Wall clock time and date at job start Tue Mar 31 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00201 * 2 1 4 4 H 1.08997 * 110.88615 * 32.42759 * 3 2 1 5 5 C 1.54909 * 111.00131 * 268.54168 * 3 2 1 6 6 N 1.47427 * 104.83235 * 204.87770 * 5 3 2 7 7 C 1.36936 * 125.65168 * 204.16769 * 6 5 3 8 8 H 1.07993 * 120.00344 * 161.47821 * 7 6 5 9 9 C 1.38813 * 119.99624 * 341.47522 * 7 6 5 10 10 N 1.31621 * 119.99597 * 157.63750 * 9 7 6 11 11 Si 1.86794 * 120.00222 * 337.63914 * 9 7 6 12 12 H 1.48507 * 109.47423 * 84.53407 * 11 9 7 13 13 H 1.48506 * 109.47201 * 204.53637 * 11 9 7 14 14 H 1.48505 * 109.47132 * 324.53466 * 11 9 7 15 15 C 1.47031 * 108.70173 * 24.13029 * 6 5 3 16 16 C 1.54327 * 107.39979 * 358.86367 * 15 6 5 17 17 H 1.09002 * 110.71930 * 96.24567 * 16 15 6 18 18 N 1.46496 * 110.71613 * 219.51969 * 16 15 6 19 19 C 1.34779 * 120.00086 * 273.54505 * 18 16 15 20 20 O 1.21554 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.47841 * 120.00102 * 180.02562 * 19 18 16 22 22 C 1.40026 * 120.55881 * 179.72666 * 21 19 18 23 23 C 1.38361 * 118.28646 * 179.73206 * 22 21 19 24 24 C 1.38351 * 119.30070 * 0.56082 * 23 22 21 25 25 C 1.50704 * 119.45749 * 179.72281 * 24 23 22 26 26 C 1.53000 * 109.47086 * 274.97342 * 25 24 23 27 27 C 1.52998 * 109.47380 * 34.97597 * 25 24 23 28 28 N 1.31933 * 121.08350 * 359.69456 * 24 23 22 29 29 C 1.31692 * 121.87749 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47199 * 300.00487 * 1 2 3 32 32 H 1.09004 * 109.46667 * 60.00108 * 1 2 3 33 33 H 1.09001 * 110.36451 * 86.04114 * 5 3 2 34 34 H 1.08997 * 110.37075 * 323.71597 * 5 3 2 35 35 H 0.97002 * 119.99755 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.87811 * 118.35756 * 15 6 5 37 37 H 1.09000 * 109.88498 * 239.36773 * 15 6 5 38 38 H 0.97001 * 120.00035 * 93.55151 * 18 16 15 39 39 H 1.07996 * 120.85612 * 359.97438 * 22 21 19 40 40 H 1.07995 * 120.34878 * 180.25995 * 23 22 21 41 41 H 1.09003 * 109.46974 * 154.97168 * 25 24 23 42 42 H 1.08998 * 109.46485 * 59.99928 * 26 25 24 43 43 H 1.09002 * 109.47085 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47308 * 300.00158 * 26 25 24 45 45 H 1.08998 * 109.47045 * 300.00595 * 27 25 24 46 46 H 1.09009 * 109.47191 * 59.99864 * 27 25 24 47 47 H 1.08993 * 109.47539 * 179.97438 * 27 25 24 48 48 H 1.07995 * 119.71459 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7976 -1.4457 6 7 3.3606 2.7812 -1.3195 7 6 3.6220 3.8002 -2.1961 8 1 4.2317 4.6360 -1.8864 9 6 3.1031 3.7588 -3.4829 10 7 2.9619 4.8716 -4.1716 11 14 2.6052 2.1241 -4.2372 12 1 1.2240 1.7827 -3.8117 13 1 2.6562 2.2261 -5.7179 14 1 3.5398 1.0637 -3.7817 15 6 4.1211 2.4873 -0.0959 16 6 3.4497 1.2760 0.5850 17 1 3.9572 0.3505 0.3131 18 7 3.4250 1.4472 2.0397 19 6 4.4817 1.0609 2.7818 20 8 5.4554 0.5709 2.2440 21 6 4.4565 1.2332 4.2499 22 6 5.5455 0.8307 5.0327 23 6 5.4742 1.0191 6.4016 24 6 4.3355 1.5827 6.9491 25 6 4.2515 1.7837 8.4403 26 6 3.7592 0.4948 9.1017 27 6 5.6358 2.1402 8.9857 28 7 3.3222 1.9476 6.1871 29 6 3.3448 1.7940 4.8794 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.3760 2.2723 -1.8509 34 1 2.5796 0.9668 -2.0795 35 1 2.5989 4.8427 -5.0707 36 1 5.1529 2.2448 -0.3500 37 1 4.0965 3.3486 0.5718 38 1 2.6480 1.8386 2.4689 39 1 6.4202 0.3884 4.5793 40 1 6.2968 0.7247 7.0365 41 1 3.5553 2.5933 8.6592 42 1 4.4555 -0.3147 8.8828 43 1 3.6980 0.6403 10.1802 44 1 2.7729 0.2408 8.7132 45 1 6.3321 1.3306 8.7668 46 1 5.9866 3.0584 8.5145 47 1 5.5750 2.2860 10.0641 48 1 2.4954 2.1048 4.2892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081798737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:15 Heat of formation + Delta-G solvation = -15.762545 kcal Electronic energy + Delta-G solvation = -28617.481803 eV Core-core repulsion = 24673.489126 eV Total energy + Delta-G solvation = -3943.992676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99172 -39.65706 -38.37162 -36.26381 -35.90559 -34.33937 -32.80701 -32.11368 -30.80922 -29.12746 -27.83950 -27.62775 -26.38470 -25.27551 -24.07181 -23.55672 -21.64700 -21.32243 -20.56376 -20.04931 -18.34835 -17.24510 -16.99703 -16.55382 -16.31588 -15.95971 -15.40241 -15.14057 -14.94324 -14.73416 -14.56955 -14.33173 -14.18076 -14.11546 -13.61659 -13.35329 -13.25442 -13.04910 -12.92488 -12.82706 -12.47498 -12.15528 -12.05650 -11.67631 -11.61331 -11.53335 -11.39313 -11.35949 -11.21178 -10.72939 -10.48813 -10.31131 -10.18113 -10.09152 -9.66971 -9.53952 -9.40804 -9.33021 -8.99821 -8.68265 -7.13168 -5.99296 -3.31436 0.37612 0.92921 2.73664 3.00484 3.30961 3.47053 3.51348 3.59087 3.71571 3.77310 4.23836 4.48239 4.50725 4.53015 4.64541 4.67379 4.75602 4.79872 4.82929 5.07164 5.13061 5.13699 5.20485 5.26060 5.27894 5.34780 5.37900 5.39811 5.44501 5.50347 5.53062 5.65972 5.70317 5.74671 5.80676 5.81210 5.84108 5.89651 6.21414 6.25620 6.33987 6.45072 6.56185 6.70446 7.29914 7.43138 7.56908 7.62284 8.14388 8.25841 8.76556 9.62503 10.07302 11.16251 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002536 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.355308 B =11038.191267 C =11606.950085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.068 3.932 4 H 0.078 0.922 5 C 0.096 3.904 6 N -0.604 5.604 7 C -0.243 4.243 8 H 0.095 0.905 9 C 0.024 3.976 10 N -0.905 5.905 11 Si 0.880 3.120 12 H -0.286 1.286 13 H -0.300 1.300 14 H -0.274 1.274 15 C 0.129 3.871 16 C 0.139 3.861 17 H 0.107 0.893 18 N -0.709 5.709 19 C 0.564 3.436 20 O -0.530 6.530 21 C -0.186 4.186 22 C -0.014 4.014 23 C -0.178 4.178 24 C 0.154 3.846 25 C -0.050 4.050 26 C -0.141 4.141 27 C -0.149 4.149 28 N -0.486 5.486 29 C 0.139 3.861 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.398 0.602 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 -9.088 26.042 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.008 3.992 4 H 0.096 0.904 5 C -0.030 4.030 6 N -0.332 5.332 7 C -0.370 4.370 8 H 0.113 0.887 9 C -0.175 4.175 10 N -0.549 5.549 11 Si 0.710 3.290 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.199 1.199 15 C 0.003 3.997 16 C 0.035 3.965 17 H 0.125 0.875 18 N -0.360 5.360 19 C 0.350 3.650 20 O -0.406 6.406 21 C -0.191 4.191 22 C -0.040 4.040 23 C -0.197 4.197 24 C 0.017 3.983 25 C -0.069 4.069 26 C -0.199 4.199 27 C -0.207 4.207 28 N -0.194 5.194 29 C -0.019 4.019 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.233 0.767 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.922 -9.088 25.807 27.376 hybrid contribution -0.202 -0.810 -0.957 1.270 sum -1.124 -9.898 24.850 26.772 Atomic orbital electron populations 1.22779 0.81167 1.02476 1.00176 1.87891 1.19592 1.27189 1.94993 1.23695 0.93192 0.84356 0.97939 0.90390 1.22369 0.93427 0.93407 0.93788 1.44598 1.29483 1.33734 1.25406 1.18632 1.31416 0.95910 0.91023 0.88706 1.25004 0.99435 0.96813 0.96255 1.69836 1.47167 1.25451 1.12409 0.87030 0.78408 0.85769 0.77767 1.21287 1.22812 1.19931 1.21706 0.95419 0.93690 0.88913 1.22162 0.95625 1.00873 0.77886 0.87474 1.45842 1.19087 1.63479 1.07632 1.17988 0.83021 0.78123 0.85857 1.90800 1.32807 1.43913 1.73129 1.21029 0.97648 1.05810 0.94653 1.21758 0.97275 0.92087 0.92913 1.21994 1.00001 1.02406 0.95342 1.21468 0.88999 0.91539 0.96292 1.20118 0.98938 0.99810 0.88040 1.21807 1.01595 0.96061 1.00463 1.21945 0.95455 1.01970 1.01304 1.67509 1.28491 1.17643 1.05753 1.22953 0.96080 0.92323 0.90590 0.89802 0.94137 0.93723 0.91688 0.94211 0.92597 0.93725 0.94128 0.76717 0.83366 0.83932 0.88943 0.92392 0.91675 0.92181 0.92003 0.92162 0.91627 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.89 101.05 1.10 1.48 16 2 O -0.38 -6.08 10.52 -35.23 -0.37 -6.46 16 3 C 0.07 1.14 3.11 -24.45 -0.08 1.07 16 4 H 0.08 1.16 7.76 -51.93 -0.40 0.75 16 5 C 0.10 2.09 4.43 -2.53 -0.01 2.08 16 6 N -0.60 -14.60 3.21 -170.07 -0.55 -15.15 16 7 C -0.24 -6.87 10.57 -15.06 -0.16 -7.03 16 8 H 0.10 2.83 8.06 -52.49 -0.42 2.41 16 9 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16 10 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 11 Si 0.88 22.64 24.27 -169.99 -4.13 18.52 16 12 H -0.29 -6.99 6.49 56.52 0.37 -6.63 16 13 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 14 H -0.27 -7.07 6.66 56.52 0.38 -6.69 16 15 C 0.13 2.64 6.98 -3.06 -0.02 2.62 16 16 C 0.14 2.39 2.99 -65.96 -0.20 2.20 16 17 H 0.11 2.02 7.70 -51.93 -0.40 1.62 16 18 N -0.71 -9.74 5.09 -52.84 -0.27 -10.01 16 19 C 0.56 8.23 7.78 -12.33 -0.10 8.13 16 20 O -0.53 -9.60 16.15 5.32 0.09 -9.51 16 21 C -0.19 -2.20 5.89 -104.82 -0.62 -2.82 16 22 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 23 C -0.18 -1.53 9.16 -39.49 -0.36 -1.89 16 24 C 0.15 1.43 5.79 -82.51 -0.48 0.95 16 25 C -0.05 -0.34 3.23 -91.77 -0.30 -0.63 16 26 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 27 C -0.15 -0.76 8.61 37.16 0.32 -0.44 16 28 N -0.49 -5.26 10.25 -9.13 -0.09 -5.36 16 29 C 0.14 1.46 10.71 -17.13 -0.18 1.28 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.47 6.63 -51.93 -0.34 1.12 16 34 H 0.04 0.93 5.58 -51.93 -0.29 0.64 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.40 4.25 6.59 -40.82 -0.27 3.98 16 39 H 0.15 1.50 7.74 -52.49 -0.41 1.10 16 40 H 0.14 0.85 6.29 -52.49 -0.33 0.52 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.27 6.48 -51.93 -0.34 -0.07 16 46 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.16 1.29 6.42 -52.49 -0.34 0.96 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -34.31 385.15 -7.32 -41.64 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.38 Total: 0.89 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.21 Total: 6.57 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.13 Total: -57.46 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.28 Total: -15.96 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.31 -7.32 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081798737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.874 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds