Wall clock time and date at job start Tue Mar 31 2020 17:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47296 * 2 1 4 4 O 1.33489 * 126.82676 * 270.10865 * 3 2 1 5 5 N 1.20664 * 113.15210 * 180.29940 * 4 3 2 6 6 C 1.30009 * 112.30136 * 359.75918 * 5 4 3 7 7 C 1.50701 * 127.33265 * 179.97438 * 6 5 4 8 8 C 1.37356 * 126.82816 * 90.00140 * 3 2 1 9 9 C 1.47400 * 128.56396 * 0.02562 * 8 3 2 10 10 O 1.21609 * 119.99799 * 269.69642 * 9 8 3 11 11 N 1.34776 * 120.00130 * 89.69928 * 9 8 3 12 12 C 1.46796 * 119.57594 * 359.97438 * 11 9 8 13 13 C 1.53462 * 107.60201 * 127.96314 * 12 11 9 14 14 C 1.52739 * 108.43821 * 58.07363 * 13 12 11 15 15 C 1.53008 * 110.79703 * 296.22545 * 14 13 12 16 16 H 1.08993 * 111.38810 * 290.28981 * 15 14 13 17 17 C 1.45114 * 119.57610 * 180.02562 * 11 9 8 18 18 H 1.09001 * 109.97305 * 348.04717 * 17 11 9 19 19 C 1.54414 * 111.61424 * 111.33327 * 17 11 9 20 20 C 1.54601 * 102.52632 * 156.39074 * 19 17 11 21 21 N 1.47117 * 107.23580 * 338.65220 * 20 19 17 22 22 C 1.36945 * 125.76459 * 177.31654 * 21 20 19 23 23 H 1.07999 * 120.00077 * 179.69785 * 22 21 20 24 24 C 1.38812 * 119.99637 * 359.69619 * 22 21 20 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47102 * 119.99824 * 26 24 22 29 29 H 1.48500 * 109.47389 * 240.00173 * 26 24 22 30 30 H 1.09000 * 109.46995 * 299.99799 * 1 2 3 31 31 H 1.08998 * 109.47350 * 59.99595 * 1 2 3 32 32 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46995 * 240.00201 * 2 1 3 34 34 H 1.08998 * 109.47350 * 120.00405 * 2 1 3 35 35 H 1.09000 * 109.47414 * 269.99626 * 7 6 5 36 36 H 1.08995 * 109.47213 * 30.00081 * 7 6 5 37 37 H 1.09003 * 109.47285 * 149.99982 * 7 6 5 38 38 H 1.09006 * 109.83065 * 8.43797 * 12 11 9 39 39 H 1.09002 * 109.89003 * 247.51653 * 12 11 9 40 40 H 1.09003 * 109.63879 * 298.39281 * 13 12 11 41 41 H 1.08999 * 109.81574 * 177.86643 * 13 12 11 42 42 H 1.09000 * 109.20986 * 175.88599 * 14 13 12 43 43 H 1.08991 * 109.21179 * 56.56846 * 14 13 12 44 44 H 1.08999 * 110.81163 * 274.81855 * 19 17 11 45 45 H 1.08999 * 110.81462 * 38.34441 * 19 17 11 46 46 H 1.08997 * 109.99082 * 219.19328 * 20 19 17 47 47 H 1.08996 * 109.78746 * 98.00691 * 20 19 17 48 48 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2971 2.1759 -1.0685 5 7 2.6940 3.2791 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 3.2093 4.7057 1.2259 8 6 2.3068 2.1971 1.0995 9 6 2.1834 1.8464 2.5258 10 8 1.1413 2.0576 3.1159 11 7 3.2256 1.2918 3.1760 12 6 4.4790 1.0405 2.4545 13 6 5.6170 1.6730 3.2670 14 6 5.6134 1.0564 4.6644 15 6 4.3185 1.3967 5.4051 16 1 4.2760 2.4540 5.6662 17 6 3.0937 0.9497 4.5801 18 1 2.1866 1.3953 4.9883 19 6 3.0960 -0.5793 4.7956 20 6 3.5621 -0.7103 6.2639 21 7 4.2658 0.5343 6.6105 22 6 4.7894 0.8426 7.8378 23 1 5.2939 1.7855 7.9883 24 6 4.6717 -0.0571 8.8884 25 7 4.0573 -1.2065 8.7048 26 14 5.3865 0.3630 10.5623 27 1 6.0218 1.7041 10.5068 28 1 4.3013 0.3714 11.5760 29 1 6.4042 -0.6523 10.9349 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.2843 4.6575 1.3996 36 1 2.9780 5.5820 0.6203 37 1 2.6898 4.7771 2.1815 38 1 4.4338 1.4956 1.4651 39 1 4.6440 -0.0328 2.3606 40 1 5.4601 2.7491 3.3410 41 1 6.5724 1.4745 2.7813 42 1 6.4618 1.4429 5.2291 43 1 5.7038 -0.0264 4.5789 44 1 2.0947 -0.9901 4.6668 45 1 3.8042 -1.0641 4.1237 46 1 4.2382 -1.5591 6.3659 47 1 2.6979 -0.8414 6.9151 48 1 3.9754 -1.8353 9.4389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049896536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:48 Heat of formation + Delta-G solvation = 49.513263 kcal Electronic energy + Delta-G solvation = -30494.797525 eV Core-core repulsion = 26553.635420 eV Total energy + Delta-G solvation = -3941.162105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.02798 -40.36227 -38.03870 -35.38609 -34.97716 -34.64291 -32.47399 -32.25139 -30.54729 -29.13528 -28.88315 -28.28161 -25.68899 -24.32669 -24.22670 -23.56099 -22.06479 -20.86110 -20.14952 -19.72954 -18.41360 -17.97580 -17.49498 -16.92480 -16.63820 -15.83233 -15.35828 -14.80296 -14.54204 -14.42660 -14.25762 -13.94196 -13.79845 -13.54502 -13.47379 -13.32999 -13.15278 -12.91808 -12.72962 -12.52661 -12.13475 -12.00371 -11.85488 -11.71603 -11.44323 -11.10847 -11.08619 -11.03971 -10.83408 -10.68594 -10.58696 -10.29645 -10.07857 -10.01970 -9.83570 -9.69242 -9.66299 -9.44779 -8.66261 -8.38934 -6.89932 -5.74459 -3.08717 1.15208 1.76260 2.40915 2.66591 3.14363 3.38144 3.44002 3.46116 3.91611 4.05287 4.45371 4.47946 4.66074 4.84917 4.86836 4.92212 5.01240 5.11094 5.23538 5.26145 5.28889 5.31927 5.41158 5.44515 5.51542 5.53248 5.55513 5.58121 5.65850 5.68522 5.79695 5.85906 5.93742 5.94590 6.05081 6.14106 6.25564 6.30285 6.44017 6.52880 6.67315 6.89158 6.99927 7.45271 7.51821 7.57549 7.78973 8.06216 8.15940 8.21378 9.17147 9.76695 10.42010 11.36759 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.003317 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.862585 B = 8440.472135 C = 9026.812587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C 0.015 3.985 4 O 0.095 5.905 5 N -0.358 5.358 6 C 0.054 3.946 7 C -0.078 4.078 8 C -0.236 4.236 9 C 0.593 3.407 10 O -0.527 6.527 11 N -0.579 5.579 12 C 0.109 3.891 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.061 0.939 17 C 0.130 3.870 18 H 0.103 0.897 19 C -0.151 4.151 20 C 0.181 3.819 21 N -0.598 5.598 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.053 0.947 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 3.498 -19.446 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.049 4.049 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.243 4.243 9 C 0.378 3.622 10 O -0.403 6.403 11 N -0.310 5.310 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.048 3.952 16 H 0.079 0.921 17 C 0.027 3.973 18 H 0.121 0.879 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.322 5.322 22 C -0.355 4.355 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.663 4.238 -19.913 20.426 hybrid contribution 0.429 -0.163 1.599 1.664 sum -1.233 4.074 -18.313 18.802 Atomic orbital electron populations 1.21790 0.92805 1.03107 1.03213 1.20245 0.97336 0.85728 1.05076 1.24650 0.98953 0.96182 0.85085 1.84513 1.61566 1.17591 1.32961 1.73605 1.17495 0.98758 1.16577 1.24744 1.00348 0.96759 0.88968 1.20237 1.02289 0.91251 0.99817 1.21937 1.11765 0.95290 0.95330 1.16993 0.83701 0.77585 0.83903 1.90822 1.28266 1.53775 1.67429 1.47574 1.12487 1.59884 1.11084 1.21807 0.83669 1.00842 0.95069 1.21917 0.97279 1.00461 0.97413 1.22130 1.00337 1.01026 0.93522 1.21384 0.91177 0.95130 0.87535 0.92112 1.21868 1.00905 0.96432 0.78136 0.87854 1.23125 1.00665 0.94485 1.00763 1.21185 0.96399 0.89040 0.87811 1.44742 1.66154 1.15382 1.05955 1.19078 1.29439 1.01706 0.85280 0.90370 1.24788 1.00770 0.96562 0.98136 1.69960 1.47154 1.08731 1.30928 0.86058 0.78227 0.77436 0.84106 1.20525 1.21745 1.21792 0.91472 0.92020 0.90900 0.88751 0.88316 0.89550 0.89999 0.89616 0.90638 0.91053 0.91810 0.91254 0.92018 0.91776 0.91914 0.92226 0.94019 0.92919 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.15 0.37 -0.88 16 2 C -0.05 -0.38 6.38 -27.88 -0.18 -0.56 16 3 C 0.01 0.16 6.80 -34.63 -0.24 -0.07 16 4 O 0.10 1.12 11.06 18.66 0.21 1.32 16 5 N -0.36 -4.56 12.01 34.78 0.42 -4.14 16 6 C 0.05 0.67 7.49 -79.77 -0.60 0.07 16 7 C -0.08 -0.78 10.49 36.01 0.38 -0.40 16 8 C -0.24 -3.08 4.12 -102.90 -0.42 -3.50 16 9 C 0.59 9.16 7.44 -12.53 -0.09 9.07 16 10 O -0.53 -10.06 16.43 5.27 0.09 -9.97 16 11 N -0.58 -8.55 2.73 -166.25 -0.45 -9.01 16 12 C 0.11 1.31 6.06 -3.64 -0.02 1.29 16 13 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 14 C -0.13 -2.16 5.10 -26.86 -0.14 -2.30 16 15 C 0.16 3.04 3.61 -66.26 -0.24 2.80 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.13 2.34 3.10 -67.26 -0.21 2.13 16 18 H 0.10 2.11 6.96 -51.93 -0.36 1.75 16 19 C -0.15 -2.75 6.08 -25.15 -0.15 -2.90 16 20 C 0.18 4.21 5.19 -2.86 -0.01 4.20 16 21 N -0.60 -14.45 2.91 -162.06 -0.47 -14.93 16 22 C -0.23 -6.08 10.29 -15.06 -0.15 -6.24 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 25 N -0.92 -26.37 10.33 55.49 0.57 -25.80 16 26 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.82 6.18 -51.93 -0.32 0.50 16 39 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.14 7.11 -51.93 -0.37 0.77 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.99 6.80 -51.93 -0.35 0.64 16 46 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 47 H 0.05 1.39 7.28 -51.93 -0.38 1.01 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -31.32 381.42 -8.50 -39.82 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.61 Total: -0.37 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.97 Total: 0.62 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.06 Total: -53.87 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.29 Total: -8.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.32 -8.50 -39.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049896536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.333 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds