Wall clock time and date at job start Tue Mar 31 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46668 * 2 1 4 4 N 1.30018 * 127.33220 * 90.03139 * 3 2 1 5 5 O 1.20652 * 112.30223 * 179.97438 * 4 3 2 6 6 C 1.33494 * 113.15611 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.82966 * 179.73434 * 6 5 4 8 8 C 1.37362 * 106.34222 * 0.02562 * 6 5 4 9 9 C 1.47391 * 128.56238 * 179.97438 * 8 6 5 10 10 O 1.21609 * 120.00220 * 90.02420 * 9 8 6 11 11 N 1.34774 * 120.00186 * 270.02035 * 9 8 6 12 12 C 1.47157 * 121.21857 * 359.72469 * 11 9 8 13 13 C 1.53336 * 107.71810 * 122.67972 * 12 11 9 14 14 C 1.53099 * 110.50120 * 57.56663 * 13 12 11 15 15 H 1.08997 * 112.49454 * 70.43782 * 14 13 12 16 16 C 1.56037 * 106.38165 * 195.31004 * 14 13 12 17 17 C 1.54507 * 102.60894 * 78.37151 * 16 14 13 18 18 N 1.47433 * 107.15003 * 22.85174 * 17 16 14 19 19 C 1.36930 * 126.06174 * 181.65115 * 18 17 16 20 20 H 1.08002 * 120.00156 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99947 * 359.96223 * 19 18 17 22 22 N 1.31619 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47205 * 59.99142 * 23 21 19 25 25 H 1.48500 * 109.47133 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46701 * 299.99767 * 23 21 19 27 27 C 1.46473 * 107.87661 * 1.61769 * 18 17 16 28 28 H 1.08992 * 107.86208 * 89.63976 * 27 18 17 29 29 C 1.46764 * 121.21978 * 180.02562 * 11 9 8 30 30 H 1.09004 * 109.47350 * 59.99696 * 1 2 3 31 31 H 1.08999 * 109.46737 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47021 * 299.99534 * 1 2 3 33 33 H 1.08999 * 109.47282 * 240.00883 * 2 1 3 34 34 H 1.08995 * 109.47530 * 120.00522 * 2 1 3 35 35 H 1.09001 * 109.46668 * 0.03337 * 7 6 5 36 36 H 1.09006 * 109.46734 * 120.02602 * 7 6 5 37 37 H 1.08996 * 109.47258 * 240.03227 * 7 6 5 38 38 H 1.09001 * 109.75872 * 242.33174 * 12 11 9 39 39 H 1.08998 * 109.75385 * 3.08701 * 12 11 9 40 40 H 1.08999 * 109.39063 * 297.24062 * 13 12 11 41 41 H 1.08994 * 109.15958 * 177.74576 * 13 12 11 42 42 H 1.09002 * 110.77693 * 196.64933 * 16 14 13 43 43 H 1.09001 * 110.77977 * 319.89902 * 16 14 13 44 44 H 1.08998 * 109.90133 * 142.23382 * 17 16 14 45 45 H 1.09006 * 109.89668 * 263.47082 * 17 16 14 46 46 H 0.97007 * 119.99895 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.22548 * 352.85900 * 29 11 9 48 48 H 1.09001 * 109.22686 * 112.21896 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2956 2.1641 1.0338 5 8 2.6842 3.2626 0.7209 6 6 2.7473 3.4405 -0.6006 7 6 3.1830 4.6885 -1.3244 8 6 2.3299 2.2619 -1.1695 9 6 2.2097 1.9238 -2.5991 10 8 3.1527 1.4324 -3.1891 11 7 1.0546 2.1590 -3.2524 12 6 -0.1052 2.7469 -2.5635 13 6 -0.4908 4.0294 -3.3103 14 6 -0.7957 3.7236 -4.7791 15 1 -1.7249 3.1679 -4.9052 16 6 -0.7838 5.0937 -5.5256 17 6 0.7265 5.3736 -5.6927 18 7 1.4205 4.0751 -5.6151 19 6 2.7739 3.8791 -5.6843 20 1 3.1792 2.8803 -5.6158 21 6 3.6252 4.9641 -5.8426 22 7 3.1313 6.1812 -5.9268 23 14 5.4715 4.6967 -5.9377 24 1 5.7860 3.8219 -7.0957 25 1 6.1531 6.0052 -6.1068 26 1 5.9430 4.0504 -4.6867 27 6 0.4055 3.0320 -5.4501 28 1 0.1019 2.7010 -6.4431 29 6 0.9054 1.8322 -4.6754 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.4503 5.4554 -0.5975 36 1 4.0473 4.4631 -1.9492 37 1 2.3666 5.0495 -1.9499 38 1 -0.9381 2.0438 -2.5786 39 1 0.1594 2.9836 -1.5330 40 1 0.3323 4.7418 -3.2548 41 1 -1.3742 4.4638 -2.8426 42 1 -1.2712 5.0092 -6.4969 43 1 -1.2590 5.8671 -4.9221 44 1 0.9131 5.8368 -6.6616 45 1 1.0733 6.0281 -4.8929 46 1 3.7261 6.9394 -6.0378 47 1 1.8709 1.5230 -5.0759 48 1 0.1940 1.0134 -4.7830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042351749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:21 Heat of formation + Delta-G solvation = 50.443403 kcal Electronic energy + Delta-G solvation = -31624.937727 eV Core-core repulsion = 27683.815956 eV Total energy + Delta-G solvation = -3941.121771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.73227 -39.93664 -38.04877 -35.32055 -34.96101 -33.40358 -32.85808 -31.36413 -31.15951 -29.32584 -28.41721 -27.70128 -25.24520 -24.65170 -24.17181 -22.88896 -22.57511 -20.27685 -20.00925 -19.53616 -18.36797 -17.67190 -17.32783 -16.57256 -16.19307 -15.58055 -14.94361 -14.80977 -14.55188 -14.29777 -14.11926 -13.96247 -13.60188 -13.41500 -13.03474 -13.02593 -12.82056 -12.71706 -12.54885 -12.39227 -12.01071 -11.74255 -11.66819 -11.48732 -11.44221 -11.29854 -10.97687 -10.83153 -10.81972 -10.70327 -10.16010 -9.95876 -9.90076 -9.86075 -9.71724 -9.56544 -9.52934 -9.06810 -8.55711 -8.19310 -6.79614 -5.67054 -2.99007 1.48969 2.01486 2.84984 2.98171 3.45909 3.47643 3.49368 3.54713 4.08425 4.36993 4.54923 4.78397 5.03436 5.04562 5.07329 5.08908 5.16734 5.21943 5.31576 5.45399 5.50066 5.51288 5.63700 5.67905 5.69378 5.70284 5.73810 5.77435 5.88157 5.92065 5.96088 6.00052 6.07268 6.10066 6.21641 6.24073 6.27011 6.40594 6.45344 6.59108 6.69774 6.88954 7.03651 7.59321 7.61216 7.78688 7.87990 8.27022 8.32566 8.56255 9.26651 9.87076 10.51810 11.44827 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.005711 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.690841 B = 4901.425262 C = 5946.856798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.053 3.947 4 N -0.361 5.361 5 O 0.089 5.911 6 C 0.024 3.976 7 C -0.078 4.078 8 C -0.241 4.241 9 C 0.607 3.393 10 O -0.522 6.522 11 N -0.582 5.582 12 C 0.113 3.887 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.075 0.925 16 C -0.143 4.143 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.213 4.213 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.925 5.925 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.284 1.284 27 C 0.153 3.847 28 H 0.029 0.971 29 C 0.114 3.886 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.250 0.750 47 H 0.096 0.904 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -6.303 9.942 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.110 4.110 4 N -0.068 5.068 5 O 0.028 5.972 6 C -0.039 4.039 7 C -0.135 4.135 8 C -0.249 4.249 9 C 0.392 3.608 10 O -0.398 6.398 11 N -0.314 5.314 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.182 4.182 17 C 0.055 3.945 18 N -0.314 5.314 19 C -0.341 4.341 20 H 0.098 0.902 21 C -0.201 4.201 22 N -0.573 5.573 23 Si 0.731 3.269 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.210 1.210 27 C 0.045 3.955 28 H 0.046 0.954 29 C -0.009 4.009 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.145 -6.577 10.893 15.670 hybrid contribution 1.001 -0.005 -0.855 1.317 sum -8.144 -6.583 10.038 14.506 Atomic orbital electron populations 1.21745 0.93671 1.02415 1.02564 1.19956 0.96575 0.87794 1.04043 1.24682 1.00894 0.98597 0.86799 1.73548 1.16995 0.92750 1.23508 1.84504 1.63108 1.26572 1.22978 1.24779 0.98134 0.97826 0.83112 1.20524 1.04227 0.89930 0.98859 1.21919 1.12417 0.94995 0.95521 1.16678 0.82344 0.78259 0.83515 1.90807 1.37505 1.43906 1.67590 1.47685 1.11776 1.61411 1.10532 1.21740 0.88002 0.95250 0.96028 1.21929 1.01708 0.97204 0.95126 1.22366 0.97647 0.97429 0.94620 0.90625 1.23161 1.00390 0.95818 0.98813 1.21207 0.84883 0.87822 1.00611 1.44280 1.01241 1.00717 1.85129 1.18981 0.79925 0.93331 1.41869 0.90194 1.24656 0.97479 0.95353 1.02632 1.69947 1.32849 0.97378 1.57133 0.86356 0.85846 0.76372 0.78292 1.21301 1.21837 1.21027 1.20728 0.89636 0.89915 0.95246 0.95423 1.21465 1.03046 0.96893 0.79476 0.92051 0.91540 0.92341 0.89432 0.89782 0.89795 0.88162 0.87922 0.91711 0.90916 0.90094 0.92073 0.92749 0.92319 0.94101 0.93699 0.93980 0.88531 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.03 16 2 C -0.05 -0.53 6.55 -27.88 -0.18 -0.71 16 3 C 0.05 0.78 6.84 -79.77 -0.55 0.23 16 4 N -0.36 -5.56 12.01 34.78 0.42 -5.14 16 5 O 0.09 1.36 11.06 18.65 0.21 1.57 16 6 C 0.02 0.38 7.52 -34.62 -0.26 0.12 16 7 C -0.08 -1.17 10.33 36.01 0.37 -0.80 16 8 C -0.24 -4.03 4.25 -102.90 -0.44 -4.46 16 9 C 0.61 11.49 7.53 -12.54 -0.09 11.39 16 10 O -0.52 -12.00 16.56 5.27 0.09 -11.91 16 11 N -0.58 -9.77 2.96 -175.04 -0.52 -10.29 16 12 C 0.11 1.53 5.97 -3.51 -0.02 1.51 16 13 C -0.12 -1.75 5.06 -26.51 -0.13 -1.89 16 14 C -0.10 -1.54 3.68 -88.42 -0.33 -1.87 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.14 -2.43 6.32 -24.31 -0.15 -2.58 16 17 C 0.18 4.00 4.61 -2.74 -0.01 3.99 16 18 N -0.59 -13.63 3.20 -164.39 -0.53 -14.16 16 19 C -0.21 -5.63 9.70 -15.06 -0.15 -5.78 16 20 H 0.08 2.20 6.51 -52.49 -0.34 1.86 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -25.97 10.38 55.49 0.58 -25.39 16 23 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.15 2.86 2.97 -68.28 -0.20 2.66 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 C 0.11 2.01 5.68 -4.75 -0.03 1.98 16 30 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.06 0.73 7.98 -51.93 -0.41 0.32 16 39 H 0.07 0.97 6.37 -51.93 -0.33 0.64 16 40 H 0.08 1.43 6.85 -51.93 -0.36 1.08 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.90 7.98 -51.93 -0.41 0.48 16 44 H 0.04 1.04 7.57 -51.93 -0.39 0.65 16 45 H 0.04 1.11 7.04 -51.93 -0.37 0.74 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.10 2.01 5.54 -51.93 -0.29 1.72 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -31.04 378.84 -8.47 -39.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.50 Total: 0.11 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.90 Total: 2.53 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.05 Total: -54.98 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.29 Total: -10.35 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.04 -8.47 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042351749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.960 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds