Wall clock time and date at job start Tue Mar 31 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47549 * 2 1 4 4 C 1.38176 * 120.49905 * 265.22986 * 3 2 1 5 5 N 1.31804 * 120.89277 * 180.28288 * 4 3 2 6 6 C 1.31828 * 122.04676 * 359.74354 * 5 4 3 7 7 C 1.38123 * 120.89909 * 359.97438 * 6 5 4 8 8 C 1.39793 * 120.49996 * 85.00254 * 3 2 1 9 9 C 1.48150 * 120.92307 * 0.02562 * 8 3 2 10 10 O 1.21517 * 119.99557 * 359.72211 * 9 8 3 11 11 N 1.34773 * 120.00061 * 179.72055 * 9 8 3 12 12 C 1.46494 * 120.00181 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47496 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.55516 * 60.12496 * 13 12 11 15 15 C 1.53292 * 109.51189 * 180.25345 * 13 12 11 16 16 N 1.47233 * 108.40299 * 172.22959 * 15 13 12 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 13 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 13 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47111 * 59.99119 * 1 2 3 29 29 H 1.08997 * 109.47656 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46859 * 300.00242 * 1 2 3 31 31 H 1.09004 * 109.46859 * 239.99758 * 2 1 3 32 32 H 1.08992 * 109.47383 * 120.00623 * 2 1 3 33 33 H 1.07998 * 119.55832 * 0.04869 * 4 3 2 34 34 H 1.08006 * 119.54753 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.49421 * 180.02562 * 7 6 5 36 36 H 0.97006 * 120.00217 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47543 * 59.99407 * 12 11 9 38 38 H 1.09002 * 109.46900 * 300.00200 * 12 11 9 39 39 H 1.09005 * 109.47000 * 299.87605 * 14 13 12 40 40 H 1.09000 * 109.46959 * 59.86855 * 14 13 12 41 41 H 1.09000 * 109.47652 * 179.87596 * 14 13 12 42 42 H 1.09001 * 109.68446 * 291.94465 * 15 13 12 43 43 H 1.08991 * 109.68807 * 52.50281 * 15 13 12 44 44 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 46 46 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 47 47 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 48 48 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3595 2.0489 -1.1865 5 7 2.8049 3.2894 -1.1950 6 6 2.9542 3.9866 -0.0863 7 6 2.6456 3.4384 1.1434 8 6 2.1700 2.1246 1.1999 9 6 1.8274 1.4941 2.4960 10 8 1.4156 0.3512 2.5256 11 7 1.9726 2.1880 3.6422 12 6 1.6344 1.5644 4.9239 13 6 1.8889 2.5592 6.0582 14 6 1.0194 3.8015 5.8545 15 6 1.5412 1.9053 7.4003 16 7 1.9688 2.8083 8.4818 17 6 1.1116 3.1556 9.4917 18 1 1.2461 4.0897 10.0168 19 6 0.0699 2.3070 9.8406 20 7 0.0886 1.0488 9.4547 21 14 -1.3585 2.9507 10.8578 22 1 -1.1416 4.3881 11.1617 23 1 -2.6218 2.7911 10.0938 24 1 -1.4473 2.1848 12.1269 25 6 3.3453 3.3270 8.4447 26 6 3.6051 3.9115 7.0516 27 8 3.2677 2.9368 6.0617 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 2.2524 1.5150 -2.1191 34 1 3.3221 5.0007 -0.1402 35 1 2.7700 4.0158 2.0476 36 1 2.3017 3.1003 3.6186 37 1 2.2530 0.6792 5.0719 38 1 0.5830 1.2765 4.9217 39 1 1.2703 4.2684 4.9020 40 1 -0.0317 3.5128 5.8518 41 1 1.2000 4.5083 6.6643 42 1 0.4651 1.7431 7.4619 43 1 2.0624 0.9524 7.4904 44 1 -0.6395 0.4559 9.6981 45 1 4.0482 2.5170 8.6399 46 1 3.4646 4.1059 9.1977 47 1 2.9919 4.8015 6.9100 48 1 4.6583 4.1765 6.9585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108040014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:28 Heat of formation + Delta-G solvation = -38.048750 kcal Electronic energy + Delta-G solvation = -29544.483741 eV Core-core repulsion = 25599.524663 eV Total energy + Delta-G solvation = -3944.959079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88906 -40.81498 -39.82882 -36.71444 -36.12139 -35.23369 -33.94340 -33.22012 -32.56748 -30.70372 -29.58634 -28.14737 -27.58198 -25.52836 -25.09537 -24.97164 -23.08697 -22.28744 -21.81760 -20.37048 -19.22894 -18.88330 -17.83954 -17.36777 -17.01106 -16.58186 -16.53895 -16.41625 -16.15513 -15.88825 -15.60075 -15.26847 -15.16567 -14.99041 -14.79217 -14.62836 -14.59576 -14.18785 -13.97135 -13.54639 -13.40491 -13.18650 -12.96360 -12.94001 -12.81703 -12.54834 -12.43910 -12.26707 -12.11701 -11.97772 -11.91978 -11.83582 -11.24815 -11.11058 -10.89761 -10.78194 -10.51074 -10.30706 -10.15588 -9.93320 -8.72544 -7.90324 -5.36807 -0.33347 0.08920 1.44699 1.47521 1.57059 1.82434 1.95986 2.47555 2.76586 2.82573 3.24226 3.44926 3.49700 3.52595 3.72484 3.80459 3.90733 3.97623 4.00161 4.09386 4.33598 4.40877 4.41922 4.46280 4.52514 4.55605 4.61095 4.66911 4.70777 4.76497 4.80874 4.89018 4.92432 4.95747 5.03530 5.09500 5.12815 5.20246 5.24329 5.35365 5.38914 5.50986 5.53247 5.61651 5.63245 6.28549 6.35708 6.42491 6.90495 7.06452 7.08951 7.75779 8.29588 9.15439 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.002894 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.559074 B = 9671.520046 C =10475.563581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.083 4.083 4 C 0.093 3.907 5 N -0.483 5.483 6 C 0.087 3.913 7 C -0.132 4.132 8 C -0.105 4.105 9 C 0.550 3.450 10 O -0.554 6.554 11 N -0.698 5.698 12 C 0.151 3.849 13 C 0.094 3.906 14 C -0.154 4.154 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.257 4.257 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.161 0.839 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.067 0.933 43 H -0.008 1.008 44 H 0.250 0.750 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 6.968 -19.939 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.086 4.086 4 C -0.064 4.064 5 N -0.192 5.192 6 C -0.069 4.069 7 C -0.152 4.152 8 C -0.116 4.116 9 C 0.337 3.663 10 O -0.433 6.433 11 N -0.350 5.350 12 C 0.026 3.974 13 C 0.053 3.947 14 C -0.211 4.211 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.387 4.387 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.304 6.304 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.201 0.799 34 H 0.209 0.791 35 H 0.178 0.822 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.209 6.393 -20.728 22.308 hybrid contribution -1.055 -0.293 2.287 2.535 sum 4.155 6.100 -18.441 19.863 Atomic orbital electron populations 1.21543 0.94234 1.02081 1.00882 1.20743 0.96777 0.91169 1.04238 1.21250 0.96561 0.98101 0.92721 1.23055 0.94767 0.90772 0.97769 1.67624 1.11253 1.07923 1.32416 1.23234 0.95958 1.01086 0.86611 1.22614 0.97273 0.93801 1.01510 1.20244 1.02521 0.95879 0.92985 1.18550 0.77894 0.85570 0.84238 1.90715 1.46766 1.18555 1.87282 1.45702 1.66205 1.18118 1.04976 1.21074 1.00566 0.94960 0.80774 1.22185 0.82887 0.95012 0.94646 1.22121 0.99336 0.97460 1.02205 1.21060 0.99631 0.90109 0.85099 1.44280 1.08670 1.55403 1.24794 1.19530 1.07103 1.00655 1.11391 0.90847 1.25775 1.03150 0.94810 1.00786 1.70181 1.32775 1.04275 1.50956 0.85244 0.79457 0.78291 0.77690 1.18734 1.21724 1.22320 1.21823 0.85868 0.97116 0.97615 1.23116 1.01583 0.90649 0.87107 1.87823 1.25104 1.61406 1.56116 0.91881 0.91810 0.94880 0.89012 0.90058 0.79928 0.79104 0.82158 0.74894 0.92397 0.90619 0.90387 0.92633 0.91863 0.91476 0.98960 0.94091 0.97061 0.90994 0.91948 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.57 71.98 0.69 -2.02 16 2 C -0.09 -1.91 5.34 29.85 0.16 -1.75 16 3 C -0.08 -1.74 5.19 -19.50 -0.10 -1.84 16 4 C 0.09 1.65 10.84 84.68 0.92 2.57 16 5 N -0.48 -9.05 10.34 -196.00 -2.03 -11.07 16 6 C 0.09 1.33 11.17 84.67 0.95 2.28 16 7 C -0.13 -2.18 9.62 22.63 0.22 -1.97 16 8 C -0.11 -2.36 5.91 -19.88 -0.12 -2.48 16 9 C 0.55 15.35 7.77 86.88 0.68 16.02 16 10 O -0.55 -18.80 12.29 -3.77 -0.05 -18.85 16 11 N -0.70 -18.37 5.11 -465.69 -2.38 -20.75 16 12 C 0.15 4.98 4.82 86.38 0.42 5.40 16 13 C 0.09 3.30 0.76 -10.70 -0.01 3.29 16 14 C -0.15 -4.75 7.92 71.98 0.57 -4.18 16 15 C 0.17 7.85 4.12 86.34 0.36 8.21 16 16 N -0.61 -29.11 2.57 -697.35 -1.79 -30.90 16 17 C -0.26 -13.46 9.65 84.03 0.81 -12.64 16 18 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 19 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 20 N -0.94 -54.41 11.14 21.65 0.24 -54.17 16 21 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 25 C 0.10 3.94 6.73 86.36 0.58 4.52 16 26 C 0.05 1.59 6.60 72.08 0.48 2.06 16 27 O -0.39 -12.79 9.97 -148.98 -1.49 -14.27 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 0.85 7.25 -2.39 -0.02 0.83 16 31 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 32 H 0.08 2.18 5.68 -2.39 -0.01 2.17 16 33 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.16 1.85 6.54 -2.91 -0.02 1.83 16 36 H 0.41 8.76 5.35 -92.70 -0.50 8.27 16 37 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.08 1.82 6.88 -2.38 -0.02 1.80 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 2.13 6.11 -2.39 -0.01 2.11 16 42 H 0.07 3.53 6.14 -2.39 -0.01 3.52 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 47 H 0.06 1.75 6.25 -2.39 -0.01 1.74 16 48 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -68.40 376.94 2.03 -66.37 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.48 Total: 22.83 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 7.01 Total: 15.20 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.96 Total: -116.89 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.53 Total: -33.12 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.40 2.03 -66.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108040014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.320 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds