Wall clock time and date at job start Tue Mar 31 2020 17:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47050 * 2 1 4 4 O 1.33484 * 126.82549 * 269.97656 * 3 2 1 5 5 N 1.20656 * 113.15777 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29817 * 359.68477 * 5 4 3 7 7 C 1.50704 * 127.33814 * 180.30055 * 6 5 4 8 8 C 1.37353 * 126.83005 * 89.99206 * 3 2 1 9 9 C 1.47406 * 128.56512 * 359.97438 * 8 3 2 10 10 O 1.21611 * 119.99780 * 89.99658 * 9 8 3 11 11 N 1.34771 * 119.99892 * 269.99635 * 9 8 3 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 H 1.08996 * 112.88210 * 25.33014 * 12 11 9 14 14 C 1.53953 * 113.65706 * 253.98660 * 12 11 9 15 15 C 1.54152 * 87.22225 * 220.82134 * 14 12 11 16 16 H 1.08996 * 113.79916 * 139.16198 * 15 14 12 17 17 N 1.46496 * 113.57780 * 270.18324 * 15 14 12 18 18 C 1.36937 * 120.00151 * 252.18187 * 17 15 14 19 19 H 1.08005 * 119.99803 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00399 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99715 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00228 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47372 * 119.99625 * 22 20 18 25 25 H 1.48496 * 109.47109 * 240.00069 * 22 20 18 26 26 C 1.52900 * 113.66354 * 156.67807 * 12 11 9 27 27 C 1.52910 * 121.14004 * 13.64898 * 26 12 11 28 28 C 1.53942 * 86.78436 * 209.37931 * 27 26 12 29 29 C 1.52911 * 121.13959 * 265.08736 * 26 12 11 30 30 H 1.08993 * 109.47799 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46685 * 60.00887 * 1 2 3 32 32 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47526 * 239.99526 * 2 1 3 34 34 H 1.09004 * 109.46485 * 119.99623 * 2 1 3 35 35 H 1.09002 * 109.47133 * 270.19786 * 7 6 5 36 36 H 1.09003 * 109.47207 * 30.18992 * 7 6 5 37 37 H 1.08997 * 109.47678 * 150.19827 * 7 6 5 38 38 H 0.96995 * 120.00304 * 359.97438 * 11 9 8 39 39 H 1.09000 * 113.58101 * 335.39459 * 14 12 11 40 40 H 1.09001 * 113.57639 * 106.19349 * 14 12 11 41 41 H 0.97001 * 120.00003 * 72.18948 * 17 15 14 42 42 H 0.97000 * 119.99734 * 180.02562 * 21 20 18 43 43 H 1.08994 * 113.66190 * 323.85529 * 27 26 12 44 44 H 1.09005 * 113.66128 * 94.91010 * 27 26 12 45 45 H 1.09003 * 113.58215 * 270.12844 * 28 27 26 46 46 H 1.09005 * 113.65167 * 139.34347 * 28 27 26 47 47 H 1.09005 * 113.65915 * 265.09399 * 29 26 12 48 48 H 1.09006 * 113.65921 * 36.05264 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2995 2.1750 -1.0685 5 7 2.6906 3.2803 -0.7834 6 6 2.7493 3.4664 0.5020 7 6 3.1823 4.7153 1.2259 8 6 2.3067 2.1972 1.0994 9 6 2.1821 1.8470 2.5258 10 8 3.1235 1.3511 3.1146 11 7 1.0249 2.0764 3.1774 12 6 0.9012 1.7289 4.5953 13 1 1.8598 1.7176 5.1141 14 6 0.0450 0.4754 4.8517 15 6 -0.5594 1.2261 6.0548 16 1 -1.6342 1.0838 6.1672 17 7 0.1765 1.0191 7.3044 18 6 -0.3618 0.2426 8.2956 19 1 -1.3289 -0.2176 8.1558 20 6 0.3352 0.0469 9.4799 21 7 1.5140 0.6074 9.6500 22 14 -0.3989 -1.0130 10.8316 23 1 -1.7232 -1.5241 10.3957 24 1 0.5062 -2.1567 11.1105 25 1 -0.5636 -0.2002 12.0635 26 6 -0.1841 2.5181 5.3282 27 6 -1.2305 3.3253 4.5591 28 6 -1.2767 4.2637 5.7785 29 6 0.1522 3.7922 6.1038 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.2573 4.6789 1.4021 36 1 2.9431 5.5885 0.6189 37 1 2.6598 4.7819 2.1801 38 1 0.2741 2.4723 2.7079 39 1 -0.6750 0.2696 4.0596 40 1 0.6287 -0.4014 5.1322 41 1 1.0452 1.4323 7.4299 42 1 2.0012 0.4703 10.4775 43 1 -0.8419 3.7985 3.6573 44 1 -2.1612 2.7844 4.3879 45 1 -2.0134 3.9708 6.5265 46 1 -1.3380 5.3198 5.5155 47 1 0.3262 3.6243 7.1667 48 1 0.9307 4.3959 5.6371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078806823.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:04 Heat of formation + Delta-G solvation = 70.254833 kcal Electronic energy + Delta-G solvation = -29564.397033 eV Core-core repulsion = 25624.134350 eV Total energy + Delta-G solvation = -3940.262683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.05946 -40.63183 -38.89836 -35.12511 -35.05914 -34.72061 -34.09315 -32.37883 -30.59688 -29.64453 -28.99310 -25.70507 -25.55163 -24.26418 -24.21714 -23.77803 -22.43910 -20.82346 -20.40990 -19.94942 -18.35731 -17.93832 -17.54755 -17.03680 -16.55430 -16.08372 -15.36974 -15.17164 -14.98682 -14.59360 -14.37683 -14.02767 -13.85384 -13.63926 -13.43583 -13.19122 -13.08485 -12.80726 -12.71857 -12.57161 -12.22760 -12.00522 -11.90854 -11.80232 -11.68873 -11.44205 -11.15662 -10.93906 -10.88081 -10.78572 -10.28462 -10.15667 -10.08283 -10.00841 -9.89533 -9.62949 -9.60583 -9.51084 -8.91064 -8.71121 -7.03798 -5.82533 -3.12542 1.10958 1.71874 2.40024 2.63650 3.27706 3.40443 3.46098 3.48547 3.91787 4.01911 4.47761 4.59897 4.61722 4.72104 4.79203 4.84624 4.88893 4.94355 5.00723 5.14209 5.20813 5.23959 5.28414 5.38046 5.39091 5.46825 5.49763 5.60945 5.62073 5.75619 5.80049 5.82556 5.88238 5.90215 5.96504 5.99443 6.08188 6.15064 6.37310 6.52514 6.57273 6.65098 6.74075 6.81896 7.01625 7.54427 7.66816 8.01809 8.20171 8.35373 9.46793 10.02279 10.36647 11.39419 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.003038 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.661493 B = 9215.327717 C = 9673.895653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.020 3.980 4 O 0.095 5.905 5 N -0.358 5.358 6 C 0.054 3.946 7 C -0.078 4.078 8 C -0.246 4.246 9 C 0.594 3.406 10 O -0.521 6.521 11 N -0.701 5.701 12 C 0.137 3.863 13 H 0.115 0.885 14 C -0.181 4.181 15 C 0.198 3.802 16 H 0.069 0.931 17 N -0.700 5.700 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.126 4.126 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 5.666 -20.456 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.044 4.044 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.253 4.253 9 C 0.378 3.622 10 O -0.397 6.397 11 N -0.351 5.351 12 C 0.034 3.966 13 H 0.133 0.867 14 C -0.223 4.223 15 C 0.084 3.916 16 H 0.087 0.913 17 N -0.338 5.338 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.125 4.125 27 C -0.154 4.154 28 C -0.170 4.170 29 C -0.163 4.163 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.222 0.778 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.872 5.935 -20.905 21.920 hybrid contribution -0.299 -0.507 1.196 1.333 sum -3.171 5.429 -19.709 20.687 Atomic orbital electron populations 1.21790 0.92753 1.03340 1.02840 1.20286 0.97160 0.85799 1.05458 1.24675 0.98323 0.96267 0.85102 1.84513 1.61590 1.17498 1.33014 1.73605 1.17571 0.98712 1.16607 1.24760 1.00456 0.96588 0.89012 1.20231 1.02664 0.91065 0.99574 1.22063 1.12500 0.95296 0.95479 1.16912 0.83226 0.78350 0.83740 1.90866 1.38521 1.42878 1.67419 1.46062 1.13939 1.63021 1.12112 1.22520 0.99260 0.96349 0.78477 0.86709 1.24332 0.99498 0.97942 1.00557 1.20664 0.95599 0.89554 0.85781 0.91280 1.42119 1.21163 1.58395 1.12086 1.19286 1.01728 1.22593 0.93971 0.90922 1.24764 0.96789 1.00768 0.98245 1.69677 1.13473 1.47872 1.26531 0.86119 0.78151 0.79790 0.82099 1.20501 1.21810 1.21850 1.23615 0.95988 0.95378 0.97568 1.22530 0.98302 0.97648 0.96899 1.22733 0.98353 0.98111 0.97846 1.22635 0.95964 0.95684 1.02028 0.91893 0.91914 0.90724 0.88690 0.88039 0.89537 0.89958 0.89714 0.76802 0.91192 0.90783 0.77844 0.93405 0.90839 0.91361 0.89995 0.92263 0.89815 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.90 37.16 0.37 -0.64 16 2 C -0.05 -0.39 6.38 -27.88 -0.18 -0.57 16 3 C 0.02 0.21 6.80 -34.63 -0.24 -0.02 16 4 O 0.10 1.10 11.06 18.67 0.21 1.31 16 5 N -0.36 -4.50 12.01 34.78 0.42 -4.08 16 6 C 0.05 0.65 7.59 -79.77 -0.61 0.05 16 7 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16 8 C -0.25 -3.10 6.24 -102.89 -0.64 -3.74 16 9 C 0.59 8.71 7.60 -12.53 -0.10 8.61 16 10 O -0.52 -9.98 16.73 5.27 0.09 -9.89 16 11 N -0.70 -9.00 5.27 -54.45 -0.29 -9.28 16 12 C 0.14 2.16 4.00 -67.48 -0.27 1.89 16 13 H 0.12 2.21 7.50 -51.93 -0.39 1.82 16 14 C -0.18 -2.99 7.70 -25.64 -0.20 -3.19 16 15 C 0.20 3.64 4.37 -67.38 -0.29 3.34 16 16 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 17 N -0.70 -16.57 4.85 -52.89 -0.26 -16.83 16 18 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 C -0.12 -1.83 0.92 -154.71 -0.14 -1.97 16 27 C -0.12 -1.35 7.15 -26.29 -0.19 -1.54 16 28 C -0.13 -1.71 8.08 -25.76 -0.21 -1.91 16 29 C -0.13 -1.91 7.62 -26.28 -0.20 -2.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.40 4.12 6.96 -40.82 -0.28 3.84 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.39 9.91 7.62 -40.82 -0.31 9.60 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -31.68 399.02 -8.50 -40.18 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.63 Total: 11.57 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.76 Total: -9.17 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.60 Total: -56.85 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.29 Total: -8.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.68 -8.50 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078806823.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.433 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds