Wall clock time and date at job start Tue Mar 31 2020 17:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47010 * 2 1 4 4 O 1.33491 * 126.82797 * 269.99936 * 3 2 1 5 5 N 1.20654 * 113.15616 * 180.02562 * 4 3 2 6 6 C 1.30014 * 112.29978 * 359.73026 * 5 4 3 7 7 C 1.50704 * 127.33209 * 180.27254 * 6 5 4 8 8 C 1.37355 * 126.82604 * 89.99737 * 3 2 1 9 9 C 1.47395 * 128.57258 * 359.96473 * 8 3 2 10 10 O 1.21617 * 120.00212 * 89.99388 * 9 8 3 11 11 N 1.34781 * 120.00099 * 270.00519 * 9 8 3 12 12 C 1.46495 * 119.99999 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.32800 * 35.34944 * 12 11 9 14 14 C 1.53033 * 109.32652 * 154.99691 * 12 11 9 15 15 C 1.53962 * 108.83035 * 175.67417 * 14 12 11 16 16 H 1.09001 * 112.99516 * 168.08827 * 15 14 12 17 17 C 1.55425 * 106.41780 * 293.81972 * 15 14 12 18 18 C 1.55458 * 100.23263 * 73.19196 * 17 15 14 19 19 H 1.09001 * 113.04138 * 163.20726 * 18 17 15 20 20 C 1.52990 * 109.32392 * 275.88042 * 12 11 9 21 21 N 1.47792 * 104.11187 * 40.87047 * 18 17 15 22 22 C 1.36938 * 125.85015 * 153.44061 * 21 18 17 23 23 H 1.07996 * 120.00719 * 5.55455 * 22 21 18 24 24 C 1.38817 * 119.99875 * 185.54862 * 22 21 18 25 25 N 1.31623 * 119.99547 * 7.28530 * 24 22 21 26 26 Si 1.86794 * 120.00269 * 187.28746 * 24 22 21 27 27 H 1.48504 * 109.46918 * 265.01333 * 26 24 22 28 28 H 1.48502 * 109.47093 * 25.01119 * 26 24 22 29 29 H 1.48499 * 109.47296 * 145.01544 * 26 24 22 30 30 C 1.47074 * 108.29222 * 333.17638 * 21 18 17 31 31 H 1.09000 * 109.46733 * 60.00145 * 1 2 3 32 32 H 1.08999 * 109.47542 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47109 * 300.00336 * 1 2 3 34 34 H 1.08997 * 109.47109 * 239.99663 * 2 1 3 35 35 H 1.09000 * 109.46733 * 119.99855 * 2 1 3 36 36 H 1.09001 * 109.47330 * 270.14435 * 7 6 5 37 37 H 1.08995 * 109.47091 * 30.15499 * 7 6 5 38 38 H 1.08999 * 109.46921 * 150.15174 * 7 6 5 39 39 H 0.96999 * 120.00046 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.57836 * 55.86401 * 14 12 11 41 41 H 1.09005 * 109.68011 * 295.54032 * 14 12 11 42 42 H 1.08997 * 111.24047 * 191.14925 * 17 15 14 43 43 H 1.09002 * 111.23457 * 315.60213 * 17 15 14 44 44 H 1.09003 * 109.53357 * 304.53596 * 20 12 11 45 45 H 1.09004 * 109.53055 * 64.68270 * 20 12 11 46 46 H 0.97002 * 119.99328 * 180.02562 * 25 24 22 47 47 H 1.09003 * 109.97841 * 120.72280 * 30 21 18 48 48 H 1.08998 * 109.98197 * 241.96694 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2991 2.1753 -1.0685 5 7 2.6903 3.2804 -0.7833 6 6 2.7503 3.4661 0.5021 7 6 3.1844 4.7146 1.2259 8 6 2.3067 2.1971 1.0995 9 6 2.1821 1.8470 2.5258 10 8 3.1235 1.3510 3.1147 11 7 1.0249 2.0765 3.1775 12 6 0.9009 1.7280 4.5949 13 1 1.8533 1.9049 5.0946 14 6 -0.1785 2.6013 5.2386 15 6 -0.3758 2.1524 6.6981 16 1 -0.9739 2.8523 7.2817 17 6 -0.9659 0.7157 6.6399 18 6 0.2933 -0.0824 6.1994 19 1 0.1994 -1.1550 6.3690 20 6 0.5336 0.2483 4.7223 21 7 1.3931 0.5188 6.9825 22 6 2.5532 -0.1096 7.3492 23 1 2.7653 -1.1054 6.9889 24 6 3.4568 0.5333 8.1841 25 7 3.1372 1.6837 8.7382 26 14 5.1262 -0.2339 8.5212 27 1 5.0647 -1.0198 9.7797 28 1 5.4957 -1.1296 7.3958 29 1 6.1454 0.8377 8.6561 30 6 1.0308 1.9096 7.2948 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.2595 4.6774 1.4018 37 1 2.9454 5.5880 0.6191 38 1 2.6623 4.7814 2.1803 39 1 0.2741 2.4723 2.7079 40 1 -1.1145 2.4876 4.6917 41 1 0.1329 3.6457 5.2166 42 1 -1.3192 0.3940 7.6195 43 1 -1.7575 0.6440 5.8939 44 1 -0.3722 0.0471 4.1503 45 1 1.3500 -0.3640 4.3393 46 1 3.7688 2.1331 9.3213 47 1 1.0073 2.0547 8.3749 48 1 1.7505 2.5924 6.8432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047200330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:56 Heat of formation + Delta-G solvation = 24.303486 kcal Electronic energy + Delta-G solvation = -30353.661863 eV Core-core repulsion = 26411.406580 eV Total energy + Delta-G solvation = -3942.255283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.98553 -41.56766 -40.09461 -36.14173 -35.86239 -35.61272 -34.66817 -32.36901 -31.73206 -31.04807 -29.99438 -29.64526 -27.18902 -26.00544 -24.91567 -24.64691 -23.04050 -21.80964 -21.25751 -20.86348 -20.19628 -19.01661 -18.87168 -18.75868 -17.49485 -17.42365 -16.57630 -16.22813 -16.20231 -15.63345 -15.27851 -15.23490 -14.94358 -14.45568 -14.38522 -14.25194 -14.12319 -13.89450 -13.82178 -13.48873 -13.46561 -13.33111 -13.20707 -12.98159 -12.62229 -12.56135 -12.50935 -12.48714 -12.16036 -11.92463 -11.87525 -11.65380 -11.55317 -11.19241 -11.09523 -10.99473 -10.89701 -10.68017 -10.50198 -10.06987 -8.80319 -7.79848 -5.14508 0.22189 0.77477 1.31164 1.39074 1.42359 1.50307 1.71071 2.22804 2.49497 3.03530 3.16934 3.35864 3.66405 3.69416 3.81233 3.84610 3.95003 4.08815 4.14057 4.22673 4.27912 4.39292 4.42654 4.45049 4.48475 4.55253 4.61679 4.64816 4.69056 4.77230 4.81904 4.86076 4.98702 5.00897 5.05029 5.12720 5.20952 5.27667 5.32403 5.34596 5.39134 5.51570 5.53530 5.63932 5.70828 5.88730 6.26847 6.48502 7.11248 7.15690 7.17264 7.84929 8.48545 9.27019 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003896 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.845992 B = 7184.304185 C = 7847.015753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C 0.039 3.961 4 O 0.097 5.903 5 N -0.372 5.372 6 C 0.050 3.950 7 C -0.079 4.079 8 C -0.270 4.270 9 C 0.598 3.402 10 O -0.572 6.572 11 N -0.693 5.693 12 C 0.154 3.846 13 H 0.049 0.951 14 C -0.102 4.102 15 C -0.105 4.105 16 H 0.109 0.891 17 C -0.110 4.110 18 C 0.140 3.860 19 H 0.062 0.938 20 C -0.122 4.122 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.070 0.930 24 C -0.064 4.064 25 N -0.946 5.946 26 Si 0.960 3.040 27 H -0.281 1.281 28 H -0.279 1.279 29 H -0.297 1.297 30 C 0.182 3.818 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.414 0.586 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.023 0.977 46 H 0.243 0.757 47 H 0.018 0.982 48 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 1.900 -18.823 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.025 4.025 4 O 0.037 5.963 5 N -0.080 5.080 6 C -0.112 4.112 7 C -0.137 4.137 8 C -0.278 4.278 9 C 0.383 3.617 10 O -0.450 6.450 11 N -0.343 5.343 12 C 0.050 3.950 13 H 0.067 0.933 14 C -0.140 4.140 15 C -0.125 4.125 16 H 0.127 0.873 17 C -0.148 4.148 18 C 0.034 3.966 19 H 0.081 0.919 20 C -0.163 4.163 21 N -0.337 5.337 22 C -0.355 4.355 23 H 0.088 0.912 24 C -0.257 4.257 25 N -0.596 5.596 26 Si 0.790 3.210 27 H -0.208 1.208 28 H -0.205 1.205 29 H -0.224 1.224 30 C 0.057 3.943 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.251 0.749 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.036 0.964 48 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges -12.199 2.334 -19.342 22.986 hybrid contribution 1.647 -0.347 1.251 2.097 sum -10.552 1.986 -18.091 21.037 Atomic orbital electron populations 1.21787 0.90922 1.04444 1.03036 1.20482 0.98602 0.83890 1.05892 1.25141 0.96392 0.96791 0.84201 1.84496 1.61443 1.17346 1.32974 1.73584 1.18440 0.99323 1.16605 1.25095 0.99937 0.97108 0.89018 1.20328 1.02552 0.91035 0.99756 1.21881 1.14844 0.96484 0.94550 1.17125 0.82794 0.77425 0.84398 1.90915 1.40406 1.45020 1.68673 1.45924 1.14154 1.62658 1.11574 1.20929 1.00061 0.95103 0.78899 0.93287 1.21922 0.98499 0.98261 0.95321 1.22770 0.96075 0.97807 0.95818 0.87272 1.22982 0.96134 0.93899 1.01771 1.21804 0.88334 0.96435 0.90056 0.91950 1.22327 1.00446 0.95001 0.98512 1.44832 1.16985 1.09734 1.62131 1.19282 0.95400 0.98955 1.21861 0.91212 1.25417 1.01799 0.98304 1.00144 1.70150 1.35295 1.18234 1.35903 0.85316 0.80688 0.77142 0.77840 1.20793 1.20495 1.22407 1.21120 0.91685 0.84647 0.96826 0.90879 0.89116 0.92470 0.86297 0.89568 0.89732 0.87840 0.89720 0.74901 0.87594 0.91631 0.92126 0.87326 0.88923 0.95769 0.94793 0.96389 0.99209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.05 -0.79 6.38 29.85 0.19 -0.60 16 3 C 0.04 0.86 6.80 25.48 0.17 1.03 16 4 O 0.10 2.27 11.06 77.01 0.85 3.13 16 5 N -0.37 -9.65 12.01 -44.78 -0.54 -10.19 16 6 C 0.05 1.31 7.59 45.16 0.34 1.65 16 7 C -0.08 -1.69 10.49 71.24 0.75 -0.94 16 8 C -0.27 -7.41 6.24 -18.75 -0.12 -7.53 16 9 C 0.60 19.99 7.55 86.65 0.65 20.65 16 10 O -0.57 -26.47 16.77 -4.08 -0.07 -26.54 16 11 N -0.69 -18.85 5.07 -445.79 -2.26 -21.11 16 12 C 0.15 5.19 2.07 45.00 0.09 5.28 16 13 H 0.05 2.37 5.39 -2.39 -0.01 2.36 16 14 C -0.10 -2.69 4.95 30.93 0.15 -2.54 16 15 C -0.11 -3.36 4.33 -9.05 -0.04 -3.40 16 16 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 17 C -0.11 -3.19 6.20 32.27 0.20 -2.99 16 18 C 0.14 5.35 4.26 45.68 0.19 5.54 16 19 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.12 -4.09 5.26 30.68 0.16 -3.93 16 21 N -0.61 -31.10 2.44 -665.04 -1.62 -32.72 16 22 C -0.23 -13.17 10.28 84.03 0.86 -12.31 16 23 H 0.07 4.03 7.84 -2.91 -0.02 4.00 16 24 C -0.06 -3.82 5.45 84.86 0.46 -3.36 16 25 N -0.95 -58.98 10.49 21.65 0.23 -58.75 16 26 Si 0.96 49.23 29.56 68.60 2.03 51.26 16 27 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 30 C 0.18 8.77 4.17 86.86 0.36 9.13 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.68 8.11 -2.39 -0.02 1.66 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 7.77 8.58 -92.71 -0.80 6.98 16 40 H 0.11 1.83 7.97 -2.39 -0.02 1.82 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 2.18 7.75 -2.39 -0.02 2.17 16 44 H 0.09 2.24 8.00 -2.39 -0.02 2.22 16 45 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.24 14.83 8.31 -92.71 -0.77 14.05 16 47 H 0.02 1.00 6.90 -2.39 -0.02 0.99 16 48 H -0.01 -0.56 6.62 -2.39 -0.02 -0.58 16 Total: -1.00 -81.21 383.83 3.96 -77.25 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.18 Total: 12.84 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.16 Total: 4.82 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -4.19 Total: -122.77 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.78 Total: -23.41 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -81.21 3.96 -77.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047200330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.554 kcal (2) G-P(sol) polarization free energy of solvation -81.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds