Wall clock time and date at job start Tue Mar 31 2020 17:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47046 * 2 1 4 4 N 1.30016 * 127.33991 * 270.14750 * 3 2 1 5 5 O 1.20652 * 112.30204 * 180.27313 * 4 3 2 6 6 C 1.33491 * 113.16196 * 359.73616 * 5 4 3 7 7 C 1.50699 * 126.83023 * 180.02562 * 6 5 4 8 8 C 1.37363 * 106.33988 * 359.97438 * 6 5 4 9 9 C 1.47397 * 128.56656 * 179.97438 * 8 6 5 10 10 O 1.21603 * 120.00271 * 90.02353 * 9 8 6 11 11 N 1.34773 * 119.99680 * 270.02455 * 9 8 6 12 12 C 1.47148 * 121.22540 * 359.97438 * 11 9 8 13 13 C 1.52837 * 107.98150 * 237.32183 * 12 11 9 14 14 C 1.51590 * 110.30240 * 302.73624 * 13 12 11 15 15 H 1.08998 * 112.33610 * 289.13477 * 14 13 12 16 16 C 1.56031 * 105.73300 * 164.81903 * 14 13 12 17 17 C 1.54512 * 102.70239 * 280.73566 * 16 14 13 18 18 N 1.47440 * 107.14026 * 337.50815 * 17 16 14 19 19 C 1.36931 * 126.05880 * 178.26875 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69296 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69181 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.46465 * 107.87938 * 358.00531 * 18 17 16 28 28 H 1.08998 * 108.42778 * 270.33809 * 27 18 17 29 29 C 1.46761 * 121.21910 * 179.97438 * 11 9 8 30 30 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46936 * 299.99791 * 1 2 3 32 32 H 1.08998 * 109.46891 * 59.99525 * 1 2 3 33 33 H 1.08995 * 109.46996 * 239.99774 * 2 1 3 34 34 H 1.09004 * 109.46512 * 119.99887 * 2 1 3 35 35 H 1.09006 * 109.46745 * 269.99216 * 7 6 5 36 36 H 1.08997 * 109.47363 * 29.99781 * 7 6 5 37 37 H 1.08998 * 109.46815 * 150.00035 * 7 6 5 38 38 H 1.09000 * 109.75881 * 356.94619 * 12 11 9 39 39 H 1.09003 * 109.76181 * 117.64477 * 12 11 9 40 40 H 1.09004 * 109.25294 * 62.93668 * 13 12 11 41 41 H 1.08997 * 109.25429 * 182.41006 * 13 12 11 42 42 H 1.09002 * 110.77771 * 39.22728 * 16 14 13 43 43 H 1.09002 * 110.77620 * 162.47009 * 16 14 13 44 44 H 1.09006 * 110.01985 * 218.07009 * 17 16 14 45 45 H 1.09005 * 109.79732 * 96.82501 * 17 16 14 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.22850 * 7.11613 * 29 11 9 48 48 H 1.09000 * 109.19450 * 247.73393 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6869 3.2617 -0.7207 6 6 2.7519 3.4388 0.6008 7 6 3.1989 4.6827 1.3246 8 6 2.3293 2.2621 1.1697 9 6 2.2095 1.9235 2.5993 10 8 1.1691 2.1401 3.1903 11 7 3.2532 1.3740 3.2513 12 6 4.5243 1.1000 2.5625 13 6 4.8296 -0.3902 2.7108 14 6 4.8828 -0.7729 4.1766 15 1 5.7640 -0.3721 4.6776 16 6 4.8025 -2.3308 4.2103 17 6 3.2936 -2.5976 4.0112 18 7 2.5784 -1.3756 4.4224 19 6 1.2243 -1.1786 4.3716 20 1 0.8020 -0.2418 4.7041 21 6 0.3942 -2.1828 3.8927 22 7 0.9089 -3.3243 3.4869 23 14 -1.4523 -1.9112 3.8161 24 1 -2.1086 -3.1239 3.2649 25 1 -1.9706 -1.6454 5.1822 26 1 -1.7457 -0.7482 2.9404 27 6 3.5724 -0.4121 4.9008 28 1 3.7159 -0.5673 5.9701 29 6 3.1636 1.0269 4.6745 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 4.2740 4.6356 1.4981 36 1 2.9666 5.5587 0.7191 37 1 2.6795 4.7534 2.2803 38 1 4.4335 1.3543 1.5065 39 1 5.3230 1.6875 3.0154 40 1 4.0494 -0.9680 2.2151 41 1 5.7900 -0.6085 2.2439 42 1 5.3851 -2.7657 3.3982 43 1 5.1383 -2.7145 5.1737 44 1 2.9784 -3.4379 4.6299 45 1 3.0917 -2.8103 2.9614 46 1 0.3289 -4.0260 3.1519 47 1 2.1372 1.1662 5.0140 48 1 3.8224 1.6815 5.2451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042351747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:14 Heat of formation + Delta-G solvation = 32.018774 kcal Electronic energy + Delta-G solvation = -31782.927212 eV Core-core repulsion = 27841.006490 eV Total energy + Delta-G solvation = -3941.920723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.96867 -41.39428 -39.60403 -36.57272 -36.36978 -34.72713 -34.57542 -32.86688 -32.44513 -30.84237 -30.05276 -28.89360 -26.66671 -26.38288 -25.42391 -24.20256 -23.91292 -21.72920 -21.53152 -20.74133 -19.87169 -18.94912 -18.55165 -18.41643 -17.55909 -17.03216 -16.65106 -16.21170 -16.00428 -15.68691 -15.60306 -15.27781 -15.15915 -14.63358 -14.37886 -14.20589 -14.10742 -14.02574 -13.80646 -13.66883 -13.51453 -13.19630 -13.10194 -12.97870 -12.72639 -12.66856 -12.61303 -12.53810 -12.32090 -12.07883 -11.92547 -11.65005 -11.40408 -11.32140 -11.18173 -11.13856 -10.88443 -10.64004 -10.33171 -9.56164 -8.77037 -7.81025 -5.09831 0.30248 0.79314 1.34990 1.36955 1.38812 1.44564 1.85449 2.21140 2.48349 2.94425 3.24130 3.38057 3.49820 3.69868 3.85796 3.92422 3.95052 4.03402 4.12029 4.13897 4.19804 4.27930 4.35319 4.49212 4.49736 4.58997 4.62733 4.65159 4.68260 4.75504 4.76929 4.79324 4.86741 4.89407 4.98003 5.03017 5.05707 5.10640 5.14878 5.19551 5.32492 5.56240 5.63844 5.69164 5.75524 5.85470 6.25990 6.43628 7.14911 7.18010 7.18617 7.86617 8.49675 9.29156 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.006367 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.692475 B = 4396.898691 C = 5587.334805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C 0.052 3.948 4 N -0.367 5.367 5 O 0.104 5.896 6 C 0.030 3.970 7 C -0.074 4.074 8 C -0.263 4.263 9 C 0.602 3.398 10 O -0.576 6.576 11 N -0.579 5.579 12 C 0.113 3.887 13 C -0.120 4.120 14 C -0.082 4.082 15 H 0.126 0.874 16 C -0.131 4.131 17 C 0.187 3.813 18 N -0.603 5.603 19 C -0.199 4.199 20 H 0.064 0.936 21 C -0.053 4.053 22 N -0.944 5.944 23 Si 0.939 3.061 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.291 1.291 27 C 0.141 3.859 28 H 0.034 0.966 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.033 0.967 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.067 0.933 44 H -0.003 1.003 45 H 0.008 0.992 46 H 0.241 0.759 47 H 0.054 0.946 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 13.908 -4.376 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.110 4.110 4 N -0.073 5.073 5 O 0.041 5.959 6 C -0.033 4.033 7 C -0.131 4.131 8 C -0.270 4.270 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.310 5.310 12 C -0.009 4.009 13 C -0.158 4.158 14 C -0.101 4.101 15 H 0.144 0.856 16 C -0.169 4.169 17 C 0.062 3.938 18 N -0.328 5.328 19 C -0.329 4.329 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.595 5.595 23 Si 0.770 3.230 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.218 1.218 27 C 0.034 3.966 28 H 0.051 0.949 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.052 0.948 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.026 0.974 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.760 13.728 -5.435 20.183 hybrid contribution -2.155 -0.965 0.789 2.490 sum 11.605 12.763 -4.646 17.865 Atomic orbital electron populations 1.21579 0.94214 1.02246 1.01213 1.19822 0.96344 0.87876 1.03638 1.24748 1.00576 0.98612 0.87040 1.73556 1.17476 0.93091 1.23158 1.84479 1.62170 1.26164 1.23049 1.25238 0.97200 0.97821 0.83079 1.20707 1.04293 0.89337 0.98767 1.21847 1.13928 0.96693 0.94566 1.17009 0.82696 0.77096 0.84263 1.90771 1.29773 1.56097 1.68933 1.47842 1.13291 1.58824 1.11038 1.21904 0.84720 0.96793 0.97481 1.21563 1.02134 0.95436 0.96628 1.22144 0.97093 0.95102 0.95804 0.85615 1.23045 0.95606 0.96488 1.01736 1.20954 0.88816 0.87793 0.96214 1.44409 1.01181 1.12667 1.74513 1.18958 0.82211 0.98238 1.33451 0.91796 1.25117 0.99915 0.96658 1.02920 1.70113 1.33196 1.05523 1.50641 0.85739 0.83494 0.76139 0.77664 1.21662 1.21160 1.21771 1.21042 0.89963 0.88989 0.96584 0.94905 1.21411 1.02425 0.96225 0.80623 0.91778 0.95132 0.91059 0.88312 0.91625 0.85661 0.86566 0.89612 0.90750 0.86925 0.94843 0.88238 0.90299 0.91395 0.98442 0.97390 0.94900 0.92710 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.90 71.98 0.71 -4.41 16 2 C -0.04 -1.42 6.55 29.85 0.20 -1.23 16 3 C 0.05 1.78 6.84 45.16 0.31 2.09 16 4 N -0.37 -11.52 12.01 -44.78 -0.54 -12.05 16 5 O 0.10 2.72 11.06 77.01 0.85 3.57 16 6 C 0.03 0.73 7.55 25.48 0.19 0.92 16 7 C -0.07 -0.99 10.33 71.24 0.74 -0.25 16 8 C -0.26 -8.61 4.24 -18.74 -0.08 -8.69 16 9 C 0.60 22.95 7.50 86.66 0.65 23.60 16 10 O -0.58 -27.51 16.56 -4.04 -0.07 -27.58 16 11 N -0.58 -18.71 2.97 -826.95 -2.45 -21.16 16 12 C 0.11 2.64 6.34 86.20 0.55 3.19 16 13 C -0.12 -3.16 4.96 30.08 0.15 -3.01 16 14 C -0.08 -2.23 3.60 -9.87 -0.04 -2.27 16 15 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.13 -4.22 6.30 32.16 0.20 -4.02 16 17 C 0.19 8.84 4.62 86.71 0.40 9.24 16 18 N -0.60 -29.29 3.20 -673.99 -2.16 -31.44 16 19 C -0.20 -11.27 9.70 84.03 0.82 -10.45 16 20 H 0.06 3.79 6.53 -2.91 -0.02 3.77 16 21 C -0.05 -3.13 5.49 84.86 0.47 -2.66 16 22 N -0.94 -57.32 10.38 21.65 0.22 -57.10 16 23 Si 0.94 49.59 29.55 68.60 2.03 51.62 16 24 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 25 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 27 C 0.14 5.12 3.01 44.78 0.13 5.25 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 C 0.12 3.93 5.69 85.77 0.49 4.42 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.07 2.87 8.14 -2.38 -0.02 2.86 16 35 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.37 8.11 -2.39 -0.02 1.35 16 38 H 0.07 1.76 6.39 -2.39 -0.02 1.75 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.22 6.82 -2.38 -0.02 1.21 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 2.26 7.94 -2.39 -0.02 2.24 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.00 -0.15 7.58 -2.38 -0.02 -0.17 16 45 H 0.01 0.43 7.02 -2.38 -0.02 0.41 16 46 H 0.24 14.54 8.31 -92.70 -0.77 13.77 16 47 H 0.05 2.34 5.54 -2.38 -0.01 2.33 16 48 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -78.34 379.75 4.73 -73.61 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.96 Total: 8.82 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.88 Total: 11.71 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.92 Total: -121.75 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.78 Total: -24.00 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Total: -78.34 4.73 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042351747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.627 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds