Wall clock time and date at job start Tue Mar 31 2020 18:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47430 * 2 1 4 4 O 1.34255 * 126.52059 * 270.16039 * 3 2 1 5 5 C 1.34055 * 108.22462 * 180.23207 * 4 3 2 6 6 N 1.29939 * 109.24264 * 359.76696 * 5 4 3 7 7 C 1.36068 * 108.47535 * 0.02562 * 6 5 4 8 8 C 1.47415 * 126.44660 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00041 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00188 * 0.02724 * 8 7 6 11 11 C 1.46498 * 120.00189 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47345 * 180.02562 * 11 10 8 13 13 C 1.53361 * 111.68658 * 299.83973 * 12 11 10 14 14 C 1.54276 * 106.46386 * 242.43352 * 13 12 11 15 15 C 1.55947 * 104.66740 * 334.54534 * 14 13 12 16 16 C 1.54577 * 111.31928 * 180.02562 * 12 11 10 17 17 H 1.08998 * 111.92190 * 18.71833 * 16 12 11 18 18 N 1.46887 * 107.36331 * 255.62342 * 16 12 11 19 19 C 1.36942 * 125.25026 * 181.61459 * 18 16 12 20 20 H 1.08001 * 119.99472 * 15.94023 * 19 18 16 21 21 C 1.38814 * 120.00167 * 195.93515 * 19 18 16 22 22 N 1.31620 * 119.99674 * 28.76750 * 21 19 18 23 23 Si 1.86792 * 120.00075 * 208.76442 * 21 19 18 24 24 H 1.48501 * 109.47251 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47056 * 120.00308 * 23 21 19 26 26 H 1.48497 * 109.47247 * 240.00193 * 23 21 19 27 27 C 1.46737 * 109.50214 * 1.88041 * 18 16 12 28 28 C 1.53866 * 111.25662 * 63.55680 * 12 11 10 29 29 H 1.08994 * 109.47697 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 300.00491 * 1 2 3 31 31 H 1.09003 * 109.46855 * 59.99781 * 1 2 3 32 32 H 1.09003 * 109.47236 * 239.99508 * 2 1 3 33 33 H 1.09003 * 109.46855 * 120.00219 * 2 1 3 34 34 H 1.07998 * 125.37667 * 179.80514 * 5 4 3 35 35 H 0.97003 * 119.99798 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47161 * 60.00164 * 11 10 8 37 37 H 1.09003 * 109.47325 * 300.00277 * 11 10 8 38 38 H 1.08994 * 110.06163 * 1.68613 * 13 12 11 39 39 H 1.08996 * 110.05389 * 123.18778 * 13 12 11 40 40 H 1.08998 * 110.50228 * 92.62957 * 14 13 12 41 41 H 1.09000 * 110.49847 * 215.17741 * 14 13 12 42 42 H 1.09009 * 110.31146 * 278.16838 * 15 14 13 43 43 H 1.09000 * 111.48028 * 154.79966 * 15 14 13 44 44 H 0.97002 * 119.99992 * 6.04524 * 22 21 19 45 45 H 1.08998 * 110.04277 * 100.28432 * 27 18 16 46 46 H 1.09003 * 110.04470 * 221.74331 * 27 18 16 47 47 H 1.08997 * 110.56849 * 212.51183 * 28 12 11 48 48 H 1.08989 * 110.57463 * 335.24245 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2959 2.1750 -1.0789 5 6 2.7262 3.3729 -0.6581 6 7 2.7351 3.3925 0.6411 7 6 2.3030 2.1843 1.0936 8 6 2.1597 1.7771 2.5031 9 8 1.7608 0.6612 2.7762 10 7 2.4708 2.6416 3.4892 11 6 2.3279 2.2372 4.8900 12 6 2.7432 3.3949 5.8000 13 6 4.2024 3.8047 5.5656 14 6 4.9469 3.5490 6.8924 15 6 3.8420 3.6404 7.9892 16 6 2.6092 3.0130 7.2919 17 1 2.5680 1.9331 7.4334 18 7 1.4056 3.6781 7.8082 19 6 0.9602 3.6135 9.1015 20 1 1.6199 3.2668 9.8831 21 6 -0.3393 3.9937 9.4079 22 7 -1.2904 3.8719 8.5064 23 14 -0.7379 4.6781 11.0996 24 1 0.4974 4.7134 11.9230 25 1 -1.2800 6.0538 10.9619 26 1 -1.7480 3.8118 11.7587 27 6 0.7507 4.4174 6.7229 28 6 1.8131 4.6073 5.6200 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0186 4.1924 -1.2979 35 1 2.7893 3.5316 3.2714 36 1 2.9645 1.3743 5.0858 37 1 1.2887 1.9745 5.0882 38 1 4.6375 3.1997 4.7702 39 1 4.2565 4.8615 5.3043 40 1 5.3884 2.5524 6.8965 41 1 5.7147 4.3062 7.0514 42 1 3.6492 4.6821 8.2461 43 1 4.1127 3.0690 8.8770 44 1 -1.1036 3.4364 7.6600 45 1 -0.0932 3.8453 6.3375 46 1 0.4109 5.3881 7.0840 47 1 2.3626 5.5369 5.7685 48 1 1.3493 4.5911 4.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094381260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:12 Heat of formation + Delta-G solvation = -3.387939 kcal Electronic energy + Delta-G solvation = -29597.897619 eV Core-core repulsion = 25654.441546 eV Total energy + Delta-G solvation = -3943.456073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.70424 -40.07371 -38.89734 -35.19699 -34.93979 -34.38167 -33.96832 -31.81440 -30.38681 -29.55074 -28.00199 -26.53029 -25.32684 -24.08548 -23.80461 -23.51906 -21.71119 -20.69963 -20.18994 -19.82833 -18.79639 -17.94349 -17.42877 -17.09519 -16.40253 -15.86393 -15.33907 -15.13510 -15.03758 -14.69115 -14.57116 -13.82665 -13.75601 -13.59291 -13.52475 -13.28103 -13.19116 -12.88372 -12.79229 -12.14020 -12.00305 -11.64469 -11.58110 -11.48749 -11.38783 -11.16965 -10.98636 -10.72502 -10.61683 -10.41028 -10.30174 -10.24607 -10.03904 -9.98344 -9.92438 -9.75413 -9.48573 -9.25398 -8.87350 -8.31956 -6.87273 -6.01786 -3.07513 0.87648 1.82774 2.27895 3.13055 3.24717 3.54906 3.58029 3.71152 3.80170 4.31119 4.60507 4.62119 4.77957 4.86474 4.91302 4.94728 4.94996 5.02898 5.27476 5.37148 5.47513 5.51113 5.52190 5.59354 5.67106 5.73522 5.77925 5.80017 5.86036 5.93739 5.96662 5.99008 6.06668 6.11338 6.19139 6.30039 6.34809 6.38506 6.53624 6.55295 6.68743 6.79613 6.96994 7.10858 7.14059 7.16664 7.58592 7.89745 8.17854 8.56393 9.10338 9.89062 10.43270 11.28626 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002981 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.102723 B = 9390.236764 C =10198.144482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.045 3.955 4 O -0.200 6.200 5 C 0.172 3.828 6 N -0.462 5.462 7 C -0.073 4.073 8 C 0.598 3.402 9 O -0.535 6.535 10 N -0.704 5.704 11 C 0.141 3.859 12 C -0.081 4.081 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.127 4.127 16 C 0.172 3.828 17 H 0.046 0.954 18 N -0.594 5.594 19 C -0.332 4.332 20 H 0.065 0.935 21 C -0.027 4.027 22 N -0.918 5.918 23 Si 1.066 2.934 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.296 1.296 27 C 0.147 3.853 28 C -0.124 4.124 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.255 0.745 35 H 0.408 0.592 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.270 0.730 45 H 0.025 0.975 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 -2.360 -19.812 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.012 4.012 4 O -0.086 6.086 5 C -0.057 4.057 6 N -0.191 5.191 7 C -0.193 4.193 8 C 0.383 3.617 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.018 3.982 12 C -0.082 4.082 13 C -0.147 4.147 14 C -0.161 4.161 15 C -0.167 4.167 16 C 0.064 3.936 17 H 0.064 0.936 18 N -0.318 5.318 19 C -0.460 4.460 20 H 0.083 0.917 21 C -0.228 4.228 22 N -0.560 5.560 23 Si 0.896 3.104 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.223 1.223 27 C 0.021 3.979 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.270 0.730 35 H 0.244 0.756 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.209 -1.980 -18.180 20.476 hybrid contribution 1.234 -0.486 -1.534 2.028 sum 10.444 -2.466 -19.714 22.445 Atomic orbital electron populations 1.21713 0.92920 1.03041 1.02576 1.20404 0.97245 0.85312 1.05397 1.23837 0.98451 0.95573 0.83306 1.84374 1.63648 1.24286 1.36334 1.28005 0.99247 0.87173 0.91250 1.70747 1.17076 1.21119 1.10165 1.21550 1.10534 0.91468 0.95731 1.16696 0.77855 0.84660 0.82513 1.90796 1.47027 1.20205 1.83190 1.45847 1.66137 1.17318 1.06153 1.21399 1.02249 0.96624 0.77956 1.21845 0.95259 0.94916 0.96146 1.22118 0.93945 1.00936 0.97739 1.22518 0.97840 1.00593 0.95140 1.23147 0.95001 1.01831 0.96743 1.21523 0.88539 0.95188 0.88331 0.93620 1.44431 1.26430 1.54335 1.06646 1.19746 0.97452 1.46548 0.82268 0.91689 1.25666 0.90751 1.01089 1.05321 1.70723 1.32633 1.43172 1.09434 0.83527 0.74869 0.76882 0.75105 1.21899 1.21811 1.22316 1.21257 0.93100 0.96003 0.87509 1.22622 0.97752 0.96506 0.99322 0.90953 0.91570 0.92662 0.89807 0.86396 0.72980 0.75625 0.91276 0.90694 0.92195 0.91636 0.92410 0.92374 0.91143 0.92471 0.91844 0.95702 0.93810 0.91592 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.44 5.93 -27.88 -0.17 -0.60 16 3 C 0.04 0.50 6.69 -35.08 -0.23 0.27 16 4 O -0.20 -1.90 10.73 6.50 0.07 -1.83 16 5 C 0.17 1.39 13.19 51.96 0.69 2.08 16 6 N -0.46 -5.36 11.06 -11.48 -0.13 -5.49 16 7 C -0.07 -0.96 6.99 -83.02 -0.58 -1.54 16 8 C 0.60 9.07 7.81 -12.52 -0.10 8.97 16 9 O -0.53 -9.19 14.80 5.26 0.08 -9.11 16 10 N -0.70 -10.21 4.63 -61.38 -0.28 -10.49 16 11 C 0.14 2.29 4.45 -4.04 -0.02 2.27 16 12 C -0.08 -1.33 0.54 -153.04 -0.08 -1.42 16 13 C -0.11 -1.52 5.60 -25.88 -0.14 -1.67 16 14 C -0.12 -1.75 6.86 -24.49 -0.17 -1.92 16 15 C -0.13 -2.31 6.32 -24.15 -0.15 -2.46 16 16 C 0.17 3.48 3.54 -65.88 -0.23 3.25 16 17 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 18 N -0.59 -14.71 2.91 -162.31 -0.47 -15.18 16 19 C -0.33 -9.29 9.67 -15.06 -0.15 -9.43 16 20 H 0.07 1.82 7.98 -52.49 -0.42 1.41 16 21 C -0.03 -0.76 5.11 -17.43 -0.09 -0.85 16 22 N -0.92 -27.99 12.97 55.49 0.72 -27.27 16 23 Si 1.07 25.76 30.00 -169.99 -5.10 20.66 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.15 3.42 5.39 -3.23 -0.02 3.41 16 28 C -0.12 -2.20 5.82 -25.59 -0.15 -2.35 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.27 6.48 -51.93 -0.34 0.94 16 34 H 0.25 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.41 5.45 7.39 -40.82 -0.30 5.15 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 39 H 0.06 0.86 7.27 -51.93 -0.38 0.48 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.40 8.06 -51.92 -0.42 0.98 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.27 8.27 5.90 -40.82 -0.24 8.03 16 45 H 0.03 0.64 6.44 -51.93 -0.33 0.31 16 46 H 0.04 1.12 8.09 -51.93 -0.42 0.70 16 47 H 0.07 1.11 7.41 -51.93 -0.38 0.73 16 48 H 0.06 1.01 7.21 -51.94 -0.37 0.64 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -33.33 381.21 -8.03 -41.36 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.43 Total: 4.55 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.23 Total: -2.94 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.16 Total: -58.43 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.15 Total: -10.94 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.33 -8.03 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094381260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.972 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds