Wall clock time and date at job start Tue Mar 31 2020 17:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47046 * 2 1 4 4 N 1.30016 * 127.33991 * 270.14750 * 3 2 1 5 5 O 1.20652 * 112.30204 * 180.27313 * 4 3 2 6 6 C 1.33491 * 113.16196 * 359.73616 * 5 4 3 7 7 C 1.50699 * 126.83023 * 180.02562 * 6 5 4 8 8 C 1.37363 * 106.33988 * 359.97438 * 6 5 4 9 9 C 1.47397 * 128.56656 * 179.97438 * 8 6 5 10 10 O 1.21603 * 120.00271 * 90.02353 * 9 8 6 11 11 N 1.34773 * 119.99680 * 270.02455 * 9 8 6 12 12 C 1.47148 * 121.22540 * 359.97438 * 11 9 8 13 13 C 1.52837 * 107.98150 * 237.32183 * 12 11 9 14 14 C 1.51590 * 110.30240 * 302.73624 * 13 12 11 15 15 H 1.08998 * 112.33610 * 289.13477 * 14 13 12 16 16 C 1.56031 * 105.73300 * 164.81903 * 14 13 12 17 17 C 1.54512 * 102.70239 * 280.73566 * 16 14 13 18 18 N 1.47440 * 107.14026 * 337.50815 * 17 16 14 19 19 C 1.36931 * 126.05880 * 178.26875 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69296 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69181 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.46465 * 107.87938 * 358.00531 * 18 17 16 28 28 H 1.08998 * 108.42778 * 270.33809 * 27 18 17 29 29 C 1.46761 * 121.21910 * 179.97438 * 11 9 8 30 30 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46936 * 299.99791 * 1 2 3 32 32 H 1.08998 * 109.46891 * 59.99525 * 1 2 3 33 33 H 1.08995 * 109.46996 * 239.99774 * 2 1 3 34 34 H 1.09004 * 109.46512 * 119.99887 * 2 1 3 35 35 H 1.09006 * 109.46745 * 269.99216 * 7 6 5 36 36 H 1.08997 * 109.47363 * 29.99781 * 7 6 5 37 37 H 1.08998 * 109.46815 * 150.00035 * 7 6 5 38 38 H 1.09000 * 109.75881 * 356.94619 * 12 11 9 39 39 H 1.09003 * 109.76181 * 117.64477 * 12 11 9 40 40 H 1.09004 * 109.25294 * 62.93668 * 13 12 11 41 41 H 1.08997 * 109.25429 * 182.41006 * 13 12 11 42 42 H 1.09002 * 110.77771 * 39.22728 * 16 14 13 43 43 H 1.09002 * 110.77620 * 162.47009 * 16 14 13 44 44 H 1.09006 * 110.01985 * 218.07009 * 17 16 14 45 45 H 1.09005 * 109.79732 * 96.82501 * 17 16 14 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.22850 * 7.11613 * 29 11 9 48 48 H 1.09000 * 109.19450 * 247.73393 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6869 3.2617 -0.7207 6 6 2.7519 3.4388 0.6008 7 6 3.1989 4.6827 1.3246 8 6 2.3293 2.2621 1.1697 9 6 2.2095 1.9235 2.5993 10 8 1.1691 2.1401 3.1903 11 7 3.2532 1.3740 3.2513 12 6 4.5243 1.1000 2.5625 13 6 4.8296 -0.3902 2.7108 14 6 4.8828 -0.7729 4.1766 15 1 5.7640 -0.3721 4.6776 16 6 4.8025 -2.3308 4.2103 17 6 3.2936 -2.5976 4.0112 18 7 2.5784 -1.3756 4.4224 19 6 1.2243 -1.1786 4.3716 20 1 0.8020 -0.2418 4.7041 21 6 0.3942 -2.1828 3.8927 22 7 0.9089 -3.3243 3.4869 23 14 -1.4523 -1.9112 3.8161 24 1 -2.1086 -3.1239 3.2649 25 1 -1.9706 -1.6454 5.1822 26 1 -1.7457 -0.7482 2.9404 27 6 3.5724 -0.4121 4.9008 28 1 3.7159 -0.5673 5.9701 29 6 3.1636 1.0269 4.6745 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 4.2740 4.6356 1.4981 36 1 2.9666 5.5587 0.7191 37 1 2.6795 4.7534 2.2803 38 1 4.4335 1.3543 1.5065 39 1 5.3230 1.6875 3.0154 40 1 4.0494 -0.9680 2.2151 41 1 5.7900 -0.6085 2.2439 42 1 5.3851 -2.7657 3.3982 43 1 5.1383 -2.7145 5.1737 44 1 2.9784 -3.4379 4.6299 45 1 3.0917 -2.8103 2.9614 46 1 0.3289 -4.0260 3.1519 47 1 2.1372 1.1662 5.0140 48 1 3.8224 1.6815 5.2451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042351747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:15 Heat of formation + Delta-G solvation = 51.413096 kcal Electronic energy + Delta-G solvation = -31782.086211 eV Core-core repulsion = 27841.006490 eV Total energy + Delta-G solvation = -3941.079722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.73045 -39.98076 -38.08539 -35.08788 -34.95662 -33.54589 -32.89178 -31.25760 -31.04809 -29.33131 -28.41069 -27.89433 -25.23001 -24.56890 -23.97654 -22.82923 -22.56371 -20.19286 -19.99555 -19.46806 -18.44920 -17.69881 -17.25900 -16.56879 -16.23452 -15.54449 -14.94829 -14.80261 -14.35354 -14.28314 -13.99285 -13.84858 -13.61602 -13.41388 -13.32860 -12.99653 -12.88394 -12.66940 -12.55526 -12.29710 -12.01626 -11.65942 -11.46624 -11.33922 -11.28674 -11.21578 -10.91840 -10.81368 -10.69997 -10.51298 -10.13975 -9.92836 -9.89570 -9.77563 -9.69418 -9.55531 -9.51947 -9.15666 -8.53334 -8.20035 -6.77992 -5.65012 -2.96988 1.41710 2.10865 2.76847 3.02046 3.44232 3.47417 3.50628 3.56249 4.24327 4.39349 4.56836 4.80558 5.00665 5.05208 5.09264 5.21664 5.24699 5.32522 5.44567 5.47073 5.51936 5.59499 5.61507 5.63128 5.67143 5.69755 5.76125 5.83356 5.95292 6.01431 6.09080 6.10821 6.23248 6.26923 6.27975 6.39082 6.42795 6.51090 6.59817 6.60919 6.70546 6.90780 7.04011 7.61066 7.62791 7.77513 7.89641 8.28977 8.37379 8.54421 9.28397 9.89111 10.53540 11.46907 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.006367 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.692475 B = 4396.898691 C = 5587.334805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.068 3.932 4 N -0.362 5.362 5 O 0.091 5.909 6 C -0.003 4.003 7 C -0.073 4.073 8 C -0.229 4.229 9 C 0.605 3.395 10 O -0.521 6.521 11 N -0.582 5.582 12 C 0.113 3.887 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.075 0.925 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.587 5.587 19 C -0.213 4.213 20 H 0.080 0.920 21 C -0.004 4.004 22 N -0.924 5.924 23 Si 0.898 3.102 24 H -0.293 1.293 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.154 3.846 28 H 0.029 0.971 29 C 0.113 3.887 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.250 0.750 47 H 0.096 0.904 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 11.177 -3.994 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.094 4.094 4 N -0.068 5.068 5 O 0.030 5.970 6 C -0.067 4.067 7 C -0.131 4.131 8 C -0.236 4.236 9 C 0.390 3.610 10 O -0.396 6.396 11 N -0.315 5.315 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.182 4.182 17 C 0.055 3.945 18 N -0.313 5.313 19 C -0.342 4.342 20 H 0.097 0.903 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.729 3.271 24 H -0.219 1.219 25 H -0.214 1.214 26 H -0.208 1.208 27 C 0.046 3.954 28 H 0.047 0.953 29 C -0.010 4.010 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.867 10.996 -5.058 15.616 hybrid contribution -1.012 -0.208 0.643 1.217 sum 8.855 10.789 -4.416 14.639 Atomic orbital electron populations 1.21657 0.93538 1.02760 1.01952 1.20039 0.96990 0.86914 1.04581 1.24897 0.99460 0.98774 0.86228 1.73579 1.17228 0.92600 1.23404 1.84491 1.62948 1.27111 1.22497 1.24505 1.00458 0.97772 0.83941 1.20382 1.02487 0.90824 0.99372 1.22021 1.10714 0.95044 0.95821 1.16700 0.83168 0.77582 0.83547 1.90808 1.27686 1.53566 1.67564 1.47703 1.12467 1.60111 1.11180 1.21628 0.85392 0.97050 0.96978 1.21587 1.01834 0.95239 0.97329 1.22098 0.97636 0.96943 0.95440 0.90660 1.23188 1.00360 0.94503 1.00197 1.21214 0.84676 0.89157 0.99485 1.44254 1.01430 1.10861 1.74744 1.18955 0.80073 0.99517 1.35617 0.90250 1.24640 0.97466 0.96267 1.01551 1.69946 1.33067 1.05172 1.49044 0.86393 0.85914 0.76801 0.78008 1.21854 1.21372 1.20752 1.20703 0.89325 0.89251 0.96137 0.95340 1.21480 1.03768 0.96175 0.79531 0.91347 0.91741 0.93236 0.90163 0.88037 0.89086 0.89431 0.88942 0.91013 0.91668 0.90074 0.91979 0.92344 0.92812 0.94139 0.93651 0.93995 0.88543 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.90 37.16 0.37 -2.17 16 2 C -0.05 -0.83 6.55 -27.88 -0.18 -1.01 16 3 C 0.07 1.18 6.84 -79.76 -0.55 0.63 16 4 N -0.36 -5.92 12.01 34.78 0.42 -5.50 16 5 O 0.09 1.31 11.06 18.66 0.21 1.52 16 6 C 0.00 -0.05 7.55 -34.63 -0.26 -0.31 16 7 C -0.07 -0.65 10.33 36.01 0.37 -0.28 16 8 C -0.23 -3.82 4.24 -102.89 -0.44 -4.25 16 9 C 0.60 11.41 7.50 -12.53 -0.09 11.31 16 10 O -0.52 -11.86 16.56 5.28 0.09 -11.77 16 11 N -0.58 -9.81 2.97 -175.35 -0.52 -10.33 16 12 C 0.11 1.54 6.34 -3.77 -0.02 1.52 16 13 C -0.12 -1.81 4.96 -27.53 -0.14 -1.94 16 14 C -0.10 -1.58 3.60 -89.19 -0.32 -1.90 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.14 -2.48 6.30 -24.32 -0.15 -2.64 16 17 C 0.18 4.08 4.62 -2.73 -0.01 4.07 16 18 N -0.59 -13.81 3.20 -164.39 -0.53 -14.34 16 19 C -0.21 -5.73 9.70 -15.06 -0.15 -5.87 16 20 H 0.08 2.21 6.53 -52.49 -0.34 1.86 16 21 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 22 N -0.92 -26.37 10.38 55.49 0.58 -25.80 16 23 Si 0.90 22.81 29.55 -169.99 -5.02 17.79 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.15 2.91 3.01 -68.28 -0.21 2.70 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 C 0.11 1.99 5.69 -4.76 -0.03 1.97 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.07 0.97 6.39 -51.93 -0.33 0.64 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.50 6.82 -51.93 -0.35 1.15 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.04 1.05 7.58 -51.93 -0.39 0.65 16 45 H 0.05 1.15 7.02 -51.93 -0.36 0.79 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.10 2.01 5.54 -51.93 -0.29 1.72 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -31.73 379.75 -8.50 -40.23 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.54 Total: 0.84 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.90 Total: 1.63 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.05 Total: -55.96 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.29 Total: -10.25 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.73 -8.50 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042351747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.648 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds