Wall clock time and date at job start Tue Mar 31 2020 18:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47034 * 2 1 4 4 O 1.34262 * 126.52563 * 270.00236 * 3 2 1 5 5 C 1.34051 * 108.22690 * 180.02562 * 4 3 2 6 6 N 1.29938 * 109.24358 * 359.71753 * 5 4 3 7 7 C 1.36067 * 108.47439 * 0.44589 * 6 5 4 8 8 C 1.47425 * 126.44684 * 179.82523 * 7 6 5 9 9 O 1.21612 * 119.99859 * 173.75546 * 8 7 6 10 10 N 1.34773 * 119.99746 * 353.47866 * 8 7 6 11 11 C 1.46934 * 120.70556 * 4.93355 * 10 8 7 12 12 C 1.52715 * 109.15469 * 234.15702 * 11 10 8 13 13 C 1.53157 * 109.35734 * 304.98127 * 12 11 10 14 14 C 1.52232 * 109.69346 * 60.01678 * 13 12 11 15 15 C 1.54494 * 110.27418 * 63.06997 * 14 13 12 16 16 C 1.55022 * 101.52814 * 153.38214 * 15 14 13 17 17 N 1.47487 * 104.90597 * 323.64743 * 16 15 14 18 18 C 1.36937 * 125.66358 * 204.02592 * 17 16 15 19 19 H 1.08002 * 119.99722 * 179.97438 * 18 17 16 20 20 C 1.38805 * 120.00294 * 359.97438 * 18 17 16 21 21 N 1.31625 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47171 * 89.99937 * 22 20 18 24 24 H 1.48507 * 109.46942 * 209.99864 * 22 20 18 25 25 H 1.48497 * 109.47162 * 329.99981 * 22 20 18 26 26 C 1.47189 * 108.67046 * 24.00627 * 17 16 15 27 27 C 1.47074 * 120.70029 * 185.21179 * 10 8 7 28 28 H 1.08999 * 109.46972 * 300.00138 * 1 2 3 29 29 H 1.09004 * 109.46841 * 60.00318 * 1 2 3 30 30 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46972 * 239.99862 * 2 1 3 32 32 H 1.08996 * 109.47056 * 119.99812 * 2 1 3 33 33 H 1.08001 * 125.37520 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.56715 * 354.02981 * 11 10 8 35 35 H 1.09004 * 109.57158 * 114.38043 * 11 10 8 36 36 H 1.08996 * 109.58142 * 184.94258 * 12 11 10 37 37 H 1.09004 * 109.38663 * 64.89347 * 12 11 10 38 38 H 1.09005 * 109.43292 * 299.95184 * 13 12 11 39 39 H 1.09004 * 109.39951 * 180.02562 * 13 12 11 40 40 H 1.09000 * 111.01512 * 271.44551 * 15 14 13 41 41 H 1.09001 * 111.01530 * 35.32244 * 15 14 13 42 42 H 1.08997 * 110.35838 * 204.79105 * 16 15 14 43 43 H 1.08999 * 110.44686 * 82.54776 * 16 15 14 44 44 H 0.96997 * 120.00604 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.90678 * 239.11681 * 26 17 16 46 46 H 1.09007 * 109.90704 * 117.85441 * 26 17 16 47 47 H 1.09001 * 109.57113 * 247.36547 * 27 10 8 48 48 H 1.08999 * 109.57322 * 7.61638 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2987 2.1742 -1.0789 5 6 2.7234 3.3739 -0.6580 6 7 2.7253 3.3960 0.6412 7 6 2.3028 2.1843 1.0936 8 6 2.1591 1.7773 2.5032 9 8 1.6630 0.7015 2.7779 10 7 2.5827 2.5950 3.4872 11 6 3.0905 3.9390 3.1794 12 6 4.4803 4.1018 3.7910 13 6 4.4139 3.7969 5.2905 14 6 3.9321 2.3685 5.5027 15 6 4.9412 1.3676 4.8969 16 6 4.6902 0.1096 5.7672 17 7 4.4137 0.6321 7.1185 18 6 4.5863 -0.0545 8.2907 19 1 4.3543 0.4193 9.2331 20 6 5.0593 -1.3592 8.2677 21 7 5.3415 -1.9368 7.1191 22 14 5.2953 -2.2955 9.8668 23 1 4.0435 -3.0186 10.2065 24 1 6.4037 -3.2713 9.7100 25 1 5.6264 -1.3409 10.9550 26 6 3.9220 2.0141 6.9978 27 6 2.5521 2.1586 4.8914 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0132 4.1944 -1.2978 34 1 3.1517 4.0674 2.0987 35 1 2.4197 4.6880 3.6003 36 1 4.8272 5.1244 3.6426 37 1 5.1710 3.4097 3.3092 38 1 3.7215 4.4883 5.7709 39 1 5.4055 3.9134 5.7279 40 1 4.7144 1.1698 3.8493 41 1 5.9642 1.7254 5.0129 42 1 5.5760 -0.5253 5.7803 43 1 3.8311 -0.4471 5.3930 44 1 5.6724 -2.8485 7.1030 45 1 4.5790 2.6909 7.5442 46 1 2.9067 2.0823 7.3885 47 1 1.8164 2.7464 5.4405 48 1 2.2859 1.1028 4.9400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054105155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:34 Heat of formation + Delta-G solvation = 2.535122 kcal Electronic energy + Delta-G solvation = -30341.400363 eV Core-core repulsion = 26398.201133 eV Total energy + Delta-G solvation = -3943.199230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.50809 -41.56242 -39.70302 -37.41570 -36.01368 -35.13902 -34.64098 -33.25832 -31.70457 -30.49518 -30.21824 -27.64806 -27.01806 -25.47016 -25.02261 -24.34095 -22.99314 -22.70306 -22.08678 -20.79626 -19.66652 -18.68255 -18.47756 -17.85358 -17.57288 -16.97353 -16.83026 -16.49952 -15.95486 -15.80516 -15.75276 -15.40735 -15.23139 -14.80118 -14.59118 -14.39302 -14.09721 -13.99984 -13.83912 -13.59505 -13.47703 -13.34710 -12.97372 -12.79765 -12.73421 -12.53786 -12.44671 -12.30605 -12.11445 -12.04750 -11.95335 -11.86090 -11.56015 -11.45339 -11.29191 -11.07331 -10.75748 -10.47800 -10.06867 -9.56214 -8.90554 -7.77571 -5.22979 0.04205 1.04475 1.44216 1.47385 1.52707 1.55997 1.93942 2.21946 2.48861 3.03278 3.31673 3.51254 3.58045 3.66271 3.69600 3.81417 3.95938 4.06711 4.17660 4.21333 4.24930 4.27931 4.35640 4.47718 4.54574 4.59182 4.67073 4.69319 4.74839 4.82312 4.87504 4.89189 4.92802 4.97965 5.01963 5.10387 5.11279 5.20544 5.23773 5.35204 5.44207 5.47074 5.49686 5.58611 5.78114 5.82218 6.26864 6.29473 6.54065 7.05894 7.08436 7.76602 8.42270 9.24729 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.003436 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.072882 B = 8147.305115 C = 9275.029796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.047 3.953 4 O -0.193 6.193 5 C 0.204 3.796 6 N -0.483 5.483 7 C -0.091 4.091 8 C 0.585 3.415 9 O -0.571 6.571 10 N -0.587 5.587 11 C 0.059 3.941 12 C -0.121 4.121 13 C -0.098 4.098 14 C -0.069 4.069 15 C -0.107 4.107 16 C 0.164 3.836 17 N -0.625 5.625 18 C -0.239 4.239 19 H 0.084 0.916 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.265 1.265 26 C 0.144 3.856 27 C 0.137 3.863 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.311 0.689 34 H 0.162 0.838 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.067 0.933 43 H -0.028 1.028 44 H 0.246 0.754 45 H 0.039 0.961 46 H 0.023 0.977 47 H 0.077 0.923 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 16.186 -20.199 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C -0.010 4.010 4 O -0.080 6.080 5 C -0.023 4.023 6 N -0.211 5.211 7 C -0.209 4.209 8 C 0.374 3.626 9 O -0.451 6.451 10 N -0.318 5.318 11 C -0.062 4.062 12 C -0.159 4.159 13 C -0.135 4.135 14 C -0.070 4.070 15 C -0.146 4.146 16 C 0.038 3.962 17 N -0.351 5.351 18 C -0.368 4.368 19 H 0.102 0.898 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.811 3.189 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.190 1.190 26 C 0.018 3.982 27 C 0.015 3.985 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.326 0.674 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.085 0.915 43 H -0.010 1.010 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.763 15.978 -19.597 25.934 hybrid contribution -0.033 -1.581 0.867 1.804 sum -5.796 14.397 -18.729 24.324 Atomic orbital electron populations 1.21647 0.92266 1.03629 1.01847 1.20380 0.97778 0.85104 1.05324 1.23857 0.97904 0.95950 0.83287 1.84417 1.63676 1.24634 1.35235 1.29459 0.94858 0.86920 0.91065 1.70091 1.19937 1.19998 1.11086 1.21188 1.12352 0.92969 0.94370 1.17266 0.78084 0.83351 0.83902 1.90792 1.46764 1.23878 1.83649 1.47983 1.61496 1.16779 1.05513 1.23117 0.94544 0.80588 1.07970 1.21772 0.96774 1.02993 0.94347 1.21408 1.01701 0.92858 0.97578 1.21245 0.94479 0.97081 0.94173 1.22663 0.98335 0.96108 0.97469 1.21587 0.97945 0.93390 0.83247 1.44858 1.76549 1.11133 1.02530 1.19512 1.36237 0.95399 0.85673 0.89798 1.25700 1.02079 0.98010 1.00458 1.70108 1.52025 1.13242 1.24829 0.85004 0.76913 0.78182 0.78782 1.21559 1.21907 1.18983 1.21410 0.96518 0.86040 0.94184 1.21311 0.96402 1.00053 0.80773 0.94225 0.90936 0.89907 0.87108 0.89374 0.67438 0.82240 0.90995 0.87738 0.93158 0.90194 0.91405 0.92918 0.91704 0.91475 1.01025 0.94483 0.94300 0.95948 0.90441 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.90 71.98 0.71 -1.92 16 2 C -0.05 -1.04 5.87 29.85 0.18 -0.87 16 3 C 0.05 1.08 6.69 25.18 0.17 1.24 16 4 O -0.19 -3.13 10.73 0.33 0.00 -3.13 16 5 C 0.20 2.32 13.19 130.52 1.72 4.04 16 6 N -0.48 -9.56 7.68 -305.14 -2.34 -11.91 16 7 C -0.09 -2.46 6.75 40.41 0.27 -2.18 16 8 C 0.59 20.28 7.69 86.66 0.67 20.95 16 9 O -0.57 -23.74 14.33 -4.07 -0.06 -23.80 16 10 N -0.59 -18.78 2.52 -824.83 -2.08 -20.86 16 11 C 0.06 1.40 6.28 86.20 0.54 1.94 16 12 C -0.12 -2.71 5.89 30.55 0.18 -2.53 16 13 C -0.10 -2.61 4.53 30.39 0.14 -2.47 16 14 C -0.07 -2.48 0.56 -51.91 -0.03 -2.51 16 15 C -0.11 -4.54 4.91 31.79 0.16 -4.38 16 16 C 0.16 8.98 5.56 86.88 0.48 9.46 16 17 N -0.62 -34.44 3.40 -692.49 -2.36 -36.79 16 18 C -0.24 -14.12 10.28 84.03 0.86 -13.26 16 19 H 0.08 4.69 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 21 N -0.95 -60.33 10.09 21.65 0.22 -60.11 16 22 Si 0.98 47.68 29.55 68.60 2.03 49.70 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.14 6.24 6.42 86.47 0.56 6.79 16 27 C 0.14 5.03 4.95 86.07 0.43 5.46 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.47 6.62 -2.39 -0.02 2.45 16 33 H 0.31 -0.66 8.06 -2.91 -0.02 -0.69 16 34 H 0.16 3.53 3.62 -57.93 -0.21 3.32 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.30 7.32 -2.38 -0.02 1.28 16 38 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 40 H 0.05 2.22 7.60 -2.39 -0.02 2.20 16 41 H 0.06 2.64 8.01 -2.39 -0.02 2.62 16 42 H 0.07 4.15 5.88 -2.39 -0.01 4.14 16 43 H -0.03 -1.74 7.67 -2.39 -0.02 -1.76 16 44 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.04 1.61 7.79 -2.39 -0.02 1.59 16 46 H 0.02 0.97 7.80 -2.38 -0.02 0.95 16 47 H 0.08 2.56 8.11 -2.39 -0.02 2.54 16 48 H 0.05 2.48 6.27 -2.39 -0.01 2.47 16 Total: -1.00 -80.52 370.56 3.67 -76.85 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.76 Total: 14.03 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.50 Total: 16.03 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -6.56 Total: -129.68 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Total: -80.52 3.67 -76.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054105155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.381 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds