Wall clock time and date at job start Tue Mar 31 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47135 * 2 1 4 4 C 1.38178 * 120.49856 * 265.02684 * 3 2 1 5 5 N 1.31797 * 120.89171 * 179.97438 * 4 3 2 6 6 C 1.31827 * 122.05023 * 0.02651 * 5 4 3 7 7 C 1.38131 * 120.89888 * 359.73261 * 6 5 4 8 8 C 1.39798 * 120.49790 * 85.00148 * 3 2 1 9 9 C 1.48140 * 120.92247 * 0.02562 * 8 3 2 10 10 O 1.21510 * 120.00339 * 359.97438 * 9 8 3 11 11 N 1.34782 * 119.99969 * 180.02562 * 9 8 3 12 12 C 1.46500 * 120.00136 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47218 * 179.97438 * 12 11 9 14 14 H 1.09008 * 108.56730 * 62.05806 * 13 12 11 15 15 C 1.46915 * 108.62205 * 179.97438 * 13 12 11 16 16 N 1.50117 * 106.78054 * 177.92060 * 15 13 12 17 17 C 1.36929 * 120.63589 * 111.34761 * 16 15 13 18 18 H 1.07996 * 120.00100 * 155.99961 * 17 16 15 19 19 C 1.38814 * 120.00125 * 336.00075 * 17 16 15 20 20 N 1.31622 * 119.99699 * 340.27292 * 19 17 16 21 21 Si 1.86800 * 120.00267 * 160.26825 * 19 17 16 22 22 H 1.48499 * 109.47322 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.46880 * 300.00326 * 21 19 17 24 24 H 1.48507 * 109.46875 * 59.99950 * 21 19 17 25 25 C 1.43427 * 118.72708 * 291.62358 * 16 15 13 26 26 C 1.54787 * 116.57743 * 89.21991 * 25 16 15 27 27 C 1.55188 * 108.80074 * 319.48687 * 26 25 16 28 28 O 1.39642 * 110.57162 * 322.08099 * 27 26 25 29 29 H 1.08994 * 109.47623 * 60.00079 * 1 2 3 30 30 H 1.09011 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47305 * 299.99424 * 1 2 3 32 32 H 1.09009 * 109.46797 * 240.00392 * 2 1 3 33 33 H 1.09002 * 109.47749 * 120.00584 * 2 1 3 34 34 H 1.07994 * 119.55281 * 359.97160 * 4 3 2 35 35 H 1.07999 * 119.55112 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.49673 * 180.28890 * 7 6 5 37 37 H 0.96998 * 119.99895 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.47057 * 59.99452 * 12 11 9 39 39 H 1.08998 * 109.46914 * 299.99895 * 12 11 9 40 40 H 1.09005 * 109.98585 * 58.60629 * 15 13 12 41 41 H 1.09001 * 109.99701 * 297.24046 * 15 13 12 42 42 H 0.97005 * 119.99480 * 180.02562 * 20 19 17 43 43 H 1.09002 * 108.12268 * 210.83881 * 25 16 15 44 44 H 1.09000 * 108.12645 * 327.32207 * 25 16 15 45 45 H 1.09006 * 109.66283 * 199.66133 * 26 25 16 46 46 H 1.08998 * 109.54928 * 79.25119 * 26 25 16 47 47 H 1.09004 * 109.26188 * 201.79339 * 27 26 25 48 48 H 1.09000 * 109.25505 * 82.35679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3633 2.0476 -1.1861 5 7 2.8029 3.2901 -1.1952 6 6 2.9477 3.9890 -0.0868 7 6 2.6356 3.4420 1.1426 8 6 2.1698 2.1247 1.2000 9 6 1.8273 1.4942 2.4960 10 8 1.4199 0.3498 2.5261 11 7 1.9665 2.1902 3.6417 12 6 1.6272 1.5669 4.9234 13 6 1.8746 2.5642 6.0569 14 1 1.2200 3.4237 5.9121 15 6 1.5283 1.9210 7.3316 16 7 1.8343 2.9138 8.4152 17 6 0.8248 3.4913 9.1378 18 1 1.0218 3.8795 10.1261 19 6 -0.4520 3.5779 8.6000 20 7 -0.6264 3.4775 7.2993 21 14 -1.9227 3.8367 9.7223 22 1 -3.1631 3.8935 8.9078 23 1 -2.0147 2.7101 10.6855 24 1 -1.7595 5.1117 10.4660 25 6 3.2042 3.2502 8.6751 26 6 3.7929 4.4308 7.8654 27 6 3.2813 4.3388 6.4032 28 8 3.2257 3.0074 5.9857 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2606 1.5121 -2.1183 35 1 3.3109 5.0046 -0.1412 36 1 2.7523 4.0220 2.0460 37 1 2.2913 3.1038 3.6177 38 1 2.2490 0.6844 5.0741 39 1 0.5771 1.2748 4.9186 40 1 2.1282 1.0214 7.4701 41 1 0.4680 1.6688 7.3459 42 1 -1.5186 3.5383 6.9235 43 1 3.2991 3.4911 9.7339 44 1 3.8133 2.3682 8.4777 45 1 4.8815 4.3758 7.8755 46 1 3.4691 5.3733 8.3070 47 1 3.9565 4.8924 5.7505 48 1 2.2849 4.7763 6.3428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073671237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:22 Heat of formation + Delta-G solvation = -14.757631 kcal Electronic energy + Delta-G solvation = -29671.697200 eV Core-core repulsion = 25727.748100 eV Total energy + Delta-G solvation = -3943.949100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.86835 -39.37684 -38.58909 -35.28338 -34.95881 -34.15571 -32.84331 -31.97104 -31.08434 -29.85309 -28.69496 -26.08127 -25.39035 -24.43557 -24.23148 -22.65228 -21.49363 -20.88989 -20.46820 -19.64801 -18.09712 -17.17265 -16.77219 -16.09649 -15.63876 -15.59962 -15.29973 -15.04338 -14.91152 -14.45530 -14.19727 -14.04405 -13.96445 -13.85528 -13.66443 -13.13638 -13.00525 -12.71172 -12.59711 -12.34344 -12.10498 -12.01045 -11.47738 -11.36622 -11.29294 -10.98936 -10.88671 -10.79705 -10.54162 -10.25730 -10.16269 -10.00585 -9.94772 -9.73595 -9.58662 -9.31491 -9.13241 -8.88065 -8.77058 -8.55719 -6.88370 -5.97692 -3.35834 0.61534 0.90056 2.94186 3.24348 3.30661 3.37517 3.39584 3.71437 4.21611 4.39226 4.51167 4.54998 4.63893 4.66899 4.83899 5.12601 5.18164 5.22944 5.29224 5.41536 5.45011 5.60882 5.67442 5.72553 5.75094 5.76866 5.85982 5.90501 5.99394 6.06328 6.23170 6.25860 6.33134 6.34658 6.40953 6.44444 6.51643 6.60749 6.63911 6.75864 6.83426 6.90378 7.04652 7.25848 7.64062 7.67153 7.71984 8.04533 8.26590 8.29749 9.01759 9.69990 10.24034 11.11474 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.003154 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.471001 B = 8874.848623 C = 9667.144378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.075 4.075 4 C 0.092 3.908 5 N -0.470 5.470 6 C 0.086 3.914 7 C -0.136 4.136 8 C -0.086 4.086 9 C 0.551 3.449 10 O -0.528 6.528 11 N -0.703 5.703 12 C 0.121 3.879 13 C 0.060 3.940 14 H 0.107 0.893 15 C 0.143 3.857 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.908 5.908 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.160 3.840 26 C -0.172 4.172 27 C 0.066 3.934 28 O -0.370 6.370 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.020 0.980 41 H 0.105 0.895 42 H 0.256 0.744 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -1.085 -13.240 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.066 4.066 5 N -0.178 5.178 6 C -0.071 4.071 7 C -0.157 4.157 8 C -0.097 4.097 9 C 0.337 3.663 10 O -0.407 6.407 11 N -0.353 5.353 12 C -0.003 4.003 13 C 0.001 3.999 14 H 0.125 0.875 15 C 0.018 3.982 16 N -0.307 5.307 17 C -0.379 4.379 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.031 3.969 26 C -0.213 4.213 27 C -0.012 4.012 28 O -0.289 6.289 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.904 -1.633 -14.066 15.342 hybrid contribution -0.945 0.718 1.435 1.862 sum 4.959 -0.915 -12.630 13.600 Atomic orbital electron populations 1.21585 0.94152 1.01897 1.01538 1.20802 0.96876 0.91095 1.04313 1.21139 0.96174 0.98025 0.92419 1.22701 0.95726 0.90832 0.97324 1.67535 1.11119 1.07539 1.31644 1.22698 0.97047 1.00001 0.87315 1.22404 0.98229 0.94757 1.00285 1.20344 1.00545 0.94563 0.94244 1.18133 0.78703 0.85971 0.83514 1.90689 1.45991 1.17190 1.86788 1.45867 1.65818 1.17392 1.06269 1.21782 1.01051 0.96559 0.80883 1.22222 0.82959 0.99847 0.94832 0.87549 1.20745 1.01872 0.89642 0.85906 1.44117 1.00889 1.45254 1.40461 1.19230 0.88458 1.33925 0.96335 0.91292 1.24888 0.98567 1.00627 0.95396 1.69855 1.21705 1.54489 1.09313 0.86332 0.82042 0.78155 0.80035 1.21622 1.21051 1.21008 1.20265 0.86269 0.94183 0.96154 1.23491 0.98863 1.01630 0.97300 1.22364 1.00807 0.83706 0.94294 1.87510 1.28091 1.27398 1.85877 0.93562 0.92269 0.92156 0.91590 0.87321 0.82355 0.82211 0.84248 0.76474 0.91695 0.90044 0.96204 0.87749 0.93392 0.94914 0.95039 0.93106 0.92455 0.93063 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.57 37.15 0.36 -1.17 16 2 C -0.09 -1.06 5.34 -27.89 -0.15 -1.21 16 3 C -0.07 -0.90 5.19 -104.06 -0.54 -1.44 16 4 C 0.09 1.00 10.84 -17.59 -0.19 0.81 16 5 N -0.47 -5.49 10.33 -13.30 -0.14 -5.63 16 6 C 0.09 0.89 11.17 -17.59 -0.20 0.69 16 7 C -0.14 -1.49 9.62 -39.02 -0.38 -1.87 16 8 C -0.09 -1.12 5.91 -104.65 -0.62 -1.74 16 9 C 0.55 8.43 7.77 -12.19 -0.09 8.33 16 10 O -0.53 -9.16 12.30 5.36 0.07 -9.10 16 11 N -0.70 -10.69 5.36 -61.16 -0.33 -11.02 16 12 C 0.12 2.11 5.26 -4.04 -0.02 2.09 16 13 C 0.06 1.16 2.01 -29.65 -0.06 1.10 16 14 H 0.11 2.33 5.25 -51.92 -0.27 2.06 16 15 C 0.14 3.13 4.71 -4.93 -0.02 3.11 16 16 N -0.59 -13.69 2.62 -174.85 -0.46 -14.15 16 17 C -0.25 -6.37 9.62 -15.06 -0.14 -6.52 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.91 -23.11 9.58 55.49 0.53 -22.57 16 21 Si 0.90 20.51 29.60 -169.99 -5.03 15.48 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.16 3.29 5.28 -4.73 -0.02 3.26 16 26 C -0.17 -3.09 6.74 -24.63 -0.17 -3.25 16 27 C 0.07 1.17 6.38 38.32 0.24 1.42 16 28 O -0.37 -6.87 9.34 -31.94 -0.30 -7.17 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.06 0.82 7.26 -51.93 -0.38 0.45 16 32 H 0.07 0.59 8.06 -51.92 -0.42 0.17 16 33 H 0.11 1.48 5.67 -51.93 -0.29 1.19 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.27 6.54 -52.49 -0.34 0.93 16 37 H 0.40 5.47 6.33 -40.82 -0.26 5.21 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 2.51 6.01 -51.93 -0.31 2.20 16 42 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 43 H 0.03 0.66 7.96 -51.93 -0.41 0.25 16 44 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.27 6.66 -51.93 -0.35 0.92 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -27.89 375.97 -9.31 -37.19 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.23 Total: 7.70 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.09 Total: 3.60 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.39 Total: -53.38 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.23 Total: -16.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.89 -9.31 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073671237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds