Wall clock time and date at job start Tue Mar 31 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46738 * 2 1 4 4 N 1.29934 * 125.38013 * 85.60398 * 3 2 1 5 5 C 1.36057 * 108.47865 * 180.11844 * 4 3 2 6 6 C 1.47426 * 126.44947 * 179.86209 * 5 4 3 7 7 O 1.21608 * 119.99723 * 184.45627 * 6 5 4 8 8 N 1.34770 * 120.00079 * 4.45975 * 6 5 4 9 9 C 1.46499 * 120.00142 * 185.23127 * 8 6 5 10 10 H 1.08998 * 109.31951 * 49.58763 * 9 8 6 11 11 C 1.53031 * 109.32901 * 290.11720 * 9 8 6 12 12 C 1.53971 * 108.82785 * 295.14069 * 11 9 8 13 13 H 1.08993 * 113.67019 * 168.55713 * 12 11 9 14 14 C 1.55430 * 106.41490 * 293.82602 * 12 11 9 15 15 C 1.55165 * 100.35461 * 73.37345 * 14 12 11 16 16 H 1.09001 * 113.04547 * 162.98758 * 15 14 12 17 17 C 1.52989 * 109.32445 * 169.22201 * 9 8 6 18 18 N 1.47788 * 104.25510 * 40.55143 * 15 14 12 19 19 C 1.36939 * 125.85490 * 153.51133 * 18 15 14 20 20 H 1.08002 * 119.99828 * 148.80408 * 19 18 15 21 21 C 1.38805 * 120.00156 * 328.80728 * 19 18 15 22 22 N 1.31628 * 120.00107 * 159.59355 * 21 19 18 23 23 Si 1.86793 * 120.00181 * 339.59534 * 21 19 18 24 24 H 1.48502 * 109.47576 * 95.38641 * 23 21 19 25 25 H 1.48503 * 109.47507 * 215.38893 * 23 21 19 26 26 H 1.48499 * 109.47033 * 335.38771 * 23 21 19 27 27 C 1.47076 * 108.28791 * 333.53742 * 18 15 14 28 28 C 1.36095 * 107.10323 * 359.59572 * 5 4 3 29 29 C 1.50703 * 126.52554 * 180.20350 * 28 5 4 30 30 O 1.34043 * 125.37724 * 265.26984 * 3 2 1 31 31 H 1.09001 * 109.47650 * 304.69605 * 1 2 3 32 32 H 1.08998 * 109.46893 * 64.70273 * 1 2 3 33 33 H 1.09002 * 109.46955 * 184.69601 * 1 2 3 34 34 H 1.09002 * 109.47369 * 240.00051 * 2 1 3 35 35 H 1.08999 * 109.46928 * 119.99460 * 2 1 3 36 36 H 0.97008 * 119.99867 * 5.23510 * 8 6 5 37 37 H 1.08994 * 109.57159 * 54.94156 * 11 9 8 38 38 H 1.09000 * 109.57815 * 175.33778 * 11 9 8 39 39 H 1.09000 * 111.23043 * 315.59702 * 14 12 11 40 40 H 1.08995 * 111.23310 * 191.15522 * 14 12 11 41 41 H 1.08997 * 109.53509 * 185.06455 * 17 9 8 42 42 H 1.08990 * 109.53761 * 305.22261 * 17 9 8 43 43 H 0.97000 * 119.99871 * 185.02211 * 22 21 19 44 44 H 1.08997 * 109.98127 * 120.46059 * 27 18 15 45 45 H 1.09008 * 109.97725 * 241.74129 * 27 18 15 46 46 H 1.08995 * 109.46814 * 90.00535 * 29 28 5 47 47 H 1.09000 * 109.47030 * 210.00207 * 29 28 5 48 48 H 1.08997 * 109.46902 * 330.00707 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2064 2.1573 1.0563 5 6 2.6664 3.3754 0.6617 6 6 2.9934 4.5144 1.5388 7 8 3.3205 5.5807 1.0542 8 7 2.9299 4.3738 2.8776 9 6 3.1426 5.5337 3.7469 10 1 2.5198 6.3600 3.4043 11 6 4.6132 5.9520 3.6826 12 6 5.4775 4.8220 4.2715 13 1 6.5446 4.9464 4.0881 14 6 5.1216 4.7387 5.7822 15 6 3.7164 4.0856 5.7021 16 1 3.3883 3.6613 6.6510 17 6 2.7555 5.1690 5.1814 18 7 3.8499 3.0636 4.6429 19 6 3.1072 1.9181 4.5353 20 1 2.8913 1.5040 3.5615 21 6 2.6318 1.2893 5.6778 22 7 1.6162 0.4559 5.5962 23 14 3.4332 1.6258 7.3312 24 1 2.6770 2.6888 8.0408 25 1 3.4257 0.3847 8.1468 26 1 4.8340 2.0713 7.1208 27 6 4.9177 3.4874 3.7246 28 6 2.7734 3.3427 -0.6947 29 6 3.2470 4.4631 -1.5843 30 8 2.3759 2.1226 -1.0892 31 1 -0.3634 0.5850 0.8449 32 1 -0.3633 0.4391 -0.9291 33 1 -0.3633 -1.0242 0.0841 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 2.7434 3.5045 3.2658 37 1 4.8980 6.1268 2.6451 38 1 4.7593 6.8635 4.2621 39 1 5.0709 5.7306 6.2311 40 1 5.8237 4.1004 6.3185 41 1 2.8266 6.0537 5.8142 42 1 1.7338 4.7901 5.1981 43 1 1.2372 0.0728 6.4027 44 1 5.7065 2.7356 3.6984 45 1 4.5113 3.6361 2.7241 46 1 4.3268 4.3920 -1.7144 47 1 2.7583 4.3871 -2.5556 48 1 2.9985 5.4205 -1.1263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047158010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:05 Heat of formation + Delta-G solvation = 59.368897 kcal Electronic energy + Delta-G solvation = -31486.400172 eV Core-core repulsion = 27545.665440 eV Total energy + Delta-G solvation = -3940.734732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.11367 -40.88805 -38.08874 -34.75256 -33.89764 -33.67016 -33.09115 -31.40440 -31.20241 -30.70078 -28.41973 -26.75285 -25.45811 -24.31543 -22.91904 -22.79567 -21.67629 -20.75329 -20.04872 -19.62508 -19.16282 -17.51519 -16.69925 -16.59184 -16.09489 -15.42915 -15.22964 -14.71680 -14.40571 -14.29310 -14.12081 -13.47454 -13.29337 -13.25482 -13.02743 -12.94981 -12.75831 -12.50673 -12.43634 -12.26131 -12.17112 -12.06297 -11.77742 -11.60831 -11.32338 -11.20257 -11.07628 -10.95946 -10.81553 -10.76593 -10.28926 -10.24279 -10.09900 -9.77316 -9.57499 -9.45952 -9.25014 -8.58285 -8.48380 -7.76074 -6.90434 -5.98148 -3.41433 1.41524 2.45352 2.74437 3.26077 3.43467 3.47515 3.78599 3.82942 4.25224 4.47173 4.84893 4.88045 5.07583 5.12933 5.17297 5.26850 5.30707 5.34002 5.38404 5.43860 5.47088 5.56807 5.68896 5.71395 5.75218 5.75608 5.88070 5.90098 6.02716 6.05856 6.12769 6.14302 6.18400 6.21703 6.28607 6.34930 6.43455 6.45673 6.51985 6.63303 6.67809 6.82965 6.87478 6.94194 7.25867 7.81850 7.89070 8.33130 8.49112 8.85710 8.99088 9.62877 10.15497 11.14461 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.005999 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.076175 B = 4665.972617 C = 6591.476955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 C 0.188 3.812 4 N -0.427 5.427 5 C -0.064 4.064 6 C 0.583 3.417 7 O -0.565 6.565 8 N -0.678 5.678 9 C 0.161 3.839 10 H 0.066 0.934 11 C -0.124 4.124 12 C -0.102 4.102 13 H 0.082 0.918 14 C -0.132 4.132 15 C 0.139 3.861 16 H 0.070 0.930 17 C -0.140 4.140 18 N -0.597 5.597 19 C -0.266 4.266 20 H 0.108 0.892 21 C 0.037 3.963 22 N -0.896 5.896 23 Si 0.878 3.122 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.269 1.269 27 C 0.104 3.896 28 C 0.017 3.983 29 C -0.070 4.070 30 O -0.204 6.204 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.444 0.556 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.263 0.737 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 5.668 -9.857 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.021 4.021 4 N -0.156 5.156 5 C -0.184 4.184 6 C 0.368 3.632 7 O -0.447 6.447 8 N -0.344 5.344 9 C 0.056 3.944 10 H 0.084 0.916 11 C -0.162 4.162 12 C -0.121 4.121 13 H 0.100 0.900 14 C -0.170 4.170 15 C 0.033 3.967 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.324 5.324 19 C -0.393 4.393 20 H 0.126 0.874 21 C -0.164 4.164 22 N -0.538 5.538 23 Si 0.710 3.290 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.194 1.194 27 C -0.021 4.021 28 C -0.039 4.039 29 C -0.126 4.126 30 O -0.092 6.092 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.302 0.698 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.856 5.847 -9.449 11.266 hybrid contribution 0.481 -0.191 0.728 0.893 sum 2.337 5.656 -8.721 10.655 Atomic orbital electron populations 1.21767 0.93148 1.03025 1.02699 1.20077 0.96877 0.84035 1.05190 1.26315 1.00265 0.97299 0.78263 1.71000 1.14263 1.01394 1.28923 1.21680 1.09672 0.94915 0.92152 1.16860 0.78251 0.85139 0.82922 1.90659 1.50812 1.27215 1.75986 1.47711 1.66331 1.16227 1.04172 1.20684 0.95664 0.87955 0.90110 0.91561 1.22099 0.95021 0.97294 1.01814 1.22530 0.98213 0.96051 0.95333 0.90012 1.23060 0.97846 0.99914 0.96195 1.21887 0.92929 0.88823 0.93075 0.91283 1.22447 1.01493 0.99417 0.94617 1.45245 1.38073 1.20809 1.28299 1.18872 1.25384 0.99993 0.95052 0.87425 1.25337 0.97578 0.95755 0.97719 1.69761 1.22596 1.32982 1.28429 0.86892 0.81279 0.75886 0.84987 1.21460 1.23063 1.19356 1.22390 0.90462 0.92618 0.96601 1.23596 1.00179 0.85415 0.94713 1.20498 1.01536 0.93373 0.97214 1.84270 1.63704 1.22591 1.38602 0.91166 0.92736 0.91012 0.89398 0.86927 0.69791 0.90610 0.91772 0.91358 0.91834 0.91469 0.91076 0.92671 0.96368 0.91799 0.89647 0.90800 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.02 -0.31 6.56 -27.88 -0.18 -0.49 16 3 C 0.19 3.14 7.56 -13.08 -0.10 3.04 16 4 N -0.43 -8.61 10.78 -7.65 -0.08 -8.69 16 5 C -0.06 -1.23 6.99 -83.02 -0.58 -1.81 16 6 C 0.58 11.70 6.11 -12.52 -0.08 11.62 16 7 O -0.56 -11.21 13.36 5.27 0.07 -11.14 16 8 N -0.68 -13.88 2.76 -54.87 -0.15 -14.03 16 9 C 0.16 2.92 2.73 -67.92 -0.19 2.73 16 10 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 11 C -0.12 -2.02 5.15 -26.21 -0.14 -2.16 16 12 C -0.10 -1.77 4.33 -87.92 -0.38 -2.15 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C -0.13 -2.31 6.18 -24.29 -0.15 -2.46 16 15 C 0.14 2.88 3.05 -65.62 -0.20 2.68 16 16 H 0.07 1.56 3.31 -51.93 -0.17 1.39 16 17 C -0.14 -2.57 5.42 -26.27 -0.14 -2.71 16 18 N -0.60 -13.76 1.38 -161.37 -0.22 -13.98 16 19 C -0.27 -7.11 8.83 -15.06 -0.13 -7.24 16 20 H 0.11 3.08 7.56 -52.49 -0.40 2.69 16 21 C 0.04 1.04 5.44 -17.43 -0.09 0.94 16 22 N -0.90 -26.18 13.96 55.49 0.77 -25.41 16 23 Si 0.88 21.77 24.79 -169.99 -4.21 17.56 16 24 H -0.29 -6.91 6.77 56.52 0.38 -6.53 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.27 -6.57 7.01 56.52 0.40 -6.17 16 27 C 0.10 2.17 5.75 -2.83 -0.02 2.15 16 28 C 0.02 0.28 7.44 -35.08 -0.26 0.02 16 29 C -0.07 -0.87 9.93 36.01 0.36 -0.51 16 30 O -0.20 -3.24 10.73 6.53 0.07 -3.17 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.44 10.10 3.53 -40.82 -0.14 9.95 16 37 H 0.08 1.31 6.65 -51.93 -0.35 0.96 16 38 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 39 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 40 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 41 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.26 7.36 8.32 -40.82 -0.34 7.02 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.39 3.99 -58.40 -0.23 1.15 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.11 1.51 6.40 -51.93 -0.33 1.17 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -31.10 361.12 -7.31 -38.41 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.08 Total: 12.73 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.91 Total: 2.28 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.32 Total: -62.11 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.14 Total: -14.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.21 Total: 17.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.10 -7.31 -38.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047158010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.780 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds