Wall clock time and date at job start Tue Mar 31 2020 17:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47455 * 2 1 4 4 C 1.38619 * 120.75515 * 89.99906 * 3 2 1 5 5 C 1.38558 * 119.35220 * 180.02562 * 4 3 2 6 6 N 1.31521 * 120.90355 * 359.97438 * 5 4 3 7 7 C 1.32718 * 121.64203 * 0.02562 * 6 5 4 8 8 C 1.48175 * 119.72323 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99763 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99749 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99819 * 180.27362 * 10 8 7 12 12 C 1.52994 * 109.47355 * 179.72436 * 11 10 8 13 13 C 1.52992 * 109.51453 * 305.00441 * 12 11 10 14 14 C 1.53298 * 109.51530 * 184.89775 * 12 11 10 15 15 N 1.47153 * 108.38421 * 187.77305 * 14 12 11 16 16 C 1.36929 * 120.98107 * 230.51078 * 15 14 12 17 17 H 1.08009 * 119.99783 * 153.74555 * 16 15 14 18 18 C 1.38806 * 120.00439 * 333.75422 * 16 15 14 19 19 N 1.31620 * 120.00376 * 160.03759 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 340.03293 * 18 16 15 21 21 H 1.48502 * 109.47105 * 91.89397 * 20 18 16 22 22 H 1.48503 * 109.47524 * 211.89083 * 20 18 16 23 23 H 1.48499 * 109.47243 * 331.89211 * 20 18 16 24 24 C 1.47151 * 118.03416 * 50.53964 * 15 14 12 25 25 C 1.53297 * 108.38643 * 309.46334 * 24 15 14 26 26 O 1.42956 * 109.26529 * 52.27786 * 25 24 15 27 27 C 1.38586 * 120.75299 * 270.26104 * 3 2 1 28 28 H 1.09005 * 109.46862 * 299.99793 * 1 2 3 29 29 H 1.08997 * 109.46944 * 59.99566 * 1 2 3 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 239.99660 * 2 1 3 32 32 H 1.08999 * 109.47463 * 120.00469 * 2 1 3 33 33 H 1.07997 * 120.32597 * 0.02738 * 4 3 2 34 34 H 1.07996 * 119.55067 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00678 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47173 * 299.72668 * 11 10 8 37 37 H 1.09005 * 109.46914 * 59.72791 * 11 10 8 38 38 H 1.09004 * 109.47355 * 59.99822 * 13 12 11 39 39 H 1.08997 * 109.47632 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47075 * 299.99684 * 13 12 11 41 41 H 1.08998 * 109.68086 * 307.50225 * 14 12 11 42 42 H 1.09000 * 109.67760 * 68.01318 * 14 12 11 43 43 H 0.97002 * 119.99939 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.68182 * 69.18231 * 24 15 14 45 45 H 1.09003 * 109.68301 * 189.73444 * 24 15 14 46 46 H 1.08995 * 109.51314 * 172.22805 * 25 24 15 47 47 H 1.08999 * 109.50811 * 292.32659 * 25 24 15 48 48 H 1.08005 * 120.47618 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2687 2.0891 1.1912 5 6 2.7300 3.3952 1.1573 6 7 2.9459 4.0058 0.0126 7 6 2.7324 3.4019 -1.1498 8 6 2.9894 4.1303 -2.4142 9 8 2.7960 3.5821 -3.4813 10 7 3.4376 5.4009 -2.3808 11 6 3.6860 6.1232 -3.6310 12 6 4.1786 7.5366 -3.3143 13 6 3.1730 8.2346 -2.3966 14 6 4.3219 8.3327 -4.6164 15 7 4.9709 9.6165 -4.3064 16 6 4.4340 10.8000 -4.7377 17 1 4.6308 11.7122 -4.1939 18 6 3.6366 10.8275 -5.8735 19 7 2.8137 11.8346 -6.0759 20 14 3.7314 9.4350 -7.1151 21 1 2.7177 8.4029 -6.7798 22 1 3.4654 9.9662 -8.4761 23 1 5.0865 8.8288 -7.0765 24 6 6.2143 9.5908 -3.5199 25 6 5.9789 8.7333 -2.2712 26 8 5.4494 7.4646 -2.6631 27 6 2.2636 2.0907 -1.1910 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0950 1.5966 2.1365 34 1 2.9148 3.9191 2.0835 35 1 3.5923 5.8385 -1.5290 36 1 4.4434 5.5958 -4.2110 37 1 2.7623 6.1809 -4.2069 38 1 3.0730 7.6690 -1.4701 39 1 3.5248 9.2413 -2.1710 40 1 2.2049 8.2907 -2.8943 41 1 4.9343 7.7730 -5.3234 42 1 3.3368 8.5132 -5.0467 43 1 2.2568 11.8539 -6.8699 44 1 7.0172 9.1577 -4.1165 45 1 6.4824 10.6050 -3.2237 46 1 6.9230 8.5874 -1.7464 47 1 5.2703 9.2359 -1.6128 48 1 2.0858 1.6022 -2.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107965430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:22 Heat of formation + Delta-G solvation = -19.223916 kcal Electronic energy + Delta-G solvation = -29062.780670 eV Core-core repulsion = 25118.637898 eV Total energy + Delta-G solvation = -3944.142773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.89395 -39.65112 -38.69997 -35.46656 -35.09223 -34.51232 -32.16157 -31.57852 -31.44213 -30.69606 -28.40883 -26.86626 -25.98353 -24.98151 -23.98882 -23.57877 -22.45214 -21.10969 -20.30767 -19.11698 -17.96081 -17.25832 -16.90785 -16.30537 -16.12976 -15.64521 -15.38544 -15.32460 -14.99172 -14.61220 -14.37196 -14.28236 -14.04639 -13.95825 -13.79748 -13.74317 -13.32211 -12.91214 -12.62820 -12.37079 -12.32438 -12.26903 -11.94579 -11.84461 -11.51327 -11.45614 -11.37711 -11.05314 -10.83620 -10.41407 -10.35913 -10.18077 -9.93699 -9.81301 -9.66149 -9.50932 -9.50614 -9.37611 -8.93104 -8.57376 -7.02557 -6.00228 -3.37259 0.40763 0.87880 2.64837 3.08155 3.28952 3.46968 3.49248 3.65252 3.93830 4.07215 4.18498 4.36502 4.47809 4.64115 4.71301 4.75531 4.81488 4.85281 5.01036 5.16758 5.20002 5.26317 5.32868 5.36661 5.42725 5.43697 5.48515 5.60044 5.74494 5.75588 5.79405 5.84050 5.91273 5.95159 6.02143 6.08646 6.25456 6.27585 6.30925 6.46391 6.46994 6.53178 6.63561 6.78258 7.36874 7.65971 7.67887 7.83507 8.20020 8.25477 8.83289 9.64273 10.00708 11.15287 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.002700 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.148954 B =10368.345132 C =11061.838992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.047 4.047 4 C -0.153 4.153 5 C 0.102 3.898 6 N -0.461 5.461 7 C 0.088 3.912 8 C 0.565 3.435 9 O -0.539 6.539 10 N -0.694 5.694 11 C 0.132 3.868 12 C 0.090 3.910 13 C -0.166 4.166 14 C 0.108 3.892 15 N -0.603 5.603 16 C -0.260 4.260 17 H 0.088 0.912 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.113 3.887 25 C 0.044 3.956 26 O -0.379 6.379 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -21.210 16.653 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.174 4.174 5 C -0.058 4.058 6 N -0.173 5.173 7 C -0.050 4.050 8 C 0.349 3.651 9 O -0.416 6.416 10 N -0.346 5.346 11 C 0.008 3.992 12 C 0.048 3.952 13 C -0.223 4.223 14 C -0.018 4.018 15 N -0.328 5.328 16 C -0.388 4.388 17 H 0.106 0.894 18 C -0.174 4.174 19 N -0.549 5.549 20 Si 0.708 3.292 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.013 4.013 25 C -0.034 4.034 26 O -0.298 6.298 27 C -0.133 4.133 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.307 -20.737 15.744 26.069 hybrid contribution -0.325 -1.019 -0.387 1.138 sum -1.632 -21.756 15.357 26.680 Atomic orbital electron populations 1.21760 0.93999 1.02269 1.02571 1.20603 0.96696 0.91383 1.03700 1.20350 0.95653 0.96814 0.92634 1.22249 1.00025 0.96258 0.98818 1.22799 0.94910 0.92097 0.95961 1.67578 1.13938 1.37728 0.98008 1.21198 0.98960 0.92585 0.92267 1.17885 0.77913 0.81922 0.87358 1.90785 1.52905 1.67879 1.29999 1.45834 1.64891 1.12853 1.10999 1.21463 1.01232 0.90548 0.85925 1.22229 0.84367 0.93425 0.95160 1.22233 0.99392 1.02055 0.98620 1.21918 0.98743 0.87602 0.93567 1.44296 1.23287 1.02049 1.63144 1.18881 1.26815 0.86310 1.06777 0.89404 1.25241 0.98032 0.96647 0.97489 1.69817 1.24187 1.32399 1.28459 0.87056 0.78531 0.82057 0.81559 1.21352 1.22933 1.19435 1.21637 0.88896 0.98898 0.91888 1.23081 0.97986 0.85174 0.97160 1.87860 1.34619 1.29387 1.77943 1.22020 0.97359 0.94286 0.99614 0.92390 0.92189 0.91849 0.90195 0.90303 0.84374 0.81974 0.74792 0.90441 0.89758 0.93158 0.90219 0.91623 0.94593 0.89907 0.92652 0.95132 0.91013 0.89649 0.92809 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.43 16 2 C -0.09 -0.49 6.11 -27.88 -0.17 -0.66 16 3 C -0.05 -0.38 5.17 -104.35 -0.54 -0.92 16 4 C -0.15 -1.10 9.82 -39.32 -0.39 -1.49 16 5 C 0.10 0.88 11.18 -17.57 -0.20 0.68 16 6 N -0.46 -5.49 9.54 -9.80 -0.09 -5.58 16 7 C 0.09 1.15 6.75 -83.00 -0.56 0.59 16 8 C 0.57 8.86 7.81 -12.18 -0.10 8.76 16 9 O -0.54 -9.76 16.32 5.35 0.09 -9.67 16 10 N -0.69 -10.67 5.18 -61.14 -0.32 -10.98 16 11 C 0.13 2.24 4.85 -4.04 -0.02 2.22 16 12 C 0.09 1.63 0.78 -90.47 -0.07 1.56 16 13 C -0.17 -2.85 7.87 37.15 0.29 -2.56 16 14 C 0.11 2.37 3.05 -3.53 -0.01 2.36 16 15 N -0.60 -14.07 2.36 -171.82 -0.40 -14.47 16 16 C -0.26 -7.08 10.10 -15.06 -0.15 -7.23 16 17 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 18 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 19 N -0.91 -27.37 13.97 55.49 0.78 -26.60 16 20 Si 0.88 22.31 24.28 -169.99 -4.13 18.19 16 21 H -0.29 -6.98 6.58 56.52 0.37 -6.61 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 24 C 0.11 2.18 6.74 -3.53 -0.02 2.16 16 25 C 0.04 0.72 6.60 37.31 0.25 0.97 16 26 O -0.38 -6.75 10.18 -35.23 -0.36 -7.11 16 27 C -0.11 -1.23 9.34 -39.05 -0.36 -1.59 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.41 6.02 6.32 -40.82 -0.26 5.76 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.05 0.75 6.58 -51.93 -0.34 0.40 16 39 H 0.08 1.50 6.12 -51.93 -0.32 1.18 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.81 6.86 -51.93 -0.36 0.45 16 42 H 0.08 1.95 4.60 -51.93 -0.24 1.71 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.88 6.26 -51.93 -0.32 0.55 16 48 H 0.15 1.58 7.64 -52.48 -0.40 1.18 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -32.72 379.53 -7.83 -40.56 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.34 Total: 4.93 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.77 Total: 5.03 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.04 Total: -57.64 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.27 Total: -16.78 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.13 Total: 18.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.72 -7.83 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107965430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.333 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds