Wall clock time and date at job start Tue Mar 31 2020 18:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 N 1.29933 * 125.37661 * 90.00371 * 3 2 1 5 5 C 1.36067 * 108.47870 * 179.97438 * 4 3 2 6 6 C 1.47426 * 126.44788 * 180.02562 * 5 4 3 7 7 O 1.21611 * 119.99829 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99938 * 0.02562 * 6 5 4 9 9 C 1.48114 * 127.84404 * 359.97438 * 8 6 5 10 10 C 1.54334 * 104.69523 * 140.29358 * 9 8 6 11 11 H 1.08992 * 111.85384 * 262.44668 * 10 9 8 12 12 C 1.54157 * 109.65999 * 137.79132 * 10 9 8 13 13 C 1.54847 * 104.32943 * 270.86107 * 12 10 9 14 14 C 1.54838 * 102.73665 * 321.81706 * 13 12 10 15 15 C 1.54167 * 104.32653 * 38.18686 * 14 13 12 16 16 C 1.52996 * 111.82238 * 213.79384 * 15 14 13 17 17 N 1.46498 * 109.47059 * 299.25800 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.48117 * 127.83977 * 180.02562 * 8 6 5 27 27 C 1.36092 * 107.10248 * 0.25997 * 5 4 3 28 28 O 1.34055 * 125.38164 * 269.96081 * 3 2 1 29 29 H 1.08997 * 109.47000 * 59.99551 * 1 2 3 30 30 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46920 * 299.99777 * 1 2 3 32 32 H 1.09002 * 109.46736 * 240.00569 * 2 1 3 33 33 H 1.08997 * 109.47000 * 120.00449 * 2 1 3 34 34 H 1.09000 * 110.39099 * 21.49317 * 9 8 6 35 35 H 1.08996 * 110.49239 * 259.14849 * 9 8 6 36 36 H 1.08997 * 110.46377 * 29.57279 * 12 10 9 37 37 H 1.08993 * 110.46280 * 152.15306 * 12 10 9 38 38 H 1.08999 * 110.75736 * 80.12813 * 13 12 10 39 39 H 1.08998 * 110.75784 * 203.31397 * 13 12 10 40 40 H 1.09007 * 110.45961 * 279.48201 * 14 13 12 41 41 H 1.08994 * 110.46400 * 156.90326 * 14 13 12 42 42 H 1.09004 * 109.47066 * 179.26068 * 16 15 14 43 43 H 1.08994 * 109.46974 * 59.26216 * 16 15 14 44 44 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.38843 * 100.91150 * 26 8 6 47 47 H 1.08993 * 110.39475 * 338.52063 * 26 8 6 48 48 H 1.07999 * 126.52504 * 179.74608 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7176 3.3573 0.6639 6 6 3.1126 4.4722 1.5440 7 8 3.4848 5.5248 1.0621 8 7 3.0613 4.3246 2.8827 9 6 2.6386 3.1302 3.6497 10 6 3.6251 3.0563 4.8344 11 1 4.4389 2.3575 4.6417 12 6 2.8599 2.7031 6.1252 13 6 2.4340 4.0741 6.7056 14 6 3.6620 4.9682 6.4054 15 6 4.1387 4.5070 5.0137 16 6 5.6598 4.5956 4.8752 17 7 6.0861 5.9858 5.0537 18 6 7.4146 6.3096 4.9778 19 1 8.1474 5.5408 4.7820 20 6 7.8192 7.6259 5.1526 21 7 9.0958 7.9372 5.0792 22 14 6.5516 8.9553 5.4920 23 1 6.3494 9.0840 6.9576 24 1 7.0320 10.2489 4.9433 25 1 5.2658 8.5902 4.8451 26 6 3.4138 5.3207 3.9208 27 6 2.7140 3.3638 -0.6970 28 8 2.2918 2.1524 -1.0930 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7182 2.2350 3.0329 35 1 1.6179 3.2511 4.0124 36 1 1.9831 2.0979 5.8950 37 1 3.5125 2.1798 6.8239 38 1 1.5477 4.4511 6.1953 39 1 2.2585 4.0015 7.7789 40 1 4.4426 4.8055 7.1487 41 1 3.3716 6.0184 6.3800 42 1 5.9553 4.2492 3.8848 43 1 6.1306 3.9708 5.6341 44 1 5.4280 6.6762 5.2299 45 1 9.3786 8.8571 5.2009 46 1 2.5131 5.7824 4.3254 47 1 4.0785 6.0798 3.5087 48 1 2.9993 4.1859 -1.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112321474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:34 Heat of formation + Delta-G solvation = -22.645678 kcal Electronic energy + Delta-G solvation = -29686.110172 eV Core-core repulsion = 25741.819020 eV Total energy + Delta-G solvation = -3944.291151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.52668 -41.74788 -39.80586 -36.71407 -36.17817 -35.56734 -34.82366 -33.72967 -31.41564 -30.79347 -30.34874 -27.92232 -26.65688 -25.69572 -25.20430 -24.33659 -23.40102 -22.23632 -21.09780 -20.74873 -20.26407 -19.49716 -18.57519 -17.94026 -17.69172 -17.09742 -16.80889 -16.65804 -16.25985 -15.70665 -15.58302 -15.41656 -15.26561 -14.98593 -14.85959 -14.57599 -14.41957 -13.91426 -13.79479 -13.66952 -13.56239 -13.28621 -13.10612 -12.83979 -12.61191 -12.38528 -12.29003 -12.08022 -12.02394 -11.96810 -11.88501 -11.82002 -11.63835 -11.55821 -11.47617 -11.42221 -11.08313 -11.01817 -10.19976 -9.77612 -9.34835 -8.07702 -5.40745 -0.01097 0.89831 1.31262 1.36164 1.42409 1.49223 1.79353 2.11490 2.43284 2.74094 3.21880 3.24888 3.42093 3.58317 3.64556 3.71972 3.86918 4.14262 4.18494 4.21606 4.25045 4.28035 4.34107 4.38675 4.43768 4.50104 4.53502 4.57160 4.65300 4.76165 4.78697 4.86184 4.93153 4.97828 5.02363 5.04340 5.07692 5.14490 5.17603 5.29458 5.32552 5.33620 5.39259 5.46418 5.52780 5.69462 6.16202 6.31550 6.46393 6.90322 7.02474 7.77939 7.98334 9.14217 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003454 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.238744 B = 8105.616770 C = 9264.848503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.205 3.795 4 N -0.472 5.472 5 C -0.090 4.090 6 C 0.606 3.394 7 O -0.582 6.582 8 N -0.605 5.605 9 C 0.106 3.894 10 C -0.092 4.092 11 H 0.082 0.918 12 C -0.103 4.103 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.075 4.075 16 C 0.179 3.821 17 N -0.752 5.752 18 C -0.235 4.235 19 H 0.053 0.947 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.952 3.048 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.260 1.260 26 C 0.114 3.886 27 C 0.024 3.976 28 O -0.193 6.193 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.060 0.940 42 H -0.001 1.001 43 H 0.033 0.967 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.304 -20.816 -6.370 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.004 4.004 4 N -0.202 5.202 5 C -0.209 4.209 6 C 0.396 3.604 7 O -0.463 6.463 8 N -0.335 5.335 9 C -0.015 4.015 10 C -0.112 4.112 11 H 0.100 0.900 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.077 4.077 16 C 0.053 3.947 17 N -0.397 5.397 18 C -0.366 4.366 19 H 0.071 0.929 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.778 3.222 23 H -0.192 1.192 24 H -0.221 1.221 25 H -0.185 1.185 26 C -0.009 4.009 27 C -0.051 4.051 28 O -0.079 6.079 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.051 0.949 44 H 0.199 0.801 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.067 0.933 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -24.973 -20.534 -6.142 32.909 hybrid contribution 0.644 2.011 -0.730 2.235 sum -24.328 -18.523 -6.872 31.340 Atomic orbital electron populations 1.21780 0.92079 1.04364 1.02271 1.20456 0.97441 0.81293 1.07235 1.27415 0.97381 0.98003 0.77646 1.70682 1.17055 1.02141 1.30343 1.21436 1.11785 0.94346 0.93328 1.16797 0.77259 0.85521 0.80854 1.90825 1.50582 1.29593 1.75279 1.48758 1.63550 1.17492 1.03683 1.22985 0.97928 0.88583 0.91998 1.22721 0.97895 0.94121 0.96449 0.89997 1.22313 1.00144 0.97376 0.94220 1.22482 0.96363 0.94539 1.01804 1.22357 0.98804 0.99787 0.93955 1.22240 0.93194 0.96584 0.95636 1.20618 0.92456 0.85036 0.96604 1.42646 1.03790 1.05453 1.87830 1.19012 0.84196 0.93632 1.39742 0.92926 1.25479 0.97841 0.99421 1.02563 1.69878 1.15836 1.18813 1.58819 0.85460 0.79317 0.78649 0.78746 1.19213 1.22112 1.18490 1.22517 0.99230 0.91678 0.87437 1.25618 0.97198 0.87124 0.95130 1.84431 1.63382 1.21983 1.38078 0.92594 0.88464 0.92769 0.86465 0.86053 0.86905 0.89260 0.88735 0.90529 0.90771 0.89672 0.91552 0.92142 0.98312 0.94947 0.80070 0.93240 0.89156 0.93261 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 71.98 0.71 -0.14 16 2 C -0.03 -0.19 6.56 29.85 0.20 0.00 16 3 C 0.20 3.50 7.56 88.39 0.67 4.16 16 4 N -0.47 -10.72 8.39 -293.03 -2.46 -13.18 16 5 C -0.09 -2.50 6.86 40.41 0.28 -2.23 16 6 C 0.61 21.39 7.91 86.66 0.69 22.08 16 7 O -0.58 -25.07 17.15 -4.07 -0.07 -25.13 16 8 N -0.60 -19.23 3.31 -812.19 -2.69 -21.92 16 9 C 0.11 2.46 6.11 86.52 0.53 2.99 16 10 C -0.09 -2.15 3.53 -9.29 -0.03 -2.18 16 11 H 0.08 2.02 7.88 -2.39 -0.02 2.00 16 12 C -0.10 -1.68 6.13 31.62 0.19 -1.49 16 13 C -0.11 -2.03 6.85 31.85 0.22 -1.81 16 14 C -0.11 -2.94 5.14 31.62 0.16 -2.78 16 15 C -0.08 -2.32 0.62 -50.67 -0.03 -2.36 16 16 C 0.18 7.48 5.14 86.38 0.44 7.93 16 17 N -0.75 -37.88 4.73 -343.46 -1.63 -39.50 16 18 C -0.23 -14.35 10.47 84.03 0.88 -13.47 16 19 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.98 -65.90 13.97 21.65 0.30 -65.59 16 22 Si 0.95 48.20 27.74 68.60 1.90 50.11 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 25 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 26 C 0.11 3.85 5.83 86.52 0.50 4.35 16 27 C 0.02 0.52 11.95 67.32 0.80 1.33 16 28 O -0.19 -3.60 10.73 0.34 0.00 -3.59 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 2.57 5.45 -2.39 -0.01 2.55 16 35 H 0.09 1.70 7.67 -2.39 -0.02 1.69 16 36 H 0.09 1.09 7.79 -2.39 -0.02 1.08 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.92 7.96 -2.38 -0.02 1.90 16 41 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16 42 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.37 17.63 4.77 -92.71 -0.44 17.19 16 45 H 0.26 16.44 8.31 -92.70 -0.77 15.67 16 46 H 0.09 2.63 7.67 -2.39 -0.02 2.61 16 47 H 0.05 2.12 6.99 -2.39 -0.02 2.10 16 48 H 0.25 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -83.38 382.62 2.51 -80.87 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.47 Total: 24.91 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 6.68 Total: 13.03 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -6.47 Total: -140.19 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.07 Total: -28.73 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.90 Total: 50.11 kcal Total: -83.38 2.51 -80.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112321474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.227 kcal (2) G-P(sol) polarization free energy of solvation -83.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds