Wall clock time and date at job start Tue Mar 31 2020 18:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47430 * 2 1 4 4 O 1.34255 * 126.52059 * 270.16039 * 3 2 1 5 5 C 1.34055 * 108.22462 * 180.23207 * 4 3 2 6 6 N 1.29939 * 109.24264 * 359.76696 * 5 4 3 7 7 C 1.36068 * 108.47535 * 0.02562 * 6 5 4 8 8 C 1.47415 * 126.44660 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00041 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00188 * 0.02724 * 8 7 6 11 11 C 1.46498 * 120.00189 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47345 * 180.02562 * 11 10 8 13 13 C 1.53361 * 111.68658 * 299.83973 * 12 11 10 14 14 C 1.54276 * 106.46386 * 242.43352 * 13 12 11 15 15 C 1.55947 * 104.66740 * 334.54534 * 14 13 12 16 16 C 1.54577 * 111.31928 * 180.02562 * 12 11 10 17 17 H 1.08998 * 111.92190 * 18.71833 * 16 12 11 18 18 N 1.46887 * 107.36331 * 255.62342 * 16 12 11 19 19 C 1.36942 * 125.25026 * 181.61459 * 18 16 12 20 20 H 1.08001 * 119.99472 * 15.94023 * 19 18 16 21 21 C 1.38814 * 120.00167 * 195.93515 * 19 18 16 22 22 N 1.31620 * 119.99674 * 28.76750 * 21 19 18 23 23 Si 1.86792 * 120.00075 * 208.76442 * 21 19 18 24 24 H 1.48501 * 109.47251 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47056 * 120.00308 * 23 21 19 26 26 H 1.48497 * 109.47247 * 240.00193 * 23 21 19 27 27 C 1.46737 * 109.50214 * 1.88041 * 18 16 12 28 28 C 1.53866 * 111.25662 * 63.55680 * 12 11 10 29 29 H 1.08994 * 109.47697 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 300.00491 * 1 2 3 31 31 H 1.09003 * 109.46855 * 59.99781 * 1 2 3 32 32 H 1.09003 * 109.47236 * 239.99508 * 2 1 3 33 33 H 1.09003 * 109.46855 * 120.00219 * 2 1 3 34 34 H 1.07998 * 125.37667 * 179.80514 * 5 4 3 35 35 H 0.97003 * 119.99798 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47161 * 60.00164 * 11 10 8 37 37 H 1.09003 * 109.47325 * 300.00277 * 11 10 8 38 38 H 1.08994 * 110.06163 * 1.68613 * 13 12 11 39 39 H 1.08996 * 110.05389 * 123.18778 * 13 12 11 40 40 H 1.08998 * 110.50228 * 92.62957 * 14 13 12 41 41 H 1.09000 * 110.49847 * 215.17741 * 14 13 12 42 42 H 1.09009 * 110.31146 * 278.16838 * 15 14 13 43 43 H 1.09000 * 111.48028 * 154.79966 * 15 14 13 44 44 H 0.97002 * 119.99992 * 6.04524 * 22 21 19 45 45 H 1.08998 * 110.04277 * 100.28432 * 27 18 16 46 46 H 1.09003 * 110.04470 * 221.74331 * 27 18 16 47 47 H 1.08997 * 110.56849 * 212.51183 * 28 12 11 48 48 H 1.08989 * 110.57463 * 335.24245 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2959 2.1750 -1.0789 5 6 2.7262 3.3729 -0.6581 6 7 2.7351 3.3925 0.6411 7 6 2.3030 2.1843 1.0936 8 6 2.1597 1.7771 2.5031 9 8 1.7608 0.6612 2.7762 10 7 2.4708 2.6416 3.4892 11 6 2.3279 2.2372 4.8900 12 6 2.7432 3.3949 5.8000 13 6 4.2024 3.8047 5.5656 14 6 4.9469 3.5490 6.8924 15 6 3.8420 3.6404 7.9892 16 6 2.6092 3.0130 7.2919 17 1 2.5680 1.9331 7.4334 18 7 1.4056 3.6781 7.8082 19 6 0.9602 3.6135 9.1015 20 1 1.6199 3.2668 9.8831 21 6 -0.3393 3.9937 9.4079 22 7 -1.2904 3.8719 8.5064 23 14 -0.7379 4.6781 11.0996 24 1 0.4974 4.7134 11.9230 25 1 -1.2800 6.0538 10.9619 26 1 -1.7480 3.8118 11.7587 27 6 0.7507 4.4174 6.7229 28 6 1.8131 4.6073 5.6200 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0186 4.1924 -1.2979 35 1 2.7893 3.5316 3.2714 36 1 2.9645 1.3743 5.0858 37 1 1.2887 1.9745 5.0882 38 1 4.6375 3.1997 4.7702 39 1 4.2565 4.8615 5.3043 40 1 5.3884 2.5524 6.8965 41 1 5.7147 4.3062 7.0514 42 1 3.6492 4.6821 8.2461 43 1 4.1127 3.0690 8.8770 44 1 -1.1036 3.4364 7.6600 45 1 -0.0932 3.8453 6.3375 46 1 0.4109 5.3881 7.0840 47 1 2.3626 5.5369 5.7685 48 1 1.3493 4.5911 4.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094381260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:11 Heat of formation + Delta-G solvation = -26.898499 kcal Electronic energy + Delta-G solvation = -29598.917113 eV Core-core repulsion = 25654.441546 eV Total energy + Delta-G solvation = -3944.475567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.47699 -41.48433 -40.22314 -36.64624 -35.97460 -35.55015 -35.01425 -33.57665 -32.08220 -30.49604 -29.38794 -28.21470 -26.53233 -25.73767 -25.01512 -24.44951 -22.67594 -21.97548 -21.68512 -21.24384 -20.01239 -19.50006 -19.10512 -17.88823 -17.33753 -17.00824 -16.82066 -16.35777 -16.15395 -15.90768 -15.62644 -15.53470 -15.21910 -15.15735 -14.80282 -14.61159 -14.46371 -14.28551 -13.73810 -13.60083 -13.29049 -12.99679 -12.82710 -12.72948 -12.52359 -12.43649 -12.25955 -12.22198 -11.99104 -11.87756 -11.82817 -11.68076 -11.60875 -11.56295 -11.53557 -11.22775 -11.18110 -10.47743 -10.31198 -9.92920 -8.98106 -8.28028 -5.30468 0.00527 1.03646 1.52377 1.55774 1.64207 1.80165 2.02092 2.17811 2.64453 3.07011 3.18515 3.34945 3.51509 3.53018 3.56507 3.72747 3.83588 4.06101 4.13269 4.20093 4.23799 4.26186 4.29841 4.33116 4.45998 4.51796 4.53543 4.62179 4.68530 4.74442 4.83238 4.88577 4.90224 4.97858 5.05422 5.07164 5.08394 5.16351 5.19305 5.21659 5.28636 5.31646 5.34788 5.40781 5.54721 5.73889 6.24403 6.33453 6.55902 6.94539 7.02447 7.75059 8.32045 9.00703 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002981 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.102723 B = 9390.236764 C =10198.144482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.048 3.952 4 O -0.196 6.196 5 C 0.198 3.802 6 N -0.493 5.493 7 C -0.101 4.101 8 C 0.594 3.406 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.153 3.847 12 C -0.066 4.066 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.122 4.122 16 C 0.157 3.843 17 H 0.028 0.972 18 N -0.612 5.612 19 C -0.334 4.334 20 H 0.060 0.940 21 C -0.084 4.084 22 N -0.949 5.949 23 Si 1.118 2.882 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.152 3.848 28 C -0.107 4.107 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.307 0.693 35 H 0.416 0.584 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.253 0.747 45 H -0.009 1.009 46 H 0.012 0.988 47 H 0.085 0.915 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.272 -1.309 -22.075 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.009 4.009 4 O -0.082 6.082 5 C -0.031 4.031 6 N -0.221 5.221 7 C -0.220 4.220 8 C 0.380 3.620 9 O -0.444 6.444 10 N -0.347 5.347 11 C 0.029 3.971 12 C -0.067 4.067 13 C -0.138 4.138 14 C -0.148 4.148 15 C -0.162 4.162 16 C 0.050 3.950 17 H 0.046 0.954 18 N -0.337 5.337 19 C -0.463 4.463 20 H 0.078 0.922 21 C -0.279 4.279 22 N -0.593 5.593 23 Si 0.942 3.058 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.221 1.221 27 C 0.026 3.974 28 C -0.145 4.145 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.321 0.679 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.009 0.991 46 H 0.031 0.969 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.966 -0.923 -20.450 23.711 hybrid contribution 0.395 -0.856 -0.911 1.311 sum 12.361 -1.778 -21.360 24.743 Atomic orbital electron populations 1.21683 0.92830 1.03757 1.01592 1.20438 0.97219 0.84775 1.05946 1.24025 0.97554 0.96053 0.83280 1.84417 1.63623 1.24709 1.35499 1.29214 0.95852 0.87192 0.90799 1.70710 1.18848 1.20603 1.11952 1.21279 1.12940 0.92995 0.94743 1.17065 0.77035 0.84232 0.83629 1.90776 1.48218 1.21455 1.83916 1.45670 1.66212 1.17683 1.05116 1.21090 0.99989 0.96755 0.79270 1.21727 0.97397 0.94092 0.93526 1.22101 0.91002 1.02455 0.98265 1.22472 0.96856 1.02356 0.93109 1.22985 0.95272 1.00120 0.97800 1.21807 0.87749 0.94107 0.91303 0.95431 1.44687 1.27560 1.55187 1.06225 1.19999 0.97213 1.45243 0.83833 0.92170 1.27071 0.91008 1.01633 1.08205 1.70847 1.33446 1.45389 1.09595 0.82836 0.75503 0.76054 0.71362 1.19620 1.21560 1.22053 1.21124 0.93976 0.93552 0.88747 1.22518 0.96348 0.97932 0.97727 0.89477 0.94630 0.91406 0.86837 0.88197 0.67884 0.74627 0.91032 0.94493 0.90182 0.89740 0.91120 0.89796 0.92869 0.93116 0.93602 0.99088 0.96935 0.89647 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.79 16 2 C -0.05 -0.83 5.93 29.85 0.18 -0.66 16 3 C 0.05 1.01 6.69 25.18 0.17 1.18 16 4 O -0.20 -3.13 10.73 0.35 0.00 -3.12 16 5 C 0.20 2.48 13.19 130.52 1.72 4.20 16 6 N -0.49 -10.27 11.06 -305.15 -3.37 -13.65 16 7 C -0.10 -2.56 6.99 40.40 0.28 -2.28 16 8 C 0.59 18.20 7.81 86.66 0.68 18.87 16 9 O -0.56 -20.18 14.80 -4.08 -0.06 -20.24 16 10 N -0.70 -19.92 4.63 -466.37 -2.16 -22.08 16 11 C 0.15 5.07 4.45 86.38 0.38 5.46 16 12 C -0.07 -2.16 0.54 -51.23 -0.03 -2.19 16 13 C -0.10 -2.46 5.60 31.15 0.17 -2.28 16 14 C -0.11 -2.77 6.86 32.05 0.22 -2.55 16 15 C -0.12 -4.33 6.32 32.27 0.20 -4.13 16 16 C 0.16 6.49 3.54 46.11 0.16 6.65 16 17 H 0.03 1.24 7.93 -2.39 -0.02 1.22 16 18 N -0.61 -31.65 2.91 -667.42 -1.94 -33.59 16 19 C -0.33 -19.37 9.67 84.03 0.81 -18.56 16 20 H 0.06 3.47 7.98 -2.91 -0.02 3.45 16 21 C -0.08 -4.97 5.11 84.86 0.43 -4.54 16 22 N -0.95 -60.80 12.97 21.65 0.28 -60.52 16 23 Si 1.12 53.22 30.00 68.60 2.06 55.28 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.15 7.46 5.39 86.78 0.47 7.93 16 28 C -0.11 -3.79 5.82 31.33 0.18 -3.60 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 2.19 6.48 -2.39 -0.02 2.17 16 34 H 0.31 -0.05 8.06 -2.91 -0.02 -0.07 16 35 H 0.42 10.45 7.39 -92.71 -0.68 9.77 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.72 7.48 -2.39 -0.02 1.70 16 39 H 0.08 1.83 7.27 -2.39 -0.02 1.81 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 2.07 8.06 -2.38 -0.02 2.05 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.25 16.65 5.90 -92.71 -0.55 16.10 16 45 H -0.01 -0.47 6.44 -2.39 -0.02 -0.49 16 46 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 47 H 0.08 2.72 7.41 -2.39 -0.02 2.71 16 48 H 0.08 2.48 7.21 -2.39 -0.02 2.47 16 Total: -1.00 -78.47 381.21 2.07 -76.40 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.51 Total: 19.83 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.76 Total: 1.70 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -7.19 Total: -129.85 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 2.06 Total: 55.28 kcal Total: -78.47 2.07 -76.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094381260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.497 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds