Wall clock time and date at job start Tue Mar 31 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00201 * 2 1 4 4 H 1.08997 * 110.88615 * 32.42759 * 3 2 1 5 5 C 1.54909 * 111.00131 * 268.54168 * 3 2 1 6 6 N 1.47427 * 104.83235 * 204.87770 * 5 3 2 7 7 C 1.36936 * 125.65168 * 204.16769 * 6 5 3 8 8 H 1.07993 * 120.00344 * 161.47821 * 7 6 5 9 9 C 1.38813 * 119.99624 * 341.47522 * 7 6 5 10 10 N 1.31621 * 119.99597 * 157.63750 * 9 7 6 11 11 Si 1.86794 * 120.00222 * 337.63914 * 9 7 6 12 12 H 1.48507 * 109.47423 * 84.53407 * 11 9 7 13 13 H 1.48506 * 109.47201 * 204.53637 * 11 9 7 14 14 H 1.48505 * 109.47132 * 324.53466 * 11 9 7 15 15 C 1.47031 * 108.70173 * 24.13029 * 6 5 3 16 16 C 1.54327 * 107.39979 * 358.86367 * 15 6 5 17 17 H 1.09002 * 110.71930 * 96.24567 * 16 15 6 18 18 N 1.46496 * 110.71613 * 219.51969 * 16 15 6 19 19 C 1.34779 * 120.00086 * 273.54505 * 18 16 15 20 20 O 1.21554 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.47841 * 120.00102 * 180.02562 * 19 18 16 22 22 C 1.40026 * 120.55881 * 179.72666 * 21 19 18 23 23 C 1.38361 * 118.28646 * 179.73206 * 22 21 19 24 24 C 1.38351 * 119.30070 * 0.56082 * 23 22 21 25 25 C 1.50704 * 119.45749 * 179.72281 * 24 23 22 26 26 C 1.53000 * 109.47086 * 274.97342 * 25 24 23 27 27 C 1.52998 * 109.47380 * 34.97597 * 25 24 23 28 28 N 1.31933 * 121.08350 * 359.69456 * 24 23 22 29 29 C 1.31692 * 121.87749 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47199 * 300.00487 * 1 2 3 32 32 H 1.09004 * 109.46667 * 60.00108 * 1 2 3 33 33 H 1.09001 * 110.36451 * 86.04114 * 5 3 2 34 34 H 1.08997 * 110.37075 * 323.71597 * 5 3 2 35 35 H 0.97002 * 119.99755 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.87811 * 118.35756 * 15 6 5 37 37 H 1.09000 * 109.88498 * 239.36773 * 15 6 5 38 38 H 0.97001 * 120.00035 * 93.55151 * 18 16 15 39 39 H 1.07996 * 120.85612 * 359.97438 * 22 21 19 40 40 H 1.07995 * 120.34878 * 180.25995 * 23 22 21 41 41 H 1.09003 * 109.46974 * 154.97168 * 25 24 23 42 42 H 1.08998 * 109.46485 * 59.99928 * 26 25 24 43 43 H 1.09002 * 109.47085 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47308 * 300.00158 * 26 25 24 45 45 H 1.08998 * 109.47045 * 300.00595 * 27 25 24 46 46 H 1.09009 * 109.47191 * 59.99864 * 27 25 24 47 47 H 1.08993 * 109.47539 * 179.97438 * 27 25 24 48 48 H 1.07995 * 119.71459 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7976 -1.4457 6 7 3.3606 2.7812 -1.3195 7 6 3.6220 3.8002 -2.1961 8 1 4.2317 4.6360 -1.8864 9 6 3.1031 3.7588 -3.4829 10 7 2.9619 4.8716 -4.1716 11 14 2.6052 2.1241 -4.2372 12 1 1.2240 1.7827 -3.8117 13 1 2.6562 2.2261 -5.7179 14 1 3.5398 1.0637 -3.7817 15 6 4.1211 2.4873 -0.0959 16 6 3.4497 1.2760 0.5850 17 1 3.9572 0.3505 0.3131 18 7 3.4250 1.4472 2.0397 19 6 4.4817 1.0609 2.7818 20 8 5.4554 0.5709 2.2440 21 6 4.4565 1.2332 4.2499 22 6 5.5455 0.8307 5.0327 23 6 5.4742 1.0191 6.4016 24 6 4.3355 1.5827 6.9491 25 6 4.2515 1.7837 8.4403 26 6 3.7592 0.4948 9.1017 27 6 5.6358 2.1402 8.9857 28 7 3.3222 1.9476 6.1871 29 6 3.3448 1.7940 4.8794 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.3760 2.2723 -1.8509 34 1 2.5796 0.9668 -2.0795 35 1 2.5989 4.8427 -5.0707 36 1 5.1529 2.2448 -0.3500 37 1 4.0965 3.3486 0.5718 38 1 2.6480 1.8386 2.4689 39 1 6.4202 0.3884 4.5793 40 1 6.2968 0.7247 7.0365 41 1 3.5553 2.5933 8.6592 42 1 4.4555 -0.3147 8.8828 43 1 3.6980 0.6403 10.1802 44 1 2.7729 0.2408 8.7132 45 1 6.3321 1.3306 8.7668 46 1 5.9866 3.0584 8.5145 47 1 5.5750 2.2860 10.0641 48 1 2.4954 2.1048 4.2892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081798737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:14 Heat of formation + Delta-G solvation = -40.798745 kcal Electronic energy + Delta-G solvation = -28618.567454 eV Core-core repulsion = 24673.489126 eV Total energy + Delta-G solvation = -3945.078327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89181 -40.85001 -39.66501 -37.70738 -36.52760 -35.79191 -34.08085 -33.60630 -31.85768 -30.60902 -29.38232 -28.03881 -27.58499 -26.43054 -25.40224 -24.43010 -22.98698 -22.61926 -21.77962 -21.16175 -19.55153 -18.83894 -18.29108 -17.84435 -17.41601 -17.03724 -16.42141 -16.26629 -16.15145 -15.98222 -15.78923 -15.53102 -15.37035 -15.05492 -14.83451 -14.63658 -14.48551 -14.10037 -13.93228 -13.81002 -13.68388 -13.61476 -13.25381 -13.01143 -12.86729 -12.59145 -12.49570 -12.28430 -12.21405 -12.06570 -11.88417 -11.78271 -11.58300 -11.40120 -10.98317 -10.95526 -10.71803 -10.49022 -10.31157 -10.01931 -9.17796 -8.23719 -5.52895 -0.45601 0.16755 1.24581 1.36517 1.44844 1.70465 1.83544 2.34738 2.47884 2.74575 3.02062 3.03562 3.30884 3.38845 3.60203 3.65257 3.72994 3.78689 3.85242 3.94549 4.12150 4.17417 4.21288 4.26892 4.28437 4.48590 4.52328 4.54376 4.66287 4.68044 4.72304 4.79315 4.83686 4.84870 4.86406 4.91871 4.94139 5.00788 5.06585 5.23172 5.26949 5.37856 5.42761 5.53884 5.56102 6.03294 6.11985 6.34323 6.64589 6.81039 7.03367 7.43875 7.96687 8.95430 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002536 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.355308 B =11038.191267 C =11606.950085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.391 6.391 3 C 0.088 3.912 4 H 0.108 0.892 5 C 0.089 3.911 6 N -0.619 5.619 7 C -0.238 4.238 8 H 0.065 0.935 9 C -0.028 4.028 10 N -0.948 5.948 11 Si 0.939 3.061 12 H -0.264 1.264 13 H -0.303 1.303 14 H -0.279 1.279 15 C 0.129 3.871 16 C 0.155 3.845 17 H 0.091 0.909 18 N -0.696 5.696 19 C 0.566 3.434 20 O -0.571 6.571 21 C -0.203 4.203 22 C -0.022 4.022 23 C -0.171 4.171 24 C 0.153 3.847 25 C -0.049 4.049 26 C -0.138 4.138 27 C -0.147 4.147 28 N -0.503 5.503 29 C 0.142 3.858 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.415 0.585 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -10.615 29.023 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.309 6.309 3 C 0.029 3.971 4 H 0.125 0.875 5 C -0.037 4.037 6 N -0.347 5.347 7 C -0.366 4.366 8 H 0.083 0.917 9 C -0.223 4.223 10 N -0.594 5.594 11 Si 0.768 3.232 12 H -0.189 1.189 13 H -0.231 1.231 14 H -0.205 1.205 15 C 0.003 3.997 16 C 0.049 3.951 17 H 0.109 0.891 18 N -0.348 5.348 19 C 0.354 3.646 20 O -0.451 6.451 21 C -0.208 4.208 22 C -0.048 4.048 23 C -0.190 4.190 24 C 0.016 3.984 25 C -0.069 4.069 26 C -0.196 4.196 27 C -0.205 4.205 28 N -0.212 5.212 29 C -0.016 4.016 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.254 0.746 39 H 0.165 0.835 40 H 0.189 0.811 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.232 -10.633 28.845 30.824 hybrid contribution 0.231 -0.311 -1.737 1.779 sum -2.001 -10.944 27.109 29.303 Atomic orbital electron populations 1.23088 0.78915 1.04362 1.01186 1.87890 1.22007 1.26125 1.94844 1.23383 0.93463 0.85626 0.94638 0.87466 1.22437 0.92029 0.92140 0.97065 1.44632 1.31155 1.33344 1.25561 1.18560 1.30048 0.96142 0.91868 0.91705 1.25566 1.00507 0.99518 0.96739 1.69940 1.49340 1.27305 1.12848 0.86070 0.79097 0.81596 0.76464 1.18927 1.23148 1.20455 1.21769 0.94505 0.95507 0.87926 1.21693 0.95503 0.98299 0.79630 0.89114 1.45601 1.19814 1.63391 1.06024 1.18400 0.82223 0.76950 0.86978 1.90780 1.34349 1.45860 1.74125 1.20831 0.99115 1.08090 0.92770 1.21910 0.97002 0.92077 0.93824 1.22250 1.00604 1.01465 0.94691 1.22004 0.88645 0.90294 0.97505 1.20213 1.00004 1.00200 0.86445 1.21795 1.00917 0.95558 1.01349 1.21949 0.94437 1.01981 1.02099 1.67599 1.29320 1.18411 1.05845 1.23223 0.96114 0.91501 0.90788 0.87625 0.91498 0.94301 0.92463 0.95608 0.92585 0.95655 0.93405 0.74614 0.83496 0.81128 0.89436 0.91892 0.90006 0.93425 0.90961 0.92850 0.90180 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.89 113.37 1.23 1.66 16 2 O -0.39 -11.48 10.52 -148.98 -1.57 -13.05 16 3 C 0.09 2.81 3.11 32.07 0.10 2.91 16 4 H 0.11 2.80 7.76 -2.39 -0.02 2.78 16 5 C 0.09 3.78 4.43 86.85 0.38 4.16 16 6 N -0.62 -30.17 3.21 -691.97 -2.22 -32.39 16 7 C -0.24 -13.82 10.57 84.03 0.89 -12.93 16 8 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 9 C -0.03 -1.65 5.43 84.86 0.46 -1.19 16 10 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 11 Si 0.94 47.44 24.27 68.60 1.66 49.10 16 12 H -0.26 -12.25 6.49 99.48 0.65 -11.60 16 13 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 14 H -0.28 -14.14 6.66 99.48 0.66 -13.48 16 15 C 0.13 5.32 6.98 86.73 0.61 5.92 16 16 C 0.15 5.19 2.99 46.27 0.14 5.33 16 17 H 0.09 3.41 7.70 -2.39 -0.02 3.39 16 18 N -0.70 -18.07 5.09 -439.37 -2.24 -20.31 16 19 C 0.57 16.15 7.78 86.78 0.67 16.82 16 20 O -0.57 -20.92 16.15 -3.89 -0.06 -20.98 16 21 C -0.20 -4.56 5.89 -19.99 -0.12 -4.67 16 22 C -0.02 -0.44 9.72 22.73 0.22 -0.22 16 23 C -0.17 -2.57 9.16 22.33 0.20 -2.37 16 24 C 0.15 2.50 5.79 42.57 0.25 2.74 16 25 C -0.05 -0.55 3.23 -11.54 -0.04 -0.59 16 26 C -0.14 -1.24 9.18 71.98 0.66 -0.58 16 27 C -0.15 -1.08 8.61 71.98 0.62 -0.46 16 28 N -0.50 -9.93 10.25 -182.81 -1.87 -11.81 16 29 C 0.14 2.72 10.71 85.02 0.91 3.63 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 2.51 6.63 -2.39 -0.02 2.50 16 34 H 0.03 1.19 5.58 -2.39 -0.01 1.18 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 38 H 0.42 7.77 6.59 -92.71 -0.61 7.15 16 39 H 0.15 2.91 7.74 -2.91 -0.02 2.89 16 40 H 0.17 1.51 6.29 -2.91 -0.02 1.49 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.38 6.48 -2.39 -0.02 0.37 16 46 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.18 2.44 6.42 -2.91 -0.02 2.42 16 Total: -1.00 -76.52 385.15 1.46 -75.06 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.25 Total: 13.46 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.20 Total: 20.17 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.03 Total: -123.75 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.63 Total: -34.03 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.66 Total: 49.10 kcal Total: -76.52 1.46 -75.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081798737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.260 kcal (2) G-P(sol) polarization free energy of solvation -76.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds