 17 17 H 1.08004 * 119.99485 * 27.94161 * 16 15 14 18 18 C 1.38804 * 119.99909 * 207.93940 * 16 15 14 19 19 N 1.31620 * 120.00564 * 17.46160 * 18 16 15 20 20 Si 1.86806 * 119.99789 * 197.45329 * 18 16 15 21 21 H 1.48494 * 109.47189 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46968 * 120.00655 * 20 18 16 23 23 H 1.48496 * 109.47011 * 240.00305 * 20 18 16 24 24 C 1.46935 * 118.87082 * 54.23214 * 15 14 13 25 25 C 1.52278 * 110.20606 * 206.60746 * 11 10 9 26 26 N 1.30978 * 106.12766 * 359.64830 * 5 4 3 27 27 O 1.20907 * 111.43738 * 0.22736 * 26 5 4 28 28 H 1.09007 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47331 * 300.00007 * 1 2 3 30 30 H 1.09001 * 109.47058 * 60.00722 * 1 2 3 31 31 H 1.08995 * 109.47331 * 239.99993 * 2 1 3 32 32 H 1.08998 * 109.46912 * 120.00022 * 2 1 3 33 33 H 1.08003 * 128.04212 * 0.02562 * 4 3 2 34 34 H 1.08997 * 110.35464 * 274.88103 * 9 8 6 35 35 H 1.09001 * 110.35154 * 37.16063 * 9 8 6 36 36 H 1.09001 * 111.20139 * 278.56838 * 10 9 8 37 37 H 1.09011 * 110.94283 * 154.64710 * 10 9 8 38 38 H 1.09002 * 109.90429 * 300.83412 * 12 8 6 39 39 H 1.08994 * 109.90613 * 61.91569 * 12 8 6 40 40 H 1.08993 * 109.48336 * 302.17784 * 13 11 10 41 41 H 1.08997 * 109.47913 * 62.21425 * 13 11 10 42 42 H 1.08998 * 109.59678 * 186.72503 * 14 13 11 43 43 H 1.09003 * 109.59868 * 66.25792 * 14 13 11 44 44 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.60154 * 185.99112 * 24 15 14 46 46 H 1.08997 * 109.72752 * 65.60046 * 24 15 14 47 47 H 1.09001 * 109.48264 * 297.77889 * 25 11 10 48 48 H 1.08999 * 109.47722 * 57.79569 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3071 2.1807 1.0854 5 6 2.7391 3.4196 0.5354 6 6 3.1669 4.6265 1.2842 7 8 3.1654 4.6199 2.4990 8 7 3.5520 5.7323 0.6168 9 6 3.6080 5.8756 -0.8500 10 6 3.4891 7.4025 -1.1039 11 6 4.2935 7.9743 0.0849 12 6 3.9927 6.9952 1.2308 13 6 5.7811 7.9789 -0.2404 14 6 6.5660 8.4977 0.9702 15 7 6.0108 9.7979 1.3698 16 6 6.8212 10.8958 1.4839 17 1 7.7188 10.9687 0.8876 18 6 6.4891 11.9150 2.3658 19 7 5.6154 11.6963 3.3255 20 14 7.2824 13.5971 2.1905 21 1 8.2222 13.5839 1.0409 22 1 6.2302 14.6188 1.9575 23 1 8.0250 13.9261 3.4337 24 6 4.5711 9.9002 1.6455 25 6 3.7993 9.3726 0.4304 26 7 2.6883 3.2775 -0.7657 27 8 2.2986 2.1755 -1.0750 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2177 1.9101 2.1272 34 1 4.5564 5.4980 -1.2319 35 1 2.7746 5.3484 -1.3144 36 1 2.4497 7.7287 -1.0657 37 1 3.9478 7.6763 -2.0541 38 1 3.2010 7.3963 1.8635 39 1 4.8915 6.8258 1.8236 40 1 6.1048 6.9652 -0.4762 41 1 5.9638 8.6275 -1.0972 42 1 7.6159 8.6153 0.7021 43 1 6.4739 7.7916 1.7955 44 1 5.3837 12.4084 3.9420 45 1 4.3059 10.9424 1.8228 46 1 4.3215 9.3050 2.5238 47 1 3.9615 10.0358 -0.4193 48 1 2.7353 9.3346 0.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040919792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:38 Heat of formation + Delta-G solvation = 49.794481 kcal Electronic energy + Delta-G solvation = -29303.818230 eV Core-core repulsion = 25362.668320 eV Total energy + Delta-G solvation = -3941.149910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.31298 -40.36313 -38.47548 -35.91517 -35.29947 -34.11804 -33.01746 -31.15096 -30.49453 -30.11659 -29.15849 -27.12157 -25.28090 -24.53880 -23.80110 -23.08282 -22.32004 -22.05319 -20.68229 -19.26626 -18.19889 -18.04972 -17.48330 -17.02371 -16.40647 -15.98528 -15.50254 -15.04486 -14.85125 -14.54879 -14.16151 -14.10517 -13.81029 -13.78245 -13.26246 -13.10125 -13.08207 -12.86818 -12.68049 -12.37728 -12.21214 -12.06124 -11.94765 -11.59944 -11.39738 -11.32155 -11.18723 -10.90214 -10.71928 -10.65031 -10.41275 -10.28471 -10.19991 -10.14197 -9.83086 -9.74601 -9.52605 -9.35889 -8.60159 -8.44497 -6.64649 -5.77067 -3.19374 0.91955 1.43681 2.60211 2.82954 3.10377 3.37855 3.45928 3.48042 3.74846 4.09641 4.50351 4.50982 4.65206 4.66910 4.71033 4.77255 4.87381 5.00953 5.07518 5.20090 5.31517 5.36055 5.40011 5.41226 5.47186 5.58245 5.64485 5.69146 5.70516 5.74294 5.94527 5.99741 6.08250 6.12467 6.15828 6.26560 6.33361 6.51465 6.60629 6.65969 6.74370 6.83866 6.98125 7.36433 7.43557 7.67555 7.74146 7.81482 8.05126 8.46715 9.22896 9.86459 10.43088 11.31189 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.002380 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.570244 B =11762.326517 C =12053.155968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.033 4.033 4 C -0.181 4.181 5 C -0.014 4.014 6 C 0.604 3.396 7 O -0.524 6.524 8 N -0.599 5.599 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.055 4.055 12 C 0.119 3.881 13 C -0.119 4.119 14 C 0.143 3.857 15 N -0.590 5.590 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.168 3.832 25 C -0.126 4.126 26 N -0.329 5.329 27 O 0.117 5.883 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.061 0.939 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -22.250 -10.369 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.204 4.204 5 C -0.173 4.173 6 C 0.390 3.610 7 O -0.399 6.399 8 N -0.332 5.332 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.056 4.056 12 C -0.002 4.002 13 C -0.158 4.158 14 C 0.017 3.983 15 N -0.313 5.313 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.043 3.957 25 C -0.165 4.165 26 N -0.031 5.031 27 O 0.043 5.957 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.197 0.803 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.080 0.920 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.881 -21.315 -10.520 25.742 hybrid contribution 0.279 0.582 0.722 0.968 sum -9.602 -20.733 -9.798 24.861 Atomic orbital electron populations 1.21815 0.93332 1.02860 1.03029 1.20150 0.96751 0.86071 1.05001 1.24509 1.02446 0.97190 0.85507 1.22429 1.04830 0.91567 1.01540 1.23497 1.05990 0.97792 0.90058 1.16486 0.78280 0.80373 0.85897 1.90818 1.54626 1.82240 1.12243 1.48470 1.63654 1.12746 1.08357 1.22597 1.02321 0.97634 0.79811 1.22952 1.01040 0.93183 0.99347 1.20986 0.96254 0.95453 0.92877 1.22240 1.00533 0.81376 0.96076 1.21924 0.93564 0.99678 1.00636 1.20966 0.95847 0.88371 0.93164 1.44043 1.03314 1.04260 1.79698 1.19217 1.06043 0.95897 1.16900 0.91679 1.25043 0.99649 0.99747 0.95297 1.70045 1.36644 1.31697 1.16208 0.86247 0.78641 0.84609 0.77419 1.20292 1.21596 1.21782 1.20832 0.82411 1.01541 0.90958 1.22112 0.98702 0.93662 1.02066 1.74270 1.14256 0.98981 1.15632 1.84783 1.59988 1.17366 1.33550 0.91118 0.91932 0.91963 0.89096 0.88252 0.80274 0.91205 0.89754 0.90760 0.89787 0.90894 0.90229 0.93163 0.91741 0.92703 0.96374 0.93685 0.89318 0.96260 0.91978 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.16 0.37 -0.23 16 2 C -0.04 -0.18 6.50 -27.88 -0.18 -0.36 16 3 C -0.03 -0.28 6.73 -35.35 -0.24 -0.52 16 4 C -0.18 -1.92 10.92 -39.08 -0.43 -2.35 16 5 C -0.01 -0.20 7.02 -82.53 -0.58 -0.77 16 6 C 0.60 10.07 7.88 -12.10 -0.10 9.97 16 7 O -0.52 -10.26 17.28 5.38 0.09 -10.17 16 8 N -0.60 -9.54 3.33 -171.46 -0.57 -10.11 16 9 C 0.10 1.31 5.87 -2.32 -0.01 1.30 16 10 C -0.13 -1.67 6.00 -24.75 -0.15 -1.82 16 11 C -0.05 -0.90 0.53 -154.09 -0.08 -0.98 16 12 C 0.12 2.07 5.05 -3.31 -0.02 2.06 16 13 C -0.12 -2.02 4.78 -26.94 -0.13 -2.15 16 14 C 0.14 2.99 6.22 -3.65 -0.02 2.97 16 15 N -0.59 -14.65 2.98 -172.16 -0.51 -15.17 16 16 C -0.25 -6.86 9.57 -15.06 -0.14 -7.01 16 17 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 19 N -0.90 -26.30 11.20 55.49 0.62 -25.68 16 20 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.17 3.96 5.05 -3.64 -0.02 3.95 16 25 C -0.13 -2.33 4.70 -26.94 -0.13 -2.45 16 26 N -0.33 -4.12 9.30 33.29 0.31 -3.81 16 27 O 0.12 1.21 11.18 17.25 0.19 1.40 16 28 H 0.07 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 35 H 0.08 1.07 6.22 -51.93 -0.32 0.75 16 36 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 37 H 0.08 0.99 8.01 -51.92 -0.42 0.57 16 38 H 0.07 1.36 7.59 -51.93 -0.39 0.96 16 39 H 0.08 1.54 6.08 -51.93 -0.32 1.23 16 40 H 0.05 0.77 7.47 -51.93 -0.39 0.38 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 2.35 6.02 -51.93 -0.31 2.04 16 46 H 0.02 0.48 7.47 -51.93 -0.39 0.10 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -32.19 376.22 -8.63 -40.81 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.46 Total: -1.23 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.94 Total: 1.55 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.15 Total: -54.76 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.29 Total: -8.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.19 -8.63 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040919792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.609 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds