Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47234 * 2 1 4 4 C 1.38357 * 120.27057 * 269.98062 * 3 2 1 5 5 N 1.31878 * 121.18107 * 180.02562 * 4 3 2 6 6 C 1.32242 * 121.80387 * 359.65447 * 5 4 3 7 7 O 1.35419 * 119.80285 * 180.31428 * 6 5 4 8 8 C 1.40277 * 120.39578 * 0.63141 * 6 5 4 9 9 C 1.47528 * 120.59535 * 179.67849 * 8 6 5 10 10 O 1.21583 * 119.99529 * 29.29802 * 9 8 6 11 11 N 1.34772 * 119.99737 * 209.29397 * 9 8 6 12 12 C 1.46924 * 120.63581 * 5.40072 * 11 9 8 13 13 C 1.53196 * 108.76583 * 126.35886 * 12 11 9 14 14 C 1.53042 * 109.30743 * 54.65896 * 13 12 11 15 15 H 1.09002 * 109.45994 * 58.63172 * 14 13 12 16 16 N 1.46504 * 109.45775 * 178.60061 * 14 13 12 17 17 C 1.36932 * 119.99921 * 275.02746 * 16 14 13 18 18 H 1.07994 * 120.00262 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99965 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47138 * 240.00018 * 21 19 17 24 24 H 1.48497 * 109.47067 * 120.00151 * 21 19 17 25 25 C 1.53045 * 109.52921 * 298.61335 * 14 13 12 26 26 C 1.46927 * 120.62627 * 185.38094 * 11 9 8 27 27 H 1.09006 * 109.58448 * 113.84341 * 26 11 9 28 28 C 1.53001 * 109.70578 * 353.48895 * 26 11 9 29 29 C 1.38332 * 120.27034 * 90.00231 * 3 2 1 30 30 H 1.09004 * 109.46697 * 299.99163 * 1 2 3 31 31 H 1.08994 * 109.47664 * 59.99627 * 1 2 3 32 32 H 1.09005 * 109.47094 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46732 * 240.00327 * 2 1 3 34 34 H 1.09001 * 109.47653 * 120.00799 * 2 1 3 35 35 H 1.08001 * 119.40913 * 0.02562 * 4 3 2 36 36 H 0.96696 * 114.00343 * 270.31789 * 7 6 5 37 37 H 1.08995 * 109.59095 * 246.15654 * 12 11 9 38 38 H 1.09004 * 109.58289 * 6.44655 * 12 11 9 39 39 H 1.09001 * 109.50952 * 294.70846 * 13 12 11 40 40 H 1.08995 * 109.49189 * 174.59999 * 13 12 11 41 41 H 0.97000 * 119.99676 * 95.03389 * 16 14 13 42 42 H 0.96994 * 119.99915 * 359.97438 * 20 19 17 43 43 H 1.08996 * 109.49419 * 181.32457 * 25 14 13 44 44 H 1.08995 * 109.49523 * 301.41862 * 25 14 13 45 45 H 1.09003 * 109.46684 * 304.08905 * 28 26 11 46 46 H 1.08996 * 109.47121 * 64.09119 * 28 26 11 47 47 H 1.08996 * 109.46936 * 184.08959 * 28 26 11 48 48 H 1.08010 * 120.82431 * 359.95642 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2652 2.0782 -1.1949 5 7 2.7053 3.3213 -1.2159 6 6 2.9373 3.9973 -0.1033 7 8 3.3828 5.2743 -0.1721 8 6 2.7309 3.3974 1.1479 9 6 2.9951 4.1451 2.3919 10 8 2.8716 5.3545 2.4120 11 7 3.3732 3.4876 3.5059 12 6 3.6410 2.0435 3.4684 13 6 5.0384 1.7863 4.0412 14 6 5.1353 2.4072 5.4367 15 1 4.3697 1.9745 6.0807 16 7 6.4594 2.1344 6.0013 17 6 6.6957 0.9536 6.6530 18 1 5.9062 0.2231 6.7504 19 6 7.9501 0.6953 7.1884 20 7 8.9122 1.5857 7.0702 21 14 8.2728 -0.9160 8.0769 22 1 7.0372 -1.7396 8.0726 23 1 8.6770 -0.6362 9.4782 24 1 9.3609 -1.6531 7.3856 25 6 4.9244 3.9199 5.3393 26 6 3.5259 4.2015 4.7809 27 1 2.7731 3.8522 5.4877 28 6 3.3575 5.7052 4.5537 29 6 2.2648 2.0782 1.1947 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0834 1.5642 -2.1272 36 1 4.3462 5.3541 -0.1941 37 1 2.8977 1.5182 4.0680 38 1 3.5955 1.6901 2.4382 39 1 5.7874 2.2367 3.3899 40 1 5.2120 0.7124 4.1081 41 1 7.1685 2.7904 5.9135 42 1 8.7448 2.4222 6.6085 43 1 5.0168 4.3646 6.3301 44 1 5.6745 4.3499 4.6756 45 1 4.0676 6.0400 3.7975 46 1 2.3421 5.9099 4.2147 47 1 3.5431 6.2366 5.4870 48 1 2.0902 1.5862 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044806065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = -3.660008 kcal Electronic energy + Delta-G solvation = -29687.158615 eV Core-core repulsion = 25743.690744 eV Total energy + Delta-G solvation = -3943.467871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41862 -39.89183 -37.84236 -37.20509 -34.87413 -34.58204 -33.84426 -32.12897 -31.46394 -29.52310 -29.04877 -27.13865 -25.15462 -24.58031 -23.94400 -23.10416 -22.79448 -21.34449 -20.34333 -19.48083 -18.75733 -17.52650 -17.34994 -16.96710 -16.37680 -15.81465 -15.37110 -15.17035 -14.78977 -14.45753 -14.36717 -14.28194 -13.83738 -13.70814 -13.66963 -13.39915 -13.31135 -13.17685 -12.74653 -12.44265 -12.20437 -12.10822 -12.02451 -11.69212 -11.65883 -11.51866 -11.41753 -10.92299 -10.88732 -10.61117 -10.52873 -10.20594 -10.09075 -9.96990 -9.85688 -9.27170 -9.12000 -8.98966 -8.94978 -8.50552 -7.10780 -6.16125 -3.16897 0.35935 0.74871 2.65335 2.84480 3.23658 3.46817 3.50325 3.53477 3.62395 4.13566 4.27105 4.39818 4.46691 4.59877 4.63767 4.87973 4.92460 4.94375 5.02609 5.05840 5.18233 5.20877 5.28066 5.35102 5.41061 5.43589 5.48206 5.55480 5.56979 5.68267 5.78025 5.79904 5.84522 5.91314 6.00291 6.07528 6.09115 6.22372 6.32046 6.33361 6.40553 6.64110 6.76266 6.89676 7.24693 7.39032 7.55494 7.74555 8.14758 8.69530 9.15899 10.02394 10.17446 11.32204 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.003283 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.866402 B = 8526.775158 C = 9837.091559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.155 4.155 4 C 0.146 3.854 5 N -0.505 5.505 6 C 0.359 3.641 7 O -0.461 6.461 8 C -0.195 4.195 9 C 0.560 3.440 10 O -0.513 6.513 11 N -0.597 5.597 12 C 0.087 3.913 13 C -0.149 4.149 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.735 5.735 17 C -0.333 4.333 18 H 0.065 0.935 19 C -0.044 4.044 20 N -0.944 5.944 21 Si 1.084 2.916 22 H -0.295 1.295 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.136 4.136 26 C 0.149 3.851 27 H 0.072 0.928 28 C -0.135 4.135 29 C -0.038 4.038 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.402 0.598 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.367 0.633 42 H 0.256 0.744 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.044 0.956 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.515 -1.035 -14.696 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.157 4.157 4 C -0.012 4.012 5 N -0.223 5.223 6 C 0.179 3.821 7 O -0.268 6.268 8 C -0.201 4.201 9 C 0.347 3.653 10 O -0.389 6.389 11 N -0.330 5.330 12 C -0.036 4.036 13 C -0.191 4.191 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.377 5.377 17 C -0.464 4.464 18 H 0.083 0.917 19 C -0.242 4.242 20 N -0.589 5.589 21 Si 0.915 3.085 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.175 4.175 26 C 0.046 3.954 27 H 0.090 0.910 28 C -0.192 4.192 29 C -0.063 4.063 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.180 0.820 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.987 -0.815 -14.551 21.633 hybrid contribution -0.495 0.449 -0.121 0.679 sum -16.482 -0.367 -14.672 22.069 Atomic orbital electron populations 1.21781 0.94351 1.02159 1.02357 1.20481 0.96349 0.91062 1.03826 1.20895 1.02397 0.98758 0.93623 1.22626 0.91942 0.88733 0.97869 1.67314 1.14825 1.08785 1.31365 1.19125 0.92410 0.84227 0.86296 1.84770 1.27641 1.19056 1.95371 1.21209 1.08279 0.95525 0.95119 1.17878 0.77920 0.87010 0.82485 1.90885 1.51629 1.12855 1.83577 1.48085 1.66671 1.09434 1.08825 1.22536 0.98840 0.80053 1.02168 1.22664 0.93910 1.02618 0.99873 1.20104 0.89385 0.91464 0.91654 0.93312 1.42449 1.07990 1.20289 1.66957 1.20081 0.98781 0.95475 1.32059 0.91669 1.25769 0.91930 1.05326 1.01165 1.70815 1.33763 1.08950 1.45344 0.83165 0.74871 0.74186 0.76230 1.22115 1.21980 1.22020 1.22319 0.95514 0.98354 1.01325 1.21329 0.97403 0.93246 0.83392 0.90969 1.22205 1.03905 0.92691 1.00382 1.22072 0.92701 0.92058 0.99508 0.92470 0.92464 0.91903 0.90247 0.90278 0.81987 0.73947 0.91116 0.89073 0.92369 0.90501 0.80023 0.93271 0.90605 0.91878 0.91014 0.91333 0.93734 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.45 6.08 -27.88 -0.17 -0.62 16 3 C -0.15 -1.28 5.14 -104.54 -0.54 -1.82 16 4 C 0.15 1.33 10.84 -17.49 -0.19 1.14 16 5 N -0.50 -6.13 10.37 -12.98 -0.13 -6.27 16 6 C 0.36 4.69 7.74 -16.61 -0.13 4.56 16 7 O -0.46 -6.06 12.06 -37.12 -0.45 -6.51 16 8 C -0.19 -2.44 5.49 -104.69 -0.58 -3.01 16 9 C 0.56 8.03 7.29 -12.48 -0.09 7.94 16 10 O -0.51 -8.55 11.16 -13.88 -0.15 -8.70 16 11 N -0.60 -8.06 2.97 -166.44 -0.49 -8.55 16 12 C 0.09 1.06 4.75 -3.71 -0.02 1.04 16 13 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 14 C 0.18 3.43 2.73 -67.88 -0.19 3.24 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.74 -17.64 5.12 -53.38 -0.27 -17.91 16 17 C -0.33 -8.98 9.93 -15.06 -0.15 -9.13 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 20 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 21 Si 1.08 25.34 29.92 -169.99 -5.09 20.25 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.14 -2.20 4.84 -26.61 -0.13 -2.33 16 26 C 0.15 2.10 3.48 -67.60 -0.24 1.86 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.13 -1.90 7.60 37.16 0.28 -1.62 16 29 C -0.04 -0.37 7.20 -38.89 -0.28 -0.65 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.35 8.09 -51.92 -0.42 -0.07 16 34 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.40 3.59 9.06 45.56 0.41 4.00 16 37 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 38 H 0.09 0.97 4.04 -51.93 -0.21 0.76 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.37 9.24 6.63 -40.82 -0.27 8.97 16 42 H 0.26 7.68 6.77 -40.82 -0.28 7.40 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16 46 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.16 1.30 5.48 -52.48 -0.29 1.01 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -34.10 377.75 -8.87 -42.97 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.44 Total: 10.69 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.28 Total: -3.74 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.14 Total: -60.65 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.60 Total: -15.21 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.10 -8.87 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044806065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.311 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds