Wall clock time and date at job start Tue Mar 31 2020 17:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46660 * 2 1 4 4 C 1.38347 * 120.27194 * 90.00247 * 3 2 1 5 5 N 1.31885 * 121.18548 * 179.97438 * 4 3 2 6 6 C 1.32229 * 121.80140 * 0.02562 * 5 4 3 7 7 O 1.35436 * 119.80047 * 179.97438 * 6 5 4 8 8 C 1.40282 * 120.40222 * 0.25578 * 6 5 4 9 9 C 1.47521 * 120.59859 * 179.72670 * 8 6 5 10 10 O 1.21589 * 120.00133 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99746 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99702 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49956 * 324.92881 * 12 11 9 14 14 C 1.53045 * 109.49733 * 204.83726 * 12 11 9 15 15 C 1.53035 * 109.53900 * 178.67962 * 14 12 11 16 16 C 1.53189 * 109.31308 * 61.36799 * 15 14 12 17 17 H 1.09009 * 109.70434 * 65.21814 * 16 15 14 18 18 C 1.52997 * 109.59141 * 185.57750 * 16 15 14 19 19 N 1.46930 * 108.77476 * 305.36475 * 16 15 14 20 20 C 1.36940 * 120.62850 * 233.58803 * 19 16 15 21 21 H 1.07995 * 120.00147 * 29.53123 * 20 19 16 22 22 C 1.38811 * 119.99804 * 209.53388 * 20 19 16 23 23 N 1.31621 * 119.99986 * 15.61169 * 22 20 19 24 24 Si 1.86794 * 120.00221 * 195.61551 * 22 20 19 25 25 H 1.48496 * 109.47208 * 94.71603 * 24 22 20 26 26 H 1.48499 * 109.47592 * 214.72161 * 24 22 20 27 27 H 1.48505 * 109.46879 * 334.71841 * 24 22 20 28 28 C 1.46928 * 118.73952 * 53.60278 * 19 16 15 29 29 C 1.38343 * 120.27014 * 269.97483 * 3 2 1 30 30 H 1.09004 * 109.46669 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47063 * 299.99682 * 1 2 3 32 32 H 1.09000 * 109.47197 * 60.00106 * 1 2 3 33 33 H 1.09000 * 109.47063 * 240.00318 * 2 1 3 34 34 H 1.09000 * 109.47197 * 119.99894 * 2 1 3 35 35 H 1.08005 * 119.41002 * 359.97438 * 4 3 2 36 36 H 0.96691 * 114.00118 * 90.00023 * 7 6 5 37 37 H 0.97002 * 120.00014 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.45662 * 298.70727 * 14 12 11 39 39 H 1.08999 * 109.46003 * 58.65934 * 14 12 11 40 40 H 1.08998 * 109.50302 * 301.41211 * 15 14 12 41 41 H 1.09005 * 109.49523 * 181.31485 * 15 14 12 42 42 H 1.09001 * 109.47136 * 179.29019 * 18 16 15 43 43 H 1.09010 * 109.46561 * 299.28731 * 18 16 15 44 44 H 1.08993 * 109.47241 * 59.28014 * 18 16 15 45 45 H 0.97001 * 119.99909 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.58725 * 186.60127 * 28 19 16 47 47 H 1.09002 * 109.57976 * 66.18709 * 28 19 16 48 48 H 1.08001 * 120.82198 * 0.04941 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2647 2.0784 1.1948 5 7 2.7046 3.3215 1.2159 6 6 2.9428 3.9953 0.1033 7 8 3.3936 5.2706 0.1722 8 6 2.7258 3.3993 -1.1479 9 6 2.9843 4.1490 -2.3918 10 8 3.3888 5.2944 -2.3384 11 7 2.7721 3.5643 -3.5875 12 6 3.0294 4.3087 -4.8228 13 1 2.7747 5.3582 -4.6749 14 6 2.1770 3.7302 -5.9546 15 6 2.4204 4.5281 -7.2377 16 6 3.8953 4.4111 -7.6349 17 1 4.1251 3.3777 -7.8947 18 6 4.1765 5.3165 -8.8358 19 7 4.7260 4.8294 -6.4975 20 6 5.6825 5.7973 -6.6508 21 1 5.5514 6.5738 -7.3898 22 6 6.8207 5.7801 -5.8564 23 7 7.1374 4.6942 -5.1835 24 14 7.9030 7.2983 -5.7423 25 1 7.5097 8.0985 -4.5548 26 1 9.3235 6.8851 -5.6125 27 1 7.7363 8.1184 -6.9691 28 6 4.5111 4.1893 -5.1926 29 6 2.2651 2.0782 -1.1948 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0827 1.5645 2.1272 36 1 4.3573 5.3466 0.1922 37 1 2.4498 2.6504 -3.6301 38 1 2.4496 2.6876 -6.1180 39 1 1.1231 3.7916 -5.6833 40 1 2.1714 5.5755 -7.0677 41 1 1.7956 4.1303 -8.0374 42 1 5.2291 5.2413 -9.1088 43 1 3.5593 5.0045 -9.6784 44 1 3.9413 6.3485 -8.5757 45 1 7.9330 4.6821 -4.6287 46 1 5.1178 4.6878 -4.4366 47 1 4.7894 3.1370 -5.2516 48 1 2.0908 1.5861 -2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071940956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:22 Heat of formation + Delta-G solvation = -53.378138 kcal Electronic energy + Delta-G solvation = -29476.352574 eV Core-core repulsion = 25530.728764 eV Total energy + Delta-G solvation = -3945.623811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99366 -40.52033 -39.14173 -38.36436 -36.01714 -35.20213 -34.69222 -33.70708 -31.92921 -31.60328 -30.04911 -27.80728 -26.90856 -25.62477 -24.97705 -24.04173 -23.16202 -22.03827 -21.49511 -20.87052 -19.91580 -18.45818 -18.39595 -18.20046 -17.19008 -17.11579 -16.57439 -16.04266 -15.79491 -15.72034 -15.38620 -15.22127 -14.98948 -14.75996 -14.57341 -14.35106 -14.24013 -14.09430 -13.97817 -13.50848 -13.09220 -13.01989 -12.81346 -12.74932 -12.74586 -12.58069 -12.34576 -12.27305 -12.11478 -11.97413 -11.80538 -11.66295 -11.42964 -11.17492 -11.08760 -11.00357 -10.54971 -10.45271 -10.13197 -9.79927 -8.62464 -7.86184 -5.31950 -0.49707 0.00676 1.39695 1.45062 1.50368 1.80412 2.04308 2.46699 2.49707 2.75260 3.30040 3.43493 3.61375 3.69152 3.71539 3.84254 3.95882 4.09094 4.14979 4.24613 4.28578 4.39040 4.51285 4.55746 4.61015 4.69553 4.71208 4.79283 4.84448 4.89124 4.93586 5.00948 5.06573 5.18481 5.19628 5.29345 5.32520 5.34928 5.39098 5.44553 5.52027 5.54851 5.61398 5.70432 5.79067 6.39868 6.44504 6.56329 6.77125 7.15188 7.24851 7.89773 8.38650 9.18911 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003531 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.238060 B = 7928.635344 C = 9334.029768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C -0.140 4.140 4 C 0.147 3.853 5 N -0.526 5.526 6 C 0.337 3.663 7 O -0.484 6.484 8 C -0.211 4.211 9 C 0.552 3.448 10 O -0.565 6.565 11 N -0.701 5.701 12 C 0.132 3.868 13 H 0.049 0.951 14 C -0.107 4.107 15 C -0.118 4.118 16 C 0.154 3.846 17 H 0.024 0.976 18 C -0.130 4.130 19 N -0.604 5.604 20 C -0.250 4.250 21 H 0.074 0.926 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.954 3.046 25 H -0.298 1.298 26 H -0.293 1.293 27 H -0.262 1.262 28 C 0.182 3.818 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.199 0.801 36 H 0.412 0.588 37 H 0.411 0.589 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.244 0.756 46 H 0.040 0.960 47 H 0.000 1.000 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.918 -14.316 7.335 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.142 4.142 4 C -0.011 4.011 5 N -0.245 5.245 6 C 0.158 3.842 7 O -0.293 6.293 8 C -0.218 4.218 9 C 0.339 3.661 10 O -0.444 6.444 11 N -0.353 5.353 12 C 0.026 3.974 13 H 0.067 0.933 14 C -0.145 4.145 15 C -0.158 4.158 16 C 0.049 3.951 17 H 0.042 0.958 18 C -0.188 4.188 19 N -0.328 5.328 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.783 3.217 25 H -0.226 1.226 26 H -0.219 1.219 27 H -0.186 1.186 28 C 0.055 3.945 29 C -0.048 4.048 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.216 0.784 36 H 0.273 0.727 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.895 -12.872 8.153 22.018 hybrid contribution 1.603 0.488 -0.360 1.714 sum -14.293 -12.384 7.793 20.454 Atomic orbital electron populations 1.21794 0.93890 1.02933 1.02047 1.20573 0.96482 0.88802 1.05334 1.21216 1.00602 0.99904 0.92461 1.23348 0.90241 0.87644 0.99881 1.67359 1.15862 1.10351 1.30907 1.19407 0.93078 0.84443 0.87246 1.84643 1.28815 1.20358 1.95457 1.21070 1.10349 0.97130 0.93213 1.18317 0.77563 0.86096 0.84173 1.90830 1.46408 1.19566 1.87589 1.45740 1.67142 1.17748 1.04676 1.21560 0.97333 0.95204 0.83340 0.93260 1.21655 0.99239 1.00172 0.93449 1.21954 0.96607 0.99935 0.97262 1.20812 0.90642 0.95874 0.87809 0.95793 1.21741 1.00868 0.99170 0.96975 1.44330 1.39571 1.44403 1.04474 1.19478 0.96375 1.03085 1.19103 0.90885 1.25756 0.98301 0.98949 1.01628 1.70156 1.26424 1.27265 1.34030 0.85439 0.77983 0.80277 0.77994 1.22593 1.21938 1.18620 1.20740 0.91735 0.94100 0.87970 1.21952 0.91486 0.90436 1.00966 0.90528 0.92661 0.93062 0.89185 0.88347 0.78430 0.72693 0.75166 0.90423 0.89633 0.93112 0.88433 0.94341 0.90223 0.93700 0.94683 0.94098 0.98159 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.07 -0.56 6.08 29.85 0.18 -0.38 16 3 C -0.14 -2.12 5.14 -19.81 -0.10 -2.23 16 4 C 0.15 2.63 10.84 84.71 0.92 3.55 16 5 N -0.53 -14.29 10.37 -307.99 -3.19 -17.48 16 6 C 0.34 10.80 7.77 85.13 0.66 11.46 16 7 O -0.48 -17.22 11.66 -66.50 -0.78 -18.00 16 8 C -0.21 -6.29 5.90 -19.91 -0.12 -6.40 16 9 C 0.55 20.73 7.74 86.69 0.67 21.40 16 10 O -0.56 -27.31 14.86 16.82 0.25 -27.06 16 11 N -0.70 -22.59 5.04 -445.35 -2.24 -24.83 16 12 C 0.13 5.10 2.60 45.07 0.12 5.22 16 13 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 14 C -0.11 -3.06 5.35 30.62 0.16 -2.90 16 15 C -0.12 -3.60 5.37 30.67 0.16 -3.44 16 16 C 0.15 6.02 3.50 44.97 0.16 6.18 16 17 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 18 C -0.13 -4.65 7.95 71.98 0.57 -4.08 16 19 N -0.60 -30.46 2.99 -675.23 -2.02 -32.48 16 20 C -0.25 -14.05 8.58 84.03 0.72 -13.33 16 21 H 0.07 3.98 6.23 -2.91 -0.02 3.96 16 22 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 23 N -0.93 -57.71 11.21 21.65 0.24 -57.46 16 24 Si 0.95 47.84 29.58 68.60 2.03 49.87 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 26 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 27 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.18 9.03 4.86 86.36 0.42 9.45 16 29 C -0.02 -0.44 9.31 22.72 0.21 -0.23 16 30 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.54 8.09 -2.39 -0.02 0.52 16 34 H 0.10 0.43 8.09 -2.39 -0.02 0.41 16 35 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.41 12.28 9.06 -74.06 -0.67 11.61 16 37 H 0.41 9.36 6.70 -92.71 -0.62 8.74 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 43 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.04 1.66 7.44 -2.39 -0.02 1.64 16 45 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.04 2.46 6.12 -2.39 -0.01 2.45 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.17 2.20 6.52 -2.91 -0.02 2.18 16 Total: -1.00 -82.80 384.10 -0.14 -82.94 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.30 Total: 23.19 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.87 Total: 21.31 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -7.21 Total: -132.26 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.53 Total: -45.06 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -82.80 -0.14 -82.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071940956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.560 kcal (2) G-P(sol) polarization free energy of solvation -82.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds