Wall clock time and date at job start Tue Mar 31 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 N 1.29933 * 125.37661 * 90.00371 * 3 2 1 5 5 C 1.36067 * 108.47870 * 179.97438 * 4 3 2 6 6 C 1.47426 * 126.44788 * 180.02562 * 5 4 3 7 7 O 1.21611 * 119.99829 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99938 * 0.02562 * 6 5 4 9 9 C 1.48114 * 127.84404 * 359.97438 * 8 6 5 10 10 C 1.54334 * 104.69523 * 140.29358 * 9 8 6 11 11 H 1.08992 * 111.85384 * 262.44668 * 10 9 8 12 12 C 1.54157 * 109.65999 * 137.79132 * 10 9 8 13 13 C 1.54847 * 104.32943 * 270.86107 * 12 10 9 14 14 C 1.54838 * 102.73665 * 321.81706 * 13 12 10 15 15 C 1.54167 * 104.32653 * 38.18686 * 14 13 12 16 16 C 1.52996 * 111.82238 * 213.79384 * 15 14 13 17 17 N 1.46498 * 109.47059 * 299.25800 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.48117 * 127.83977 * 180.02562 * 8 6 5 27 27 C 1.36092 * 107.10248 * 0.25997 * 5 4 3 28 28 O 1.34055 * 125.38164 * 269.96081 * 3 2 1 29 29 H 1.08997 * 109.47000 * 59.99551 * 1 2 3 30 30 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46920 * 299.99777 * 1 2 3 32 32 H 1.09002 * 109.46736 * 240.00569 * 2 1 3 33 33 H 1.08997 * 109.47000 * 120.00449 * 2 1 3 34 34 H 1.09000 * 110.39099 * 21.49317 * 9 8 6 35 35 H 1.08996 * 110.49239 * 259.14849 * 9 8 6 36 36 H 1.08997 * 110.46377 * 29.57279 * 12 10 9 37 37 H 1.08993 * 110.46280 * 152.15306 * 12 10 9 38 38 H 1.08999 * 110.75736 * 80.12813 * 13 12 10 39 39 H 1.08998 * 110.75784 * 203.31397 * 13 12 10 40 40 H 1.09007 * 110.45961 * 279.48201 * 14 13 12 41 41 H 1.08994 * 110.46400 * 156.90326 * 14 13 12 42 42 H 1.09004 * 109.47066 * 179.26068 * 16 15 14 43 43 H 1.08994 * 109.46974 * 59.26216 * 16 15 14 44 44 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.38843 * 100.91150 * 26 8 6 47 47 H 1.08993 * 110.39475 * 338.52063 * 26 8 6 48 48 H 1.07999 * 126.52504 * 179.74608 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7176 3.3573 0.6639 6 6 3.1126 4.4722 1.5440 7 8 3.4848 5.5248 1.0621 8 7 3.0613 4.3246 2.8827 9 6 2.6386 3.1302 3.6497 10 6 3.6251 3.0563 4.8344 11 1 4.4389 2.3575 4.6417 12 6 2.8599 2.7031 6.1252 13 6 2.4340 4.0741 6.7056 14 6 3.6620 4.9682 6.4054 15 6 4.1387 4.5070 5.0137 16 6 5.6598 4.5956 4.8752 17 7 6.0861 5.9858 5.0537 18 6 7.4146 6.3096 4.9778 19 1 8.1474 5.5408 4.7820 20 6 7.8192 7.6259 5.1526 21 7 9.0958 7.9372 5.0792 22 14 6.5516 8.9553 5.4920 23 1 6.3494 9.0840 6.9576 24 1 7.0320 10.2489 4.9433 25 1 5.2658 8.5902 4.8451 26 6 3.4138 5.3207 3.9208 27 6 2.7140 3.3638 -0.6970 28 8 2.2918 2.1524 -1.0930 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7182 2.2350 3.0329 35 1 1.6179 3.2511 4.0124 36 1 1.9831 2.0979 5.8950 37 1 3.5125 2.1798 6.8239 38 1 1.5477 4.4511 6.1953 39 1 2.2585 4.0015 7.7789 40 1 4.4426 4.8055 7.1487 41 1 3.3716 6.0184 6.3800 42 1 5.9553 4.2492 3.8848 43 1 6.1306 3.9708 5.6341 44 1 5.4280 6.6762 5.2299 45 1 9.3786 8.8571 5.2009 46 1 2.5131 5.7824 4.3254 47 1 4.0785 6.0798 3.5087 48 1 2.9993 4.1859 -1.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112321474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:35 Heat of formation + Delta-G solvation = 3.115727 kcal Electronic energy + Delta-G solvation = -29684.993073 eV Core-core repulsion = 25741.819020 eV Total energy + Delta-G solvation = -3943.174053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.67582 -40.53744 -38.51757 -35.38541 -34.78181 -34.40982 -34.20324 -31.68533 -29.96961 -29.85257 -29.22299 -26.40953 -25.56534 -24.79506 -24.08831 -23.02518 -21.80812 -21.45388 -20.06454 -19.70744 -18.66352 -17.89224 -17.35973 -17.08417 -16.58129 -15.98000 -15.60420 -15.09534 -15.01948 -14.81710 -14.39966 -14.33004 -13.90253 -13.64731 -13.54691 -13.25708 -13.14394 -12.83889 -12.73117 -12.52985 -12.26488 -12.00245 -11.81344 -11.68979 -11.54441 -11.42390 -11.11407 -10.93513 -10.87438 -10.77610 -10.59085 -10.41039 -10.34668 -10.16561 -9.99162 -9.96870 -9.51126 -9.26398 -8.83587 -8.55819 -7.15863 -5.70308 -3.05085 0.92990 1.79820 2.30103 2.91655 3.29135 3.42754 3.45913 3.50539 3.55623 4.32723 4.45551 4.51381 4.63817 4.65632 4.67287 4.75509 4.76714 4.89712 5.25122 5.25584 5.27769 5.29600 5.34062 5.35805 5.38801 5.48387 5.52535 5.54966 5.60081 5.62085 5.69555 5.72834 5.81195 5.91064 5.97784 6.01627 6.07572 6.16367 6.20434 6.33014 6.42341 6.48540 6.50707 6.72277 6.80236 7.22853 7.63400 8.05733 8.16990 8.48658 9.27856 10.00305 10.20326 11.48396 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003454 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.238744 B = 8105.616770 C = 9264.848503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.194 3.806 4 N -0.456 5.456 5 C -0.059 4.059 6 C 0.616 3.384 7 O -0.532 6.532 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.098 4.098 11 H 0.087 0.913 12 C -0.112 4.112 13 C -0.125 4.125 14 C -0.109 4.109 15 C -0.080 4.080 16 C 0.178 3.822 17 N -0.753 5.753 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.114 3.886 27 C 0.010 3.990 28 O -0.196 6.196 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.031 0.969 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.603 -18.624 -6.982 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C -0.015 4.015 4 N -0.186 5.186 5 C -0.179 4.179 6 C 0.403 3.597 7 O -0.409 6.409 8 N -0.332 5.332 9 C -0.022 4.022 10 C -0.118 4.118 11 H 0.106 0.894 12 C -0.150 4.150 13 C -0.162 4.162 14 C -0.147 4.147 15 C -0.081 4.081 16 C 0.051 3.949 17 N -0.398 5.398 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.712 3.288 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.008 4.008 27 C -0.063 4.063 28 O -0.082 6.082 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.225 -18.277 -6.793 28.822 hybrid contribution -0.578 1.472 -0.451 1.645 sum -21.804 -16.805 -7.245 28.466 Atomic orbital electron populations 1.21791 0.92947 1.03090 1.03057 1.20117 0.96917 0.83951 1.05488 1.26435 0.99509 0.97043 0.78494 1.70754 1.15834 1.02698 1.29315 1.21749 1.09180 0.94085 0.92907 1.16287 0.77936 0.85198 0.80245 1.90873 1.48183 1.27510 1.74348 1.48595 1.64143 1.16656 1.03841 1.22813 0.97049 0.89729 0.92568 1.22712 0.97709 0.96659 0.94676 0.89432 1.22317 0.99397 0.97253 0.96052 1.22505 0.97969 0.95422 1.00349 1.22345 0.97364 0.99155 0.95800 1.22338 0.96961 0.94114 0.94668 1.20533 0.88640 0.87459 0.98258 1.42684 1.05568 1.03447 1.88120 1.19039 0.82665 0.94286 1.40979 0.89327 1.24643 0.95627 0.96836 1.02009 1.69698 1.13433 1.18254 1.56996 0.86579 0.81641 0.82575 0.78016 1.21075 1.21731 1.20250 1.22587 0.99168 0.92049 0.87010 1.25288 0.98866 0.86488 0.95687 1.84383 1.63551 1.22423 1.37879 0.92150 0.90771 0.91636 0.88705 0.87351 0.87404 0.91530 0.91589 0.91205 0.91905 0.91560 0.90337 0.91631 0.95722 0.95137 0.80657 0.93133 0.91319 0.88720 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.90 37.16 0.37 -0.30 16 2 C -0.03 -0.14 6.56 -27.88 -0.18 -0.32 16 3 C 0.19 1.86 7.56 -13.08 -0.10 1.76 16 4 N -0.46 -5.49 8.39 -7.65 -0.06 -5.55 16 5 C -0.06 -0.83 6.86 -83.02 -0.57 -1.39 16 6 C 0.62 10.56 7.91 -12.52 -0.10 10.46 16 7 O -0.53 -10.89 17.15 5.27 0.09 -10.80 16 8 N -0.60 -9.56 3.31 -170.69 -0.57 -10.13 16 9 C 0.10 1.27 6.11 -2.46 -0.02 1.26 16 10 C -0.10 -1.24 3.53 -88.30 -0.31 -1.55 16 11 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 12 C -0.11 -1.14 6.13 -25.15 -0.15 -1.30 16 13 C -0.12 -1.35 6.85 -24.79 -0.17 -1.52 16 14 C -0.11 -1.54 5.14 -25.15 -0.13 -1.67 16 15 C -0.08 -1.25 0.62 -152.18 -0.09 -1.34 16 16 C 0.18 3.60 5.14 -4.04 -0.02 3.58 16 17 N -0.75 -18.44 4.73 -59.91 -0.28 -18.72 16 18 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.94 -30.30 13.97 55.49 0.78 -29.52 16 22 Si 0.88 22.93 27.74 -169.99 -4.71 18.21 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 25 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 26 C 0.11 1.92 5.83 -2.45 -0.01 1.90 16 27 C 0.01 0.12 11.95 29.96 0.36 0.47 16 28 O -0.20 -2.00 10.73 6.50 0.07 -1.93 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 1.34 5.45 -51.93 -0.28 1.05 16 35 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 36 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.36 8.62 4.77 -40.82 -0.19 8.43 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 46 H 0.07 1.04 7.67 -51.93 -0.40 0.64 16 47 H 0.09 1.96 6.99 -51.93 -0.36 1.60 16 48 H 0.23 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -36.05 382.62 -7.82 -43.88 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.51 Total: 5.90 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.39 Total: 2.89 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.14 Total: -63.92 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.16 Total: -12.73 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.05 -7.82 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112321474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.994 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds