Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47137 * 2 1 4 4 C 1.38624 * 120.75410 * 270.02906 * 3 2 1 5 5 C 1.38559 * 119.35099 * 179.97438 * 4 3 2 6 6 N 1.31525 * 120.90332 * 359.73463 * 5 4 3 7 7 C 1.32720 * 121.64021 * 0.53095 * 6 5 4 8 8 C 1.48164 * 119.72482 * 179.75157 * 7 6 5 9 9 O 1.21518 * 120.00116 * 179.72838 * 8 7 6 10 10 N 1.34782 * 119.99852 * 359.72219 * 8 7 6 11 11 C 1.46499 * 119.99795 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.55147 * 60.13157 * 12 11 10 14 14 C 1.53290 * 109.51589 * 180.25438 * 12 11 10 15 15 N 1.47232 * 108.40967 * 172.23172 * 14 12 11 16 16 C 1.36937 * 121.03256 * 129.46000 * 15 14 12 17 17 H 1.07999 * 119.99830 * 333.77469 * 16 15 14 18 18 C 1.38814 * 119.99671 * 153.77042 * 16 15 14 19 19 N 1.31617 * 119.99660 * 160.02496 * 18 16 15 20 20 Si 1.86793 * 120.00266 * 340.02129 * 18 16 15 21 21 H 1.48503 * 109.46760 * 91.88567 * 20 18 16 22 22 H 1.48497 * 109.47347 * 211.88792 * 20 18 16 23 23 H 1.48498 * 109.47201 * 331.89168 * 20 18 16 24 24 C 1.47155 * 117.98347 * 309.49012 * 15 14 12 25 25 C 1.53294 * 108.41729 * 50.51829 * 24 15 14 26 26 O 1.42960 * 109.51742 * 300.00673 * 12 11 10 27 27 C 1.38590 * 120.75125 * 90.00033 * 3 2 1 28 28 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47012 * 299.99402 * 1 2 3 30 30 H 1.08995 * 109.47079 * 60.00005 * 1 2 3 31 31 H 1.09008 * 109.47108 * 240.00464 * 2 1 3 32 32 H 1.08995 * 109.47359 * 120.00467 * 2 1 3 33 33 H 1.08001 * 120.32781 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.54991 * 180.02562 * 5 4 3 35 35 H 0.96992 * 120.00110 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47116 * 60.00866 * 11 10 8 37 37 H 1.08996 * 109.47601 * 300.00641 * 11 10 8 38 38 H 1.08996 * 109.46656 * 299.86994 * 13 12 11 39 39 H 1.08998 * 109.46877 * 59.87220 * 13 12 11 40 40 H 1.09001 * 109.46700 * 179.87487 * 13 12 11 41 41 H 1.09001 * 109.68378 * 291.95518 * 14 12 11 42 42 H 1.09000 * 109.68200 * 52.50646 * 14 12 11 43 43 H 0.97002 * 120.00062 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.68049 * 290.77118 * 24 15 14 45 45 H 1.09003 * 109.67731 * 170.25941 * 24 15 14 46 46 H 1.08998 * 109.51349 * 67.59796 * 25 24 15 47 47 H 1.08996 * 109.51070 * 187.70400 * 25 24 15 48 48 H 1.07988 * 120.47171 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0894 -1.1913 5 6 2.7293 3.3955 -1.1574 6 7 2.9403 4.0079 -0.0126 7 6 2.7321 3.4021 1.1497 8 6 2.9890 4.1304 2.4142 9 8 2.7953 3.5823 3.4813 10 7 3.4376 5.4010 2.3808 11 6 3.6911 6.1213 3.6310 12 6 4.1890 7.5329 3.3143 13 6 3.1274 8.2809 2.5053 14 6 4.4606 8.2855 4.6219 15 7 5.1121 9.5648 4.2953 16 6 4.6422 10.7463 4.8038 17 1 3.6026 10.8394 5.0810 18 6 5.5023 11.8242 4.9630 19 7 5.0172 13.0433 5.0667 20 14 7.3479 11.5444 5.0302 21 1 7.9165 11.6627 3.6634 22 1 7.9708 12.5612 5.9152 23 1 7.6237 10.1869 5.5651 24 6 6.2834 9.5357 3.4051 25 6 5.9230 8.7223 2.1568 26 8 5.3988 7.4538 2.5567 27 6 2.2686 2.0890 1.1910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0939 1.5970 -2.1366 34 1 2.9136 3.9195 -2.0835 35 1 3.5919 5.8386 1.5291 36 1 4.4471 5.5903 4.2095 37 1 2.7687 6.1828 4.2084 38 1 2.9381 7.7477 1.5737 39 1 2.2054 8.3408 3.0835 40 1 3.4826 9.2870 2.2824 41 1 3.5199 8.4743 5.1390 42 1 5.1169 7.6914 5.2579 43 1 5.6182 13.7965 5.1784 44 1 7.1232 9.0675 3.9186 45 1 6.5504 10.5524 3.1164 46 1 5.1730 9.2595 1.5762 47 1 6.8155 8.5731 1.5492 48 1 2.0957 1.5987 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107965429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -42.692431 kcal Electronic energy + Delta-G solvation = -28820.801570 eV Core-core repulsion = 24875.641126 eV Total energy + Delta-G solvation = -3945.160444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76075 -40.95361 -39.89259 -36.81229 -36.10308 -35.81373 -33.78313 -33.27859 -32.32688 -31.27967 -29.96827 -28.20264 -27.74679 -25.68384 -24.94301 -24.81506 -23.41229 -22.84738 -21.33859 -20.53326 -19.07614 -18.76919 -17.98825 -17.43148 -17.33991 -16.93223 -16.72990 -16.36082 -16.16997 -15.92846 -15.71480 -15.53946 -15.45593 -14.98690 -14.82724 -14.53498 -14.46720 -14.26638 -14.06736 -13.80881 -13.48870 -13.32010 -13.27013 -12.99934 -12.96186 -12.60694 -12.37864 -12.36633 -12.16766 -12.09927 -11.88264 -11.56558 -11.46648 -11.27066 -11.07234 -10.60748 -10.54148 -10.48148 -10.34006 -10.04567 -8.95974 -8.18651 -5.51770 -0.37151 0.21571 1.26488 1.40398 1.48463 1.66955 1.98732 2.38248 2.65197 2.84338 2.99303 3.13662 3.21462 3.60910 3.74751 3.77802 3.87259 3.95733 4.01565 4.04699 4.23777 4.26928 4.28574 4.44457 4.44747 4.49415 4.52882 4.62115 4.62606 4.65957 4.72871 4.77370 4.83217 4.92226 4.95626 4.99673 5.00685 5.02982 5.10068 5.28591 5.33934 5.35938 5.38124 5.64819 5.78006 6.08732 6.21427 6.36039 6.79676 6.81197 7.07941 7.54119 7.95076 9.00534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.002314 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.593811 B =12095.797997 C =12349.217772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.136 4.136 5 C 0.095 3.905 6 N -0.482 5.482 7 C 0.059 3.941 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.691 5.691 11 C 0.143 3.857 12 C 0.098 3.902 13 C -0.160 4.160 14 C 0.125 3.875 15 N -0.616 5.616 16 C -0.243 4.243 17 H 0.059 0.941 18 C -0.033 4.033 19 N -0.953 5.953 20 Si 0.945 3.055 21 H -0.269 1.269 22 H -0.312 1.312 23 H -0.269 1.269 24 C 0.082 3.918 25 C 0.054 3.946 26 O -0.378 6.378 27 C -0.121 4.121 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.177 0.823 34 H 0.193 0.807 35 H 0.418 0.582 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.034 0.966 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.118 0.882 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -26.714 -17.326 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.065 4.065 6 N -0.194 5.194 7 C -0.078 4.078 8 C 0.350 3.650 9 O -0.451 6.451 10 N -0.341 5.341 11 C 0.019 3.981 12 C 0.057 3.943 13 C -0.217 4.217 14 C -0.001 4.001 15 N -0.341 5.341 16 C -0.373 4.373 17 H 0.077 0.923 18 C -0.228 4.228 19 N -0.599 5.599 20 Si 0.774 3.226 21 H -0.196 1.196 22 H -0.241 1.241 23 H -0.194 1.194 24 C -0.043 4.043 25 C -0.024 4.024 26 O -0.297 6.297 27 C -0.142 4.142 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.194 0.806 34 H 0.209 0.791 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.136 0.864 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.930 -26.206 -16.520 31.540 hybrid contribution 0.641 0.469 0.456 0.916 sum -5.288 -25.737 -16.064 30.796 Atomic orbital electron populations 1.21756 0.93736 1.03000 1.02008 1.20676 0.96773 0.89839 1.04865 1.20682 0.94869 0.97927 0.92023 1.22687 0.97387 0.95533 0.99952 1.23406 0.94178 0.92998 0.95901 1.67520 1.14741 1.38645 0.98480 1.20891 1.01864 0.93284 0.91778 1.18283 0.76964 0.81721 0.88038 1.90750 1.54453 1.68512 1.31431 1.45701 1.64772 1.12945 1.10717 1.21276 1.01101 0.89336 0.86400 1.22062 0.85493 0.94099 0.92633 1.22178 0.98411 1.00777 1.00374 1.21645 0.97757 0.86188 0.94471 1.44390 1.33340 1.02663 1.53678 1.18815 0.93603 0.88088 1.36748 0.92333 1.25830 1.01807 0.94993 1.00209 1.69941 1.36195 0.98679 1.55112 0.85972 0.82349 0.76765 0.77479 1.19579 1.24060 1.19401 1.22121 0.89970 0.99761 0.92449 1.23053 0.99594 0.84479 0.95232 1.87871 1.40196 1.29111 1.72544 1.22075 0.97690 0.93860 1.00565 0.90528 0.93733 0.91956 0.88017 0.90224 0.80558 0.79061 0.74389 0.91145 0.89123 0.91051 0.91391 0.92591 0.90796 0.94560 0.92891 0.94856 0.91674 0.92256 0.86409 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.40 16 2 C -0.08 -0.65 6.11 29.85 0.18 -0.47 16 3 C -0.05 -0.62 5.17 -19.69 -0.10 -0.72 16 4 C -0.14 -1.36 9.82 22.44 0.22 -1.14 16 5 C 0.09 1.30 11.18 84.82 0.95 2.24 16 6 N -0.48 -10.30 9.54 -184.91 -1.76 -12.07 16 7 C 0.06 1.43 6.75 41.91 0.28 1.71 16 8 C 0.56 16.62 7.81 86.88 0.68 17.30 16 9 O -0.57 -19.84 16.32 -3.77 -0.06 -19.90 16 10 N -0.69 -19.24 5.14 -465.66 -2.40 -21.63 16 11 C 0.14 4.20 4.82 86.38 0.42 4.62 16 12 C 0.10 3.17 0.76 -10.69 -0.01 3.16 16 13 C -0.16 -4.94 7.92 71.99 0.57 -4.37 16 14 C 0.13 4.86 5.41 86.34 0.47 5.33 16 15 N -0.62 -28.58 2.35 -697.34 -1.64 -30.22 16 16 C -0.24 -13.53 10.10 84.03 0.85 -12.68 16 17 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 18 C -0.03 -1.93 5.26 84.86 0.45 -1.48 16 19 N -0.95 -59.15 13.97 21.65 0.30 -58.84 16 20 Si 0.94 46.39 24.28 68.60 1.67 48.05 16 21 H -0.27 -12.25 6.58 99.48 0.65 -11.60 16 22 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 23 H -0.27 -12.97 6.54 99.48 0.65 -12.32 16 24 C 0.08 3.43 4.38 86.35 0.38 3.81 16 25 C 0.05 1.80 6.60 72.08 0.48 2.28 16 26 O -0.38 -12.61 9.97 -148.98 -1.49 -14.10 16 27 C -0.12 -2.43 9.34 22.61 0.21 -2.22 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.36 8.10 -2.38 -0.02 0.35 16 32 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 33 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.42 11.06 6.54 -92.71 -0.61 10.45 16 36 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 1.90 6.88 -2.39 -0.02 1.88 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.02 6.11 -2.39 -0.01 2.01 16 41 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.03 1.41 6.86 -2.39 -0.02 1.39 16 45 H 0.07 2.93 4.60 -2.39 -0.01 2.92 16 46 H 0.06 1.97 6.25 -2.39 -0.01 1.96 16 47 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.14 2.89 7.64 -2.92 -0.02 2.87 16 Total: -1.00 -72.53 379.80 1.60 -70.93 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.26 Total: 20.83 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.73 Total: 16.96 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -5.50 Total: -122.77 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.55 Total: -33.99 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.05 kcal Total: -72.53 1.60 -70.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107965429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds