Wall clock time and date at job start Tue Mar 31 2020 17:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47137 * 2 1 4 4 C 1.38624 * 120.75410 * 270.02906 * 3 2 1 5 5 C 1.38559 * 119.35099 * 179.97438 * 4 3 2 6 6 N 1.31525 * 120.90332 * 359.73463 * 5 4 3 7 7 C 1.32720 * 121.64021 * 0.53095 * 6 5 4 8 8 C 1.48164 * 119.72482 * 179.75157 * 7 6 5 9 9 O 1.21518 * 120.00116 * 179.72838 * 8 7 6 10 10 N 1.34782 * 119.99852 * 359.72219 * 8 7 6 11 11 C 1.46499 * 119.99795 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.55147 * 60.13157 * 12 11 10 14 14 C 1.53290 * 109.51589 * 180.25438 * 12 11 10 15 15 N 1.47232 * 108.40967 * 172.23172 * 14 12 11 16 16 C 1.36937 * 121.03256 * 129.46000 * 15 14 12 17 17 H 1.07999 * 119.99830 * 333.77469 * 16 15 14 18 18 C 1.38814 * 119.99671 * 153.77042 * 16 15 14 19 19 N 1.31617 * 119.99660 * 160.02496 * 18 16 15 20 20 Si 1.86793 * 120.00266 * 340.02129 * 18 16 15 21 21 H 1.48503 * 109.46760 * 91.88567 * 20 18 16 22 22 H 1.48497 * 109.47347 * 211.88792 * 20 18 16 23 23 H 1.48498 * 109.47201 * 331.89168 * 20 18 16 24 24 C 1.47155 * 117.98347 * 309.49012 * 15 14 12 25 25 C 1.53294 * 108.41729 * 50.51829 * 24 15 14 26 26 O 1.42960 * 109.51742 * 300.00673 * 12 11 10 27 27 C 1.38590 * 120.75125 * 90.00033 * 3 2 1 28 28 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47012 * 299.99402 * 1 2 3 30 30 H 1.08995 * 109.47079 * 60.00005 * 1 2 3 31 31 H 1.09008 * 109.47108 * 240.00464 * 2 1 3 32 32 H 1.08995 * 109.47359 * 120.00467 * 2 1 3 33 33 H 1.08001 * 120.32781 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.54991 * 180.02562 * 5 4 3 35 35 H 0.96992 * 120.00110 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47116 * 60.00866 * 11 10 8 37 37 H 1.08996 * 109.47601 * 300.00641 * 11 10 8 38 38 H 1.08996 * 109.46656 * 299.86994 * 13 12 11 39 39 H 1.08998 * 109.46877 * 59.87220 * 13 12 11 40 40 H 1.09001 * 109.46700 * 179.87487 * 13 12 11 41 41 H 1.09001 * 109.68378 * 291.95518 * 14 12 11 42 42 H 1.09000 * 109.68200 * 52.50646 * 14 12 11 43 43 H 0.97002 * 120.00062 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.68049 * 290.77118 * 24 15 14 45 45 H 1.09003 * 109.67731 * 170.25941 * 24 15 14 46 46 H 1.08998 * 109.51349 * 67.59796 * 25 24 15 47 47 H 1.08996 * 109.51070 * 187.70400 * 25 24 15 48 48 H 1.07988 * 120.47171 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0894 -1.1913 5 6 2.7293 3.3955 -1.1574 6 7 2.9403 4.0079 -0.0126 7 6 2.7321 3.4021 1.1497 8 6 2.9890 4.1304 2.4142 9 8 2.7953 3.5823 3.4813 10 7 3.4376 5.4010 2.3808 11 6 3.6911 6.1213 3.6310 12 6 4.1890 7.5329 3.3143 13 6 3.1274 8.2809 2.5053 14 6 4.4606 8.2855 4.6219 15 7 5.1121 9.5648 4.2953 16 6 4.6422 10.7463 4.8038 17 1 3.6026 10.8394 5.0810 18 6 5.5023 11.8242 4.9630 19 7 5.0172 13.0433 5.0667 20 14 7.3479 11.5444 5.0302 21 1 7.9165 11.6627 3.6634 22 1 7.9708 12.5612 5.9152 23 1 7.6237 10.1869 5.5651 24 6 6.2834 9.5357 3.4051 25 6 5.9230 8.7223 2.1568 26 8 5.3988 7.4538 2.5567 27 6 2.2686 2.0890 1.1910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0939 1.5970 -2.1366 34 1 2.9136 3.9195 -2.0835 35 1 3.5919 5.8386 1.5291 36 1 4.4471 5.5903 4.2095 37 1 2.7687 6.1828 4.2084 38 1 2.9381 7.7477 1.5737 39 1 2.2054 8.3408 3.0835 40 1 3.4826 9.2870 2.2824 41 1 3.5199 8.4743 5.1390 42 1 5.1169 7.6914 5.2579 43 1 5.6182 13.7965 5.1784 44 1 7.1232 9.0675 3.9186 45 1 6.5504 10.5524 3.1164 46 1 5.1730 9.2595 1.5762 47 1 6.8155 8.5731 1.5492 48 1 2.0957 1.5987 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107965429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:19 Heat of formation + Delta-G solvation = -20.063505 kcal Electronic energy + Delta-G solvation = -28819.820306 eV Core-core repulsion = 24875.641126 eV Total energy + Delta-G solvation = -3944.179180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.91269 -39.65278 -38.72038 -35.48893 -35.17965 -34.42246 -32.28693 -31.63970 -31.31703 -30.71404 -28.39119 -26.88503 -26.11705 -25.02248 -24.06998 -23.14026 -22.51091 -21.47091 -20.32020 -19.06919 -17.95630 -17.15741 -16.91985 -16.35836 -16.04214 -15.64218 -15.55335 -15.37308 -15.04544 -14.53878 -14.43058 -14.24087 -14.05773 -13.99327 -13.83684 -13.71906 -13.40248 -12.91992 -12.65210 -12.41304 -12.36444 -12.25545 -11.96443 -11.84694 -11.57041 -11.47745 -11.44125 -11.00088 -10.79858 -10.46228 -10.32383 -10.28562 -9.95565 -9.79364 -9.63686 -9.53598 -9.52637 -9.38616 -8.96093 -8.58062 -7.02874 -5.99807 -3.36833 0.38700 0.86048 2.62001 3.05548 3.27374 3.45885 3.49075 3.63004 3.91566 4.05635 4.17026 4.34993 4.47903 4.62377 4.69440 4.75018 4.79677 4.83492 4.99171 5.13423 5.17392 5.25335 5.30198 5.34654 5.40646 5.41521 5.46594 5.58083 5.72204 5.73534 5.80486 5.84339 5.88141 5.92139 6.00877 6.09402 6.24960 6.25675 6.27122 6.45081 6.48420 6.51186 6.59515 6.75992 7.34656 7.64836 7.65296 7.83651 8.16805 8.25603 8.83627 9.64510 10.00766 11.15723 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.002314 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.593811 B =12095.797997 C =12349.217772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.047 4.047 4 C -0.153 4.153 5 C 0.102 3.898 6 N -0.460 5.460 7 C 0.087 3.913 8 C 0.566 3.434 9 O -0.539 6.539 10 N -0.694 5.694 11 C 0.136 3.864 12 C 0.087 3.913 13 C -0.168 4.168 14 C 0.131 3.869 15 N -0.604 5.604 16 C -0.259 4.259 17 H 0.089 0.911 18 C 0.023 3.977 19 N -0.907 5.907 20 Si 0.884 3.116 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.089 3.911 25 C 0.046 3.954 26 O -0.379 6.379 27 C -0.112 4.112 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.415 0.585 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 -23.939 -14.372 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.173 4.173 5 C -0.058 4.058 6 N -0.172 5.172 7 C -0.051 4.051 8 C 0.350 3.650 9 O -0.417 6.417 10 N -0.345 5.345 11 C 0.012 3.988 12 C 0.046 3.954 13 C -0.225 4.225 14 C 0.004 3.996 15 N -0.328 5.328 16 C -0.387 4.387 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.550 5.550 20 Si 0.715 3.285 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.196 1.196 24 C -0.037 4.037 25 C -0.032 4.032 26 O -0.298 6.298 27 C -0.133 4.133 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.320 -23.388 -13.539 27.753 hybrid contribution 0.868 -0.287 -0.390 0.994 sum -5.452 -23.675 -13.928 28.004 Atomic orbital electron populations 1.21757 0.94003 1.02272 1.02552 1.20605 0.96694 0.91385 1.03711 1.20355 0.95657 0.96817 0.92643 1.22255 0.99980 0.96257 0.98832 1.22804 0.94901 0.92081 0.95974 1.67586 1.13817 1.37794 0.98008 1.21202 0.99046 0.92570 0.92301 1.17868 0.77887 0.81894 0.87334 1.90782 1.53024 1.67879 1.29989 1.45786 1.64762 1.12902 1.11085 1.21439 1.01049 0.90447 0.85895 1.22222 0.85430 0.93502 0.94259 1.22267 0.98691 1.02143 0.99444 1.21478 0.98024 0.87448 0.92626 1.44318 1.32684 1.02681 1.53132 1.18891 0.94780 0.86700 1.38306 0.89390 1.25245 0.97783 0.95258 0.99317 1.69820 1.34860 0.97832 1.52457 0.86965 0.87254 0.77435 0.76855 1.21640 1.23093 1.19575 1.22031 0.90684 0.99840 0.91112 1.23084 0.98116 0.85026 0.96965 1.87851 1.39960 1.29268 1.72720 1.22014 0.97358 0.94298 0.99587 0.91849 0.92197 0.92397 0.90304 0.90187 0.84378 0.81980 0.74764 0.90512 0.89756 0.93132 0.91792 0.90187 0.90772 0.94800 0.92691 0.94837 0.90121 0.92532 0.89701 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.09 -0.46 6.11 -27.88 -0.17 -0.63 16 3 C -0.05 -0.37 5.17 -104.35 -0.54 -0.90 16 4 C -0.15 -1.06 9.82 -39.32 -0.39 -1.44 16 5 C 0.10 0.85 11.18 -17.56 -0.20 0.66 16 6 N -0.46 -5.30 9.54 -9.80 -0.09 -5.39 16 7 C 0.09 1.08 6.75 -83.01 -0.56 0.52 16 8 C 0.57 8.33 7.81 -12.18 -0.10 8.23 16 9 O -0.54 -9.17 16.32 5.35 0.09 -9.09 16 10 N -0.69 -9.92 5.14 -61.15 -0.31 -10.23 16 11 C 0.14 2.03 4.82 -4.04 -0.02 2.01 16 12 C 0.09 1.45 0.76 -90.47 -0.07 1.38 16 13 C -0.17 -2.68 7.92 37.16 0.29 -2.38 16 14 C 0.13 2.56 5.41 -3.49 -0.02 2.54 16 15 N -0.60 -14.04 2.35 -171.76 -0.40 -14.44 16 16 C -0.26 -7.05 10.10 -15.06 -0.15 -7.20 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.02 0.66 5.26 -17.43 -0.09 0.56 16 19 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 20 Si 0.88 22.22 24.28 -169.99 -4.13 18.09 16 21 H -0.29 -6.93 6.58 56.52 0.37 -6.56 16 22 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 23 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 24 C 0.09 1.92 4.38 -3.53 -0.02 1.90 16 25 C 0.05 0.82 6.60 37.31 0.25 1.07 16 26 O -0.38 -6.69 9.97 -35.23 -0.35 -7.04 16 27 C -0.11 -1.16 9.34 -39.05 -0.36 -1.52 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.31 8.10 -51.92 -0.42 -0.11 16 32 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.41 5.75 6.54 -40.82 -0.27 5.49 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.71 6.88 -51.93 -0.36 0.36 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.47 6.11 -51.93 -0.32 1.15 16 41 H 0.07 1.40 7.96 -51.93 -0.41 0.99 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.03 0.74 6.86 -51.93 -0.36 0.39 16 45 H 0.08 1.87 4.60 -51.93 -0.24 1.63 16 46 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.15 1.49 7.64 -52.49 -0.40 1.08 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -32.62 379.80 -7.84 -40.47 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.36 Total: 4.06 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.77 Total: 4.44 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.04 Total: -56.65 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.26 Total: -16.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.13 Total: 18.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.62 -7.84 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107965429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.402 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds