Wall clock time and date at job start Tue Mar 31 2020 18:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46684 * 2 1 4 4 N 1.30611 * 125.42231 * 89.98266 * 3 2 1 5 5 C 1.33691 * 108.99712 * 179.74445 * 4 3 2 6 6 C 1.50700 * 126.27937 * 180.26439 * 5 4 3 7 7 C 1.36348 * 107.44782 * 0.42996 * 5 4 3 8 8 C 1.46723 * 126.63991 * 179.83776 * 7 5 4 9 9 O 1.21684 * 120.00228 * 6.85962 * 8 7 5 10 10 N 1.34774 * 119.99521 * 186.85917 * 8 7 5 11 11 C 1.44449 * 117.12598 * 6.01435 * 10 8 7 12 12 C 1.50923 * 113.26258 * 149.63149 * 11 10 8 13 13 C 1.48842 * 116.03844 * 32.31640 * 12 11 10 14 14 H 1.08994 * 107.13774 * 200.37909 * 13 12 11 15 15 C 1.54567 * 113.99492 * 83.39942 * 13 12 11 16 16 C 1.55326 * 100.23158 * 191.26528 * 15 13 12 17 17 N 1.47469 * 105.22366 * 36.14642 * 16 15 13 18 18 C 1.36942 * 125.62478 * 159.84591 * 17 16 15 19 19 H 1.07999 * 119.99523 * 190.50398 * 18 17 16 20 20 C 1.38808 * 120.00078 * 10.50177 * 18 17 16 21 21 N 1.31616 * 120.00324 * 9.97847 * 20 18 17 22 22 Si 1.86796 * 119.99742 * 189.96918 * 20 18 17 23 23 H 1.48501 * 109.47086 * 94.75735 * 22 20 18 24 24 H 1.48502 * 109.47496 * 214.75540 * 22 20 18 25 25 H 1.48498 * 109.47348 * 334.76251 * 22 20 18 26 26 C 1.48452 * 108.74130 * 339.86575 * 17 16 15 27 27 H 1.09002 * 109.94942 * 235.82910 * 26 17 16 28 28 C 1.43937 * 117.11696 * 186.04054 * 10 8 7 29 29 O 1.33657 * 125.42001 * 269.99725 * 3 2 1 30 30 H 1.09002 * 109.46992 * 299.99468 * 1 2 3 31 31 H 1.08995 * 109.47560 * 60.00154 * 1 2 3 32 32 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46493 * 239.99969 * 2 1 3 34 34 H 1.09000 * 109.46922 * 120.00153 * 2 1 3 35 35 H 1.08995 * 109.47573 * 270.19726 * 6 5 4 36 36 H 1.09008 * 109.46755 * 30.19575 * 6 5 4 37 37 H 1.08996 * 109.47276 * 150.19037 * 6 5 4 38 38 H 1.08994 * 108.72861 * 270.61027 * 11 10 8 39 39 H 1.09003 * 108.72174 * 28.78587 * 11 10 8 40 40 H 1.08996 * 108.16874 * 154.02838 * 12 11 10 41 41 H 1.09003 * 108.16920 * 270.82284 * 12 11 10 42 42 H 1.08998 * 111.33786 * 73.50785 * 15 13 12 43 43 H 1.08999 * 111.24535 * 308.97698 * 15 13 12 44 44 H 1.09005 * 110.30233 * 277.18650 * 16 15 13 45 45 H 1.08990 * 110.31030 * 155.11861 * 16 15 13 46 46 H 0.97002 * 120.00235 * 179.97438 * 21 20 18 47 47 H 1.08998 * 108.41791 * 89.61898 * 28 10 8 48 48 H 1.08996 * 108.27810 * 332.27735 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2843 2.1347 1.0644 5 6 2.7171 3.3418 0.6863 6 6 3.1235 4.4697 1.5995 7 6 2.7198 3.3667 -0.6769 8 6 3.1172 4.4914 -1.5314 9 8 3.6086 5.4881 -1.0357 10 7 2.9378 4.4204 -2.8652 11 6 2.2293 3.2690 -3.3741 12 6 1.4520 3.5569 -4.6353 13 6 2.0392 4.5771 -5.5462 14 1 1.2339 4.9380 -6.1860 15 6 3.1234 4.0211 -6.4971 16 6 3.7061 5.3476 -7.0570 17 7 3.6688 6.2943 -5.9270 18 6 4.4141 7.4381 -5.8197 19 1 4.4444 7.9771 -4.8843 20 6 5.1307 7.9047 -6.9132 21 7 4.9434 7.3681 -8.1003 22 14 6.3605 9.2943 -6.6998 23 1 7.7175 8.7272 -6.4944 24 1 6.3595 10.1474 -7.9154 25 1 5.9826 10.1131 -5.5201 26 6 2.6903 5.8025 -4.9248 27 1 1.9432 6.5710 -4.7261 28 6 3.4696 5.4983 -3.6570 29 8 2.2905 2.1512 -1.0892 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2537 5.0869 1.8241 36 1 3.5271 4.0599 2.5255 37 1 3.8838 5.0779 1.1095 38 1 2.9499 2.4776 -3.5803 39 1 1.5355 2.9191 -2.6097 40 1 1.3480 2.6249 -5.1908 41 1 0.4550 3.8933 -4.3507 42 1 2.6832 3.4172 -7.2906 43 1 3.8790 3.4585 -5.9487 44 1 3.0902 5.7143 -7.8783 45 1 4.7324 5.1984 -7.3920 46 1 5.4439 7.6944 -8.8645 47 1 4.4940 5.2493 -3.9339 48 1 3.4897 6.3973 -3.0411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042302888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:11 Heat of formation + Delta-G solvation = 20.007682 kcal Electronic energy + Delta-G solvation = -29957.793558 eV Core-core repulsion = 26015.351995 eV Total energy + Delta-G solvation = -3942.441563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.65128 -40.29271 -38.32377 -36.00351 -35.07417 -34.53375 -33.18750 -31.71234 -30.96305 -29.61143 -28.64673 -27.71182 -25.42410 -24.76128 -23.92050 -22.77264 -21.84082 -21.52861 -20.53385 -20.15791 -18.08512 -17.33455 -17.18399 -16.77893 -16.24284 -15.94313 -15.30219 -15.08193 -14.87495 -14.74071 -14.41348 -14.10523 -13.98727 -13.66162 -13.37449 -13.26265 -13.05605 -12.72882 -12.48831 -12.39481 -12.33694 -12.09268 -11.79528 -11.64931 -11.62578 -11.41077 -11.15613 -11.08530 -10.84767 -10.81930 -10.73334 -10.11362 -10.04499 -9.95348 -9.85399 -9.71272 -9.64386 -8.98094 -8.62271 -8.29393 -6.89415 -5.77529 -3.11553 0.71574 2.22811 2.23978 3.06628 3.17625 3.40437 3.46604 3.48204 3.64309 4.40442 4.46048 4.53509 4.68614 4.70233 4.80932 4.92238 4.93800 5.05730 5.24372 5.32732 5.33244 5.35960 5.40706 5.47672 5.56700 5.58581 5.62538 5.69743 5.75598 5.78337 5.80475 5.91150 5.94900 6.01688 6.16369 6.20446 6.21595 6.41317 6.50061 6.55257 6.78019 6.86220 6.97075 7.31563 7.44575 7.51637 7.56651 7.76771 8.12157 8.19979 9.15422 9.75861 10.42240 11.35203 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.003252 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.777708 B = 8607.968213 C = 9872.560469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C 0.208 3.792 4 N -0.487 5.487 5 C 0.076 3.924 6 C -0.082 4.082 7 C -0.109 4.109 8 C 0.590 3.410 9 O -0.515 6.515 10 N -0.576 5.576 11 C 0.112 3.888 12 C -0.107 4.107 13 C -0.094 4.094 14 H 0.066 0.934 15 C -0.141 4.141 16 C 0.175 3.825 17 N -0.595 5.595 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.163 3.837 27 H 0.046 0.954 28 C 0.101 3.899 29 O -0.180 6.180 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.033 0.967 45 H 0.059 0.941 46 H 0.253 0.747 47 H 0.071 0.929 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 -16.468 13.506 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C 0.003 3.997 4 N -0.217 5.217 5 C -0.048 4.048 6 C -0.139 4.139 7 C -0.164 4.164 8 C 0.376 3.624 9 O -0.393 6.393 10 N -0.306 5.306 11 C -0.011 4.011 12 C -0.145 4.145 13 C -0.113 4.113 14 H 0.084 0.916 15 C -0.180 4.180 16 C 0.050 3.950 17 N -0.320 5.320 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.055 3.945 27 H 0.064 0.936 28 C -0.022 4.022 29 O -0.067 6.067 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.249 -15.998 14.030 23.202 hybrid contribution 0.695 0.874 -0.767 1.354 sum -8.554 -15.124 13.264 21.860 Atomic orbital electron populations 1.21790 0.92765 1.03169 1.03161 1.20162 0.97074 0.83997 1.05513 1.26598 0.97143 0.96706 0.79263 1.70313 1.17659 1.03697 1.30064 1.22038 0.97465 0.93962 0.91302 1.20406 1.02893 0.93191 0.97414 1.23019 1.11978 0.86234 0.95145 1.16676 0.79647 0.84113 0.81917 1.90838 1.45296 1.29673 1.73493 1.46721 1.54861 1.23291 1.05747 1.20871 0.95953 0.87251 0.97008 1.20357 0.99039 1.00124 0.95005 1.20529 0.98764 0.95250 0.96791 0.91574 1.23058 0.97537 0.99535 0.97844 1.21421 0.99797 0.84360 0.89381 1.44964 1.44604 1.24210 1.18196 1.19049 1.20615 1.00023 0.96356 0.90420 1.24819 1.00961 0.99271 0.95015 1.69969 1.43376 1.44448 0.98507 0.86130 0.81408 0.81434 0.77018 1.21563 1.21781 1.20418 1.20491 0.91372 0.93637 0.89015 0.93591 1.21772 0.98361 0.88522 0.93574 1.84721 1.63375 1.22246 1.36371 0.91691 0.91927 0.90688 0.88501 0.87447 0.90175 0.90592 0.88327 0.92266 0.90000 0.90522 0.92151 0.91951 0.92403 0.94847 0.92267 0.93699 0.91059 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 37.16 0.37 -0.43 16 2 C -0.03 -0.18 6.56 -27.88 -0.18 -0.37 16 3 C 0.21 2.28 7.57 -12.80 -0.10 2.18 16 4 N -0.49 -6.34 11.26 -7.07 -0.08 -6.42 16 5 C 0.08 1.07 7.16 -82.46 -0.59 0.48 16 6 C -0.08 -0.99 9.95 36.01 0.36 -0.63 16 7 C -0.11 -1.60 6.59 -36.84 -0.24 -1.85 16 8 C 0.59 10.00 7.51 -12.83 -0.10 9.91 16 9 O -0.51 -9.88 13.94 5.20 0.07 -9.81 16 10 N -0.58 -9.54 3.14 -180.78 -0.57 -10.11 16 11 C 0.11 1.50 5.20 -6.18 -0.03 1.47 16 12 C -0.11 -1.37 5.46 -29.81 -0.16 -1.53 16 13 C -0.09 -1.56 2.34 -92.32 -0.22 -1.78 16 14 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 15 C -0.14 -2.50 6.59 -24.67 -0.16 -2.66 16 16 C 0.18 4.09 5.35 -2.28 -0.01 4.08 16 17 N -0.59 -14.68 2.91 -163.15 -0.47 -15.16 16 18 C -0.23 -6.37 9.86 -15.06 -0.15 -6.51 16 19 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 20 C 0.00 -0.10 5.40 -17.43 -0.09 -0.20 16 21 N -0.92 -26.59 10.73 55.49 0.60 -25.99 16 22 Si 0.91 22.18 29.56 -169.99 -5.03 17.15 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.16 3.29 3.56 -67.91 -0.24 3.05 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 C 0.10 1.98 5.45 -5.97 -0.03 1.95 16 29 O -0.18 -2.25 7.46 4.44 0.03 -2.21 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.10 1.32 6.35 -51.93 -0.33 0.99 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.00 5.15 -51.93 -0.27 0.73 16 40 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.03 0.85 7.90 -51.93 -0.41 0.44 16 45 H 0.06 1.55 7.23 -51.93 -0.38 1.17 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.07 1.55 7.87 -51.93 -0.41 1.15 16 48 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -31.97 376.13 -8.97 -40.94 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.61 Total: -1.23 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.59 Total: 7.16 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.53 Total: -57.67 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.03 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -8.97 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042302888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.948 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds