Wall clock time and date at job start Tue Mar 31 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47549 * 2 1 4 4 C 1.38176 * 120.49905 * 265.22986 * 3 2 1 5 5 N 1.31804 * 120.89277 * 180.28288 * 4 3 2 6 6 C 1.31828 * 122.04676 * 359.74354 * 5 4 3 7 7 C 1.38123 * 120.89909 * 359.97438 * 6 5 4 8 8 C 1.39793 * 120.49996 * 85.00254 * 3 2 1 9 9 C 1.48150 * 120.92307 * 0.02562 * 8 3 2 10 10 O 1.21517 * 119.99557 * 359.72211 * 9 8 3 11 11 N 1.34773 * 120.00061 * 179.72055 * 9 8 3 12 12 C 1.46494 * 120.00181 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47496 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.55516 * 60.12496 * 13 12 11 15 15 C 1.53292 * 109.51189 * 180.25345 * 13 12 11 16 16 N 1.47233 * 108.40299 * 172.22959 * 15 13 12 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 13 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 13 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47111 * 59.99119 * 1 2 3 29 29 H 1.08997 * 109.47656 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46859 * 300.00242 * 1 2 3 31 31 H 1.09004 * 109.46859 * 239.99758 * 2 1 3 32 32 H 1.08992 * 109.47383 * 120.00623 * 2 1 3 33 33 H 1.07998 * 119.55832 * 0.04869 * 4 3 2 34 34 H 1.08006 * 119.54753 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.49421 * 180.02562 * 7 6 5 36 36 H 0.97006 * 120.00217 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47543 * 59.99407 * 12 11 9 38 38 H 1.09002 * 109.46900 * 300.00200 * 12 11 9 39 39 H 1.09005 * 109.47000 * 299.87605 * 14 13 12 40 40 H 1.09000 * 109.46959 * 59.86855 * 14 13 12 41 41 H 1.09000 * 109.47652 * 179.87596 * 14 13 12 42 42 H 1.09001 * 109.68446 * 291.94465 * 15 13 12 43 43 H 1.08991 * 109.68807 * 52.50281 * 15 13 12 44 44 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 46 46 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 47 47 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 48 48 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3595 2.0489 -1.1865 5 7 2.8049 3.2894 -1.1950 6 6 2.9542 3.9866 -0.0863 7 6 2.6456 3.4384 1.1434 8 6 2.1700 2.1246 1.1999 9 6 1.8274 1.4941 2.4960 10 8 1.4156 0.3512 2.5256 11 7 1.9726 2.1880 3.6422 12 6 1.6344 1.5644 4.9239 13 6 1.8889 2.5592 6.0582 14 6 1.0194 3.8015 5.8545 15 6 1.5412 1.9053 7.4003 16 7 1.9688 2.8083 8.4818 17 6 1.1116 3.1556 9.4917 18 1 1.2461 4.0897 10.0168 19 6 0.0699 2.3070 9.8406 20 7 0.0886 1.0488 9.4547 21 14 -1.3585 2.9507 10.8578 22 1 -1.1416 4.3881 11.1617 23 1 -2.6218 2.7911 10.0938 24 1 -1.4473 2.1848 12.1269 25 6 3.3453 3.3270 8.4447 26 6 3.6051 3.9115 7.0516 27 8 3.2677 2.9368 6.0617 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 2.2524 1.5150 -2.1191 34 1 3.3221 5.0007 -0.1402 35 1 2.7700 4.0158 2.0476 36 1 2.3017 3.1003 3.6186 37 1 2.2530 0.6792 5.0719 38 1 0.5830 1.2765 4.9217 39 1 1.2703 4.2684 4.9020 40 1 -0.0317 3.5128 5.8518 41 1 1.2000 4.5083 6.6643 42 1 0.4651 1.7431 7.4619 43 1 2.0624 0.9524 7.4904 44 1 -0.6395 0.4559 9.6981 45 1 4.0482 2.5170 8.6399 46 1 3.4646 4.1059 9.1977 47 1 2.9919 4.8015 6.9100 48 1 4.6583 4.1765 6.9585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108040014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:28 Heat of formation + Delta-G solvation = -18.845050 kcal Electronic energy + Delta-G solvation = -29543.651007 eV Core-core repulsion = 25599.524663 eV Total energy + Delta-G solvation = -3944.126344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97206 -39.50317 -38.64503 -35.42018 -34.53121 -34.23463 -32.89208 -31.43865 -31.28669 -29.91289 -28.02216 -26.77865 -25.95635 -24.45555 -24.30855 -23.29193 -21.80000 -21.20338 -20.69501 -18.90594 -18.14432 -17.19341 -16.79846 -15.94292 -15.76714 -15.67540 -15.33136 -15.17706 -14.85106 -14.38611 -14.25739 -14.06252 -14.02910 -13.83085 -13.58731 -13.54124 -13.05019 -12.85649 -12.71388 -12.57627 -12.15901 -12.00351 -11.66468 -11.43953 -11.25213 -11.09451 -11.04822 -10.88944 -10.71555 -10.37793 -10.28312 -10.28264 -10.03666 -10.02791 -9.63498 -9.40121 -9.21504 -9.12695 -8.91631 -8.59584 -6.80226 -5.89933 -3.33294 0.52520 0.82100 2.83509 3.08635 3.29895 3.38214 3.39700 3.62563 4.13956 4.15428 4.38558 4.42488 4.51119 4.56157 4.74806 5.02782 5.09019 5.22059 5.28265 5.35110 5.37573 5.38797 5.44380 5.56906 5.60283 5.66023 5.68972 5.84971 5.86848 5.92629 5.93816 6.00235 6.06310 6.16579 6.23683 6.29128 6.35543 6.40166 6.50499 6.60168 6.68272 6.75970 7.00530 7.39589 7.49671 7.64268 7.66118 7.79881 8.16781 8.27228 9.05194 9.68304 10.25273 11.18127 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.002894 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.559074 B = 9671.520046 C =10475.563581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.073 4.073 4 C 0.093 3.907 5 N -0.469 5.469 6 C 0.086 3.914 7 C -0.137 4.137 8 C -0.087 4.087 9 C 0.551 3.449 10 O -0.524 6.524 11 N -0.707 5.707 12 C 0.140 3.860 13 C 0.077 3.923 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.139 0.861 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.255 0.745 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 4.241 -17.963 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.076 4.076 4 C -0.065 4.065 5 N -0.177 5.177 6 C -0.070 4.070 7 C -0.158 4.158 8 C -0.098 4.098 9 C 0.337 3.663 10 O -0.402 6.402 11 N -0.359 5.359 12 C 0.016 3.984 13 C 0.036 3.964 14 C -0.220 4.220 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.327 3.620 -18.735 19.566 hybrid contribution -0.886 0.558 1.661 1.964 sum 3.441 4.178 -17.074 17.911 Atomic orbital electron populations 1.21586 0.94119 1.01984 1.01471 1.20809 0.96896 0.91045 1.04418 1.21145 0.96092 0.97987 0.92397 1.22721 0.95582 0.90820 0.97369 1.67545 1.10950 1.07603 1.31648 1.22701 0.97046 0.99997 0.87304 1.22386 0.98328 0.94789 1.00248 1.20317 1.00711 0.94602 0.94163 1.18146 0.78714 0.85922 0.83493 1.90715 1.45562 1.17127 1.86776 1.45921 1.66104 1.17740 1.06097 1.21427 1.01422 0.95806 0.79710 1.22562 0.82165 0.94439 0.97197 1.22213 1.00259 0.98745 1.00751 1.21298 1.02022 0.91006 0.82337 1.44022 1.07147 1.55436 1.24828 1.19194 1.06931 1.00789 1.11434 0.91344 1.25041 1.00741 0.94652 0.99085 1.70017 1.32251 1.03094 1.49138 0.86227 0.82576 0.78357 0.79642 1.20241 1.21441 1.21621 1.21596 0.88263 0.97297 0.94593 1.23046 0.99068 0.91076 0.90012 1.87809 1.25653 1.60927 1.56058 0.93546 0.92188 0.92222 0.91490 0.87303 0.82288 0.82200 0.84311 0.76230 0.90528 0.89754 0.94077 0.91806 0.90681 0.88501 0.95207 0.93446 0.95630 0.92012 0.93352 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.57 37.16 0.36 -1.06 16 2 C -0.09 -1.01 5.34 -27.89 -0.15 -1.15 16 3 C -0.07 -0.82 5.19 -104.07 -0.54 -1.36 16 4 C 0.09 0.93 10.84 -17.59 -0.19 0.74 16 5 N -0.47 -5.07 10.34 -13.30 -0.14 -5.21 16 6 C 0.09 0.80 11.17 -17.60 -0.20 0.61 16 7 C -0.14 -1.33 9.62 -39.03 -0.38 -1.71 16 8 C -0.09 -1.03 5.91 -104.65 -0.62 -1.65 16 9 C 0.55 7.75 7.77 -12.19 -0.09 7.65 16 10 O -0.52 -8.59 12.29 5.35 0.07 -8.52 16 11 N -0.71 -9.63 5.11 -61.15 -0.31 -9.94 16 12 C 0.14 2.26 4.82 -4.04 -0.02 2.24 16 13 C 0.08 1.37 0.76 -90.47 -0.07 1.30 16 14 C -0.16 -2.63 7.92 37.16 0.29 -2.33 16 15 C 0.16 3.60 4.12 -3.49 -0.01 3.58 16 16 N -0.59 -13.97 2.57 -171.77 -0.44 -14.41 16 17 C -0.25 -6.60 9.65 -15.06 -0.15 -6.75 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.14 11.14 55.49 0.62 -24.53 16 21 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 C 0.11 2.16 6.73 -3.53 -0.02 2.14 16 26 C 0.05 0.75 6.60 37.31 0.25 1.00 16 27 O -0.38 -6.73 9.97 -35.23 -0.35 -7.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.75 7.25 -51.93 -0.38 0.38 16 31 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.11 1.42 5.68 -51.93 -0.29 1.12 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.14 1.07 6.54 -52.49 -0.34 0.73 16 36 H 0.40 4.78 5.35 -40.82 -0.22 4.56 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.04 0.55 6.88 -51.93 -0.36 0.19 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.34 6.11 -51.93 -0.32 1.02 16 42 H 0.10 2.42 6.14 -51.93 -0.32 2.10 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 47 H 0.05 0.77 6.25 -51.93 -0.32 0.44 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -30.28 376.94 -8.69 -38.97 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.16 Total: 5.93 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.63 Total: 3.25 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.27 Total: -54.09 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.29 Total: -15.60 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.28 -8.69 -38.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108040014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.128 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds