Wall clock time and date at job start Tue Mar 31 2020 17:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47046 * 2 1 4 4 O 1.33494 * 126.83070 * 270.02904 * 3 2 1 5 5 N 1.20650 * 113.15769 * 179.97438 * 4 3 2 6 6 C 1.30019 * 112.30166 * 359.71474 * 5 4 3 7 7 C 1.50706 * 127.33705 * 180.30242 * 6 5 4 8 8 C 1.37363 * 126.82812 * 89.99785 * 3 2 1 9 9 C 1.47393 * 128.56430 * 0.02562 * 8 3 2 10 10 O 1.21612 * 119.99868 * 89.99827 * 9 8 3 11 11 N 1.34777 * 120.00164 * 270.00289 * 9 8 3 12 12 C 1.48266 * 127.72406 * 0.02562 * 11 9 8 13 13 C 1.54760 * 104.67382 * 141.29040 * 12 11 9 14 14 C 1.52879 * 104.40643 * 23.63901 * 13 12 11 15 15 C 1.53707 * 111.74756 * 237.42374 * 14 13 12 16 16 C 1.54586 * 102.95098 * 273.44701 * 15 14 13 17 17 N 1.47139 * 107.32940 * 339.04176 * 16 15 14 18 18 C 1.36942 * 125.60313 * 179.08879 * 17 16 15 19 19 H 1.07998 * 119.99192 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99950 * 359.97159 * 18 17 16 21 21 N 1.31615 * 120.00294 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99540 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47235 * 60.00460 * 22 20 18 24 24 H 1.48501 * 109.47026 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47578 * 299.99777 * 22 20 18 26 26 C 1.47708 * 108.78545 * 359.06280 * 17 16 15 27 27 C 1.48491 * 127.71944 * 180.02562 * 11 9 8 28 28 H 1.08993 * 109.47519 * 300.00131 * 1 2 3 29 29 H 1.09000 * 109.47384 * 59.99863 * 1 2 3 30 30 H 1.09003 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47109 * 240.00150 * 2 1 3 32 32 H 1.09000 * 109.47384 * 120.00137 * 2 1 3 33 33 H 1.09002 * 109.47122 * 270.14529 * 7 6 5 34 34 H 1.09003 * 109.46757 * 30.14688 * 7 6 5 35 35 H 1.08993 * 109.46783 * 150.13951 * 7 6 5 36 36 H 1.09005 * 110.39272 * 22.49972 * 12 11 9 37 37 H 1.08996 * 110.50143 * 260.14186 * 12 11 9 38 38 H 1.08998 * 110.44793 * 264.90340 * 13 12 11 39 39 H 1.09004 * 110.54857 * 142.42302 * 13 12 11 40 40 H 1.09002 * 110.74940 * 155.03206 * 15 14 13 41 41 H 1.08999 * 110.74824 * 31.86685 * 15 14 13 42 42 H 1.08997 * 109.86768 * 98.47246 * 16 15 14 43 43 H 1.08992 * 109.87275 * 219.45909 * 16 15 14 44 44 H 0.97001 * 120.00142 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.38406 * 141.40179 * 26 17 16 46 46 H 1.08995 * 110.38778 * 263.77636 * 26 17 16 47 47 H 1.08997 * 110.47466 * 99.56513 * 27 11 9 48 48 H 1.08996 * 110.47310 * 336.95014 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2985 2.1755 -1.0685 5 7 2.6889 3.2809 -0.7833 6 6 2.7485 3.4667 0.5022 7 6 3.1810 4.7158 1.2260 8 6 2.3067 2.1972 1.0995 9 6 2.1832 1.8465 2.5258 10 8 3.1254 1.3512 3.1139 11 7 1.0262 2.0748 3.1782 12 6 -0.2207 2.6648 2.6345 13 6 -1.3599 1.8570 3.3013 14 6 -0.7344 1.3030 4.5816 15 6 -0.8173 -0.2308 4.6385 16 6 -2.2090 -0.4795 5.2636 17 7 -2.5977 0.7503 5.9717 18 6 -3.7742 0.9447 6.6450 19 1 -3.9663 1.8878 7.1351 20 6 -4.7197 -0.0702 6.6975 21 7 -4.4857 -1.2192 6.0998 22 14 -6.3241 0.1948 7.6166 23 1 -7.0571 1.3370 7.0138 24 1 -7.1565 -1.0315 7.5231 25 1 -6.0348 0.4896 9.0429 26 6 -1.5099 1.7405 5.8372 27 6 0.7150 1.7917 4.6023 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2561 4.6798 1.4022 34 1 2.9412 5.5889 0.6191 35 1 2.6584 4.7820 2.1802 36 1 -0.2555 2.5476 1.5514 37 1 -0.2938 3.7183 2.9044 38 1 -1.6806 1.0431 2.6511 39 1 -2.2016 2.5074 3.5392 40 1 -0.0303 -0.6367 5.2742 41 1 -0.7616 -0.6579 3.6373 42 1 -2.9332 -0.7002 4.4795 43 1 -2.1568 -1.3125 5.9647 44 1 -5.1463 -1.9286 6.1368 45 1 -1.9215 2.7404 5.6996 46 1 -0.8612 1.7132 6.7128 47 1 0.8028 2.6993 5.1994 48 1 1.3739 1.0143 4.9892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041821669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:32 Heat of formation + Delta-G solvation = 51.859154 kcal Electronic energy + Delta-G solvation = -30055.267763 eV Core-core repulsion = 26114.207384 eV Total energy + Delta-G solvation = -3941.060379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.07499 -40.24874 -38.42126 -35.74427 -35.06389 -34.74622 -32.67154 -30.81727 -30.11431 -29.40798 -29.06070 -28.52301 -26.13612 -24.81191 -24.04107 -23.20899 -22.66854 -20.55285 -20.24263 -19.53577 -18.86353 -17.96146 -17.53795 -16.85673 -16.59232 -15.81787 -15.68570 -15.01063 -14.72283 -14.46729 -14.12933 -13.96509 -13.78103 -13.68600 -13.50828 -13.22832 -13.12652 -12.83911 -12.73933 -12.57770 -12.23000 -12.06537 -11.85795 -11.70337 -11.57778 -11.33229 -11.13371 -11.08496 -10.91969 -10.76618 -10.36429 -10.22743 -10.08538 -10.06093 -9.96810 -9.78957 -9.67541 -9.57278 -8.76084 -8.61801 -6.85823 -5.73648 -3.07192 1.09801 1.69087 2.29456 2.56285 2.98887 3.38317 3.43053 3.44024 3.84437 3.99531 4.35851 4.47241 4.62208 4.71743 4.79179 4.86582 4.92044 4.93724 5.03607 5.18372 5.20098 5.24470 5.33592 5.38290 5.44643 5.48137 5.52514 5.58039 5.67125 5.73541 5.74995 5.82751 5.86117 5.88033 5.95542 5.99538 6.20930 6.33932 6.35175 6.47222 6.56994 6.67283 6.79801 7.42091 7.53202 7.60156 7.80211 7.98277 8.00433 8.22813 9.19375 9.79549 10.45494 11.37721 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.002969 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.362400 B = 9427.592972 C = 9838.860533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.048 4.048 3 C 0.023 3.977 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.054 3.946 7 C -0.076 4.076 8 C -0.241 4.241 9 C 0.619 3.381 10 O -0.530 6.530 11 N -0.608 5.608 12 C 0.099 3.901 13 C -0.109 4.109 14 C -0.086 4.086 15 C -0.130 4.130 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.151 3.849 27 C 0.123 3.877 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.065 6.974 -12.752 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 C -0.041 4.041 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.109 4.109 7 C -0.134 4.134 8 C -0.249 4.249 9 C 0.405 3.595 10 O -0.407 6.407 11 N -0.341 5.341 12 C -0.024 4.024 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.168 4.168 16 C 0.056 3.944 17 N -0.330 5.330 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.025 3.975 27 C 0.001 3.999 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.092 0.908 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.727 7.304 -13.505 19.943 hybrid contribution -0.983 -0.166 1.188 1.551 sum 11.744 7.138 -12.318 18.455 Atomic orbital electron populations 1.21858 0.92486 1.03686 1.03121 1.20293 0.97374 0.85639 1.05312 1.24706 0.97975 0.96366 0.85014 1.84521 1.61588 1.17436 1.32960 1.73606 1.17530 0.98724 1.16526 1.24725 1.00626 0.96466 0.89039 1.20211 1.02468 0.91168 0.99531 1.21838 1.12644 0.95392 0.94989 1.16364 0.81405 0.78039 0.83662 1.90832 1.37812 1.44204 1.67850 1.49012 1.11775 1.60877 1.12419 1.22618 0.83363 0.97653 0.98767 1.22327 0.96631 0.99865 0.95876 1.21712 0.92923 0.97434 0.96675 1.22829 1.00704 0.92965 1.00337 1.21184 0.89049 0.89096 0.95092 1.44512 1.15694 1.10821 1.61961 1.18992 0.91902 0.99031 1.25803 0.90540 1.24781 0.98689 0.96130 1.00721 1.69950 1.35044 1.04344 1.47538 0.86218 0.83289 0.76812 0.79536 1.21203 1.21639 1.21207 1.21437 0.89985 0.93466 0.92641 1.22279 0.95901 1.01142 0.80607 0.91546 0.91854 0.90512 0.88675 0.88202 0.89627 0.89899 0.89893 0.90904 0.90872 0.90697 0.89543 0.92392 0.92291 0.93658 0.94061 0.93732 0.94092 0.96176 0.90753 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.41 6.38 -27.88 -0.18 -0.59 16 3 C 0.02 0.25 6.80 -34.62 -0.24 0.02 16 4 O 0.10 1.13 11.06 18.65 0.21 1.33 16 5 N -0.36 -4.47 12.01 34.78 0.42 -4.05 16 6 C 0.05 0.63 7.59 -79.76 -0.61 0.03 16 7 C -0.08 -0.68 10.49 36.01 0.38 -0.30 16 8 C -0.24 -3.03 5.14 -102.90 -0.53 -3.56 16 9 C 0.62 8.82 7.69 -12.53 -0.10 8.72 16 10 O -0.53 -9.35 17.39 5.27 0.09 -9.26 16 11 N -0.61 -7.88 3.33 -170.83 -0.57 -8.45 16 12 C 0.10 1.11 6.63 -2.14 -0.01 1.10 16 13 C -0.11 -1.48 6.28 -25.87 -0.16 -1.64 16 14 C -0.09 -1.32 0.82 -153.73 -0.13 -1.45 16 15 C -0.13 -2.27 5.83 -25.53 -0.15 -2.42 16 16 C 0.18 4.14 5.34 -2.86 -0.02 4.12 16 17 N -0.60 -14.48 3.41 -170.20 -0.58 -15.06 16 18 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.26 10.31 55.49 0.57 -25.69 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.15 2.84 6.07 -2.89 -0.02 2.83 16 27 C 0.12 1.69 6.19 -2.96 -0.02 1.67 16 28 H 0.07 0.64 6.42 -51.93 -0.33 0.31 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.04 6.99 -51.93 -0.36 0.68 16 39 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 40 H 0.06 1.00 7.73 -51.93 -0.40 0.59 16 41 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 42 H 0.05 1.15 7.39 -51.93 -0.38 0.77 16 43 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 46 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 47 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 48 H 0.09 1.27 7.35 -51.93 -0.38 0.89 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -31.79 385.52 -8.27 -40.06 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.55 Total: -2.28 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.65 Total: 1.06 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.16 Total: -53.24 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.30 Total: -7.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.79 -8.27 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041821669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.919 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds