Wall clock time and date at job start Tue Mar 31 2020 17:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47170 * 2 1 4 4 C 1.35312 * 126.66530 * 90.00186 * 3 2 1 5 5 C 1.42268 * 103.92324 * 179.97438 * 4 3 2 6 6 C 1.48333 * 126.94281 * 179.97438 * 5 4 3 7 7 O 1.21493 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00255 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99905 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46826 * 179.97438 * 9 8 6 11 11 C 1.53513 * 111.15626 * 299.11525 * 10 9 8 12 12 C 1.54194 * 106.58500 * 240.87764 * 11 10 9 13 13 C 1.54738 * 104.34840 * 335.43487 * 12 11 10 14 14 C 1.54671 * 111.22466 * 180.02562 * 10 9 8 15 15 H 1.09002 * 112.40201 * 19.48699 * 14 10 9 16 16 N 1.47261 * 106.09779 * 256.40581 * 14 10 9 17 17 C 1.36937 * 126.51593 * 150.11016 * 16 14 10 18 18 H 1.07997 * 120.00137 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99843 * 179.97438 * 17 16 14 20 20 N 1.31613 * 120.00261 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99945 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47078 * 59.99826 * 21 19 17 23 23 H 1.48498 * 109.46955 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46961 * 299.99829 * 21 19 17 25 25 C 1.47152 * 106.96059 * 330.07503 * 16 14 10 26 26 C 1.53666 * 111.17223 * 62.60306 * 10 9 8 27 27 N 1.30984 * 106.12332 * 359.97438 * 5 4 3 28 28 O 1.20905 * 111.44289 * 359.97438 * 27 5 4 29 29 H 1.08998 * 109.47381 * 59.99904 * 1 2 3 30 30 H 1.09002 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47310 * 299.99713 * 1 2 3 32 32 H 1.09004 * 109.47088 * 239.99798 * 2 1 3 33 33 H 1.08998 * 109.47381 * 120.00096 * 2 1 3 34 34 H 1.08003 * 128.04165 * 359.93983 * 4 3 2 35 35 H 0.97000 * 119.99932 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.46832 * 300.00400 * 9 8 6 37 37 H 1.09001 * 109.46640 * 59.99945 * 9 8 6 38 38 H 1.08997 * 110.04718 * 0.98089 * 11 10 9 39 39 H 1.08998 * 110.04228 * 122.44618 * 11 10 9 40 40 H 1.09002 * 110.79777 * 216.50282 * 12 11 10 41 41 H 1.09002 * 110.10599 * 94.02834 * 12 11 10 42 42 H 1.08990 * 110.65307 * 278.62006 * 13 12 11 43 43 H 1.09001 * 110.64970 * 155.53471 * 13 12 11 44 44 H 0.97001 * 120.00312 * 180.02562 * 20 19 17 45 45 H 1.09002 * 110.09107 * 150.06616 * 25 16 14 46 46 H 1.08999 * 110.09474 * 271.59298 * 25 16 14 47 47 H 1.09007 * 110.23295 * 241.05954 * 26 10 9 48 48 H 1.09003 * 110.23818 * 3.01673 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1826 1.0854 5 6 2.7396 3.4194 0.5354 6 6 3.1662 4.6268 1.2841 7 8 3.1637 4.6205 2.4990 8 7 3.5576 5.7303 0.6167 9 6 3.9784 6.9229 1.3563 10 6 4.3701 8.0237 0.3685 11 6 5.5417 7.5807 -0.5189 12 6 6.6963 8.5661 -0.2479 13 6 5.9944 9.8500 0.2555 14 6 4.8228 9.3046 1.1080 15 1 5.1084 9.1085 2.1415 16 7 3.6995 10.2517 1.0091 17 6 3.3715 11.2242 1.9157 18 1 3.9635 11.3506 2.8100 19 6 2.2778 12.0474 1.6852 20 7 1.5565 11.8937 0.5951 21 14 1.8307 13.3744 2.9216 22 1 2.9670 14.3195 3.0661 23 1 0.6324 14.1110 2.4455 24 1 1.5375 12.7480 4.2357 25 6 2.9974 9.9551 -0.2496 26 6 3.1716 8.4460 -0.4957 27 7 2.6900 3.2768 -0.7657 28 8 2.3009 2.1747 -1.0750 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2059 1.9143 2.1272 35 1 3.5600 5.7351 -0.3532 36 1 3.1567 7.2711 1.9820 37 1 4.8347 6.6775 1.9845 38 1 5.8370 6.5622 -0.2669 39 1 5.2573 7.6385 -1.5695 40 1 7.2541 8.7695 -1.1620 41 1 7.3576 8.1662 0.5207 42 1 5.6195 10.4371 -0.5828 43 1 6.6724 10.4434 0.8689 44 1 0.7925 12.4692 0.4339 45 1 1.9393 10.1993 -0.1547 46 1 3.4402 10.5223 -1.0682 47 1 3.3810 8.2573 -1.5487 48 1 2.2756 7.9077 -0.1866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094563803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:19 Heat of formation + Delta-G solvation = 39.971146 kcal Electronic energy + Delta-G solvation = -29089.359983 eV Core-core repulsion = 25147.784101 eV Total energy + Delta-G solvation = -3941.575882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.29556 -40.04938 -38.90633 -35.32569 -34.81617 -34.09813 -33.83092 -31.60012 -30.59344 -30.21687 -28.17795 -26.80744 -25.43893 -24.50754 -23.81749 -23.43883 -22.49715 -20.47763 -20.37070 -19.50716 -18.40328 -18.01411 -17.69181 -17.08990 -16.78233 -15.65427 -15.20110 -15.09635 -14.98184 -14.77710 -14.40159 -14.08327 -13.76027 -13.63215 -13.57470 -13.38010 -13.07389 -12.82872 -12.54741 -12.26392 -11.90346 -11.86005 -11.64208 -11.42192 -11.21068 -10.99071 -10.78856 -10.64286 -10.63631 -10.53223 -10.35338 -10.24609 -10.09513 -10.03475 -9.74625 -9.72932 -9.59968 -9.48421 -8.95290 -8.65219 -6.86829 -5.62355 -3.07724 0.93944 1.45640 2.65397 2.97924 3.13872 3.41293 3.45595 3.46594 3.81792 4.20365 4.48596 4.55105 4.69881 4.76025 4.86014 4.95896 4.97810 5.09029 5.10174 5.26073 5.34668 5.49679 5.50264 5.55284 5.61828 5.63299 5.73229 5.74929 5.90910 5.95651 6.06388 6.10175 6.12918 6.16700 6.33140 6.36312 6.45494 6.47818 6.64252 6.70699 6.79623 6.89157 7.08579 7.42468 7.52218 7.63268 7.81747 7.87394 8.10535 8.42754 9.22506 9.83466 10.50355 11.37824 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002723 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.782385 B =10281.740604 C =11162.872699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.034 4.034 4 C -0.181 4.181 5 C -0.020 4.020 6 C 0.593 3.407 7 O -0.525 6.525 8 N -0.703 5.703 9 C 0.140 3.860 10 C -0.087 4.087 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.135 4.135 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.588 5.588 17 C -0.219 4.219 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.137 3.863 26 C -0.131 4.131 27 N -0.332 5.332 28 O 0.122 5.878 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.180 0.820 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.121 0.879 46 H 0.006 0.994 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -23.047 -4.252 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.204 4.204 5 C -0.180 4.180 6 C 0.376 3.624 7 O -0.400 6.400 8 N -0.354 5.354 9 C 0.018 3.982 10 C -0.089 4.089 11 C -0.150 4.150 12 C -0.160 4.160 13 C -0.175 4.175 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.309 5.309 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.012 3.988 26 C -0.169 4.169 27 N -0.032 5.032 28 O 0.046 5.954 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.197 0.803 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.138 0.862 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.725 -21.922 -4.299 22.505 hybrid contribution -0.271 0.436 0.783 0.937 sum 2.454 -21.486 -3.515 21.910 Atomic orbital electron populations 1.21820 0.93294 1.02862 1.03125 1.20148 0.96788 0.86038 1.04961 1.24527 1.02487 0.97235 0.85506 1.22433 1.04786 0.91619 1.01519 1.23602 1.06182 0.98087 0.90101 1.16881 0.77945 0.81193 0.86405 1.90806 1.54036 1.82688 1.12454 1.45961 1.65503 1.12942 1.11019 1.21514 1.00174 0.82539 0.93969 1.22028 0.96016 0.95221 0.95623 1.22217 0.95205 0.98349 0.99196 1.22266 0.96988 0.96603 1.00153 1.23021 0.97878 0.96146 1.00465 1.21663 0.88778 0.87635 0.95961 0.91659 1.44564 1.28750 1.35994 1.21546 1.19058 1.09037 1.07063 0.99598 0.90446 1.24769 0.98182 0.99874 0.97838 1.69620 1.20408 1.40919 1.26025 0.86147 0.77603 0.81365 0.80368 1.21245 1.21625 1.21150 1.21863 1.02434 0.87861 0.86644 1.22720 0.95871 1.01149 0.97204 1.74187 1.14121 0.99269 1.15654 1.84777 1.59932 1.17225 1.33460 0.91905 0.91122 0.91891 0.89100 0.88270 0.80267 0.75881 0.90407 0.91453 0.92429 0.91892 0.92516 0.92451 0.91196 0.92597 0.93669 0.86191 0.97572 0.92725 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.04 -0.19 6.50 -27.89 -0.18 -0.37 16 3 C -0.03 -0.29 6.73 -35.35 -0.24 -0.53 16 4 C -0.18 -1.93 10.92 -39.08 -0.43 -2.35 16 5 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 6 C 0.59 9.44 7.85 -12.11 -0.10 9.35 16 7 O -0.52 -9.81 16.95 5.37 0.09 -9.72 16 8 N -0.70 -10.65 4.84 -61.09 -0.30 -10.94 16 9 C 0.14 2.36 4.27 -4.04 -0.02 2.34 16 10 C -0.09 -1.49 0.65 -153.02 -0.10 -1.59 16 11 C -0.11 -1.62 5.62 -25.84 -0.15 -1.76 16 12 C -0.12 -1.77 6.83 -25.19 -0.17 -1.94 16 13 C -0.13 -2.44 6.37 -24.85 -0.16 -2.60 16 14 C 0.17 3.40 3.59 -65.67 -0.24 3.16 16 15 H 0.07 1.31 7.95 -51.93 -0.41 0.90 16 16 N -0.59 -14.57 2.98 -161.96 -0.48 -15.06 16 17 C -0.22 -6.01 10.33 -15.06 -0.16 -6.16 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.69 10.06 55.49 0.56 -26.13 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.14 3.29 5.68 -3.22 -0.02 3.27 16 26 C -0.13 -2.47 5.81 -25.92 -0.15 -2.62 16 27 N -0.33 -4.27 11.84 33.29 0.39 -3.88 16 28 O 0.12 1.30 11.18 17.23 0.19 1.49 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.18 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.41 5.66 7.62 -40.82 -0.31 5.35 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 39 H 0.06 0.88 7.10 -51.93 -0.37 0.51 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.41 7.28 -51.93 -0.38 1.03 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.12 3.29 5.46 -51.93 -0.28 3.01 16 46 H 0.01 0.16 7.71 -51.93 -0.40 -0.24 16 47 H 0.05 0.93 7.11 -51.92 -0.37 0.56 16 48 H 0.05 1.06 7.62 -51.93 -0.40 0.66 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -31.47 383.38 -8.71 -40.18 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.50 Total: 4.56 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.42 Total: -3.40 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.17 Total: -56.01 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.28 Total: -8.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.47 -8.71 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094563803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.146 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds