Wall clock time and date at job start Tue Mar 31 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47469 * 2 1 4 4 C 1.50709 * 109.47194 * 120.00191 * 2 1 3 5 5 C 1.38605 * 119.54476 * 274.97572 * 4 2 1 6 6 C 1.38587 * 119.34767 * 179.97438 * 5 4 2 7 7 C 1.38630 * 118.48737 * 359.75111 * 6 5 4 8 8 C 1.39271 * 119.06043 * 0.51513 * 7 6 5 9 9 C 1.48166 * 119.72084 * 179.75412 * 8 7 6 10 10 O 1.21521 * 119.99967 * 359.72046 * 9 8 7 11 11 N 1.34777 * 119.99971 * 179.72577 * 9 8 7 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 O 1.42900 * 110.64094 * 66.68266 * 13 12 11 15 15 C 1.55151 * 110.71827 * 190.02213 * 13 12 11 16 16 C 1.54913 * 101.58113 * 153.86369 * 15 13 12 17 17 N 1.47422 * 104.82990 * 322.99098 * 16 15 13 18 18 C 1.36942 * 125.64844 * 204.16000 * 17 16 15 19 19 H 1.08000 * 119.99967 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99933 * 359.96308 * 18 17 16 21 21 N 1.31615 * 119.99831 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00070 * 179.97438 * 20 18 17 23 23 H 1.48489 * 109.47577 * 59.99608 * 22 20 18 24 24 H 1.48506 * 109.47281 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46731 * 299.99341 * 22 20 18 26 26 C 1.47015 * 108.70637 * 24.12887 * 17 16 15 27 27 N 1.31487 * 119.54789 * 94.99836 * 4 2 1 28 28 H 1.08994 * 109.46626 * 299.99931 * 1 2 3 29 29 H 1.08998 * 109.46841 * 59.99833 * 1 2 3 30 30 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47087 * 239.99819 * 2 1 3 32 32 H 1.09003 * 109.46344 * 299.99961 * 3 2 1 33 33 H 1.08999 * 109.46762 * 60.00068 * 3 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 3 2 1 35 35 H 1.07998 * 120.32613 * 0.02562 * 5 4 2 36 36 H 1.08002 * 120.75239 * 179.97438 * 6 5 4 37 37 H 1.07998 * 120.46734 * 180.26365 * 7 6 5 38 38 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 40 40 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 41 41 H 0.96696 * 114.00347 * 300.70663 * 14 13 12 42 42 H 1.08997 * 111.00828 * 271.93643 * 15 13 12 43 43 H 1.09002 * 111.00715 * 35.79232 * 15 13 12 44 44 H 1.09002 * 110.37177 * 204.15129 * 16 15 13 45 45 H 1.08997 * 110.36834 * 81.82696 * 16 15 13 46 46 H 0.97007 * 120.00260 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.88141 * 239.52211 * 26 17 16 48 48 H 1.08999 * 109.88651 * 118.36182 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.1616 -0.0098 2.4194 6 6 2.6234 -0.6673 3.5486 7 6 2.9368 -2.0140 3.4478 8 6 2.7878 -2.6531 2.2194 9 6 3.1236 -4.0907 2.0938 10 8 3.5321 -4.7058 3.0590 11 7 2.9763 -4.7162 0.9091 12 6 3.3089 -6.1376 0.7848 13 6 3.0529 -6.5975 -0.6518 14 8 3.9631 -5.9644 -1.5532 15 6 3.1525 -8.1421 -0.7596 16 6 2.2425 -8.4280 -1.9802 17 7 1.1336 -7.4643 -1.8581 18 6 -0.1170 -7.6143 -2.3955 19 1 -0.8634 -6.8478 -2.2485 20 6 -0.4252 -8.7516 -3.1294 21 7 0.4847 -9.6854 -3.3092 22 14 -2.1313 -8.9566 -3.8619 23 1 -2.4047 -7.8389 -4.8005 24 1 -2.2043 -10.2470 -4.5933 25 1 -3.1416 -8.9474 -2.7735 26 6 1.5924 -6.3158 -1.0632 27 7 2.3425 -1.9864 1.1614 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.9041 1.0380 2.4656 36 1 2.7332 -0.1433 4.4866 37 1 3.2953 -2.5587 4.3086 38 1 2.6500 -4.2253 0.1388 39 1 4.3596 -6.2879 1.0330 40 1 2.6877 -6.7172 1.4677 41 1 3.9110 -4.9988 -1.5512 42 1 4.1782 -8.4548 -0.9553 43 1 2.7639 -8.6224 0.1384 44 1 1.8637 -9.4493 -1.9401 45 1 2.7893 -8.2615 -2.9083 46 1 0.2693 -10.4803 -3.8218 47 1 0.9709 -6.2084 -0.1741 48 1 1.5449 -5.4070 -1.6631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271168264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:15 Heat of formation + Delta-G solvation = -28.241522 kcal Electronic energy + Delta-G solvation = -28872.637918 eV Core-core repulsion = 24928.104112 eV Total energy + Delta-G solvation = -3944.533805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99832 -39.54863 -38.34254 -35.84674 -35.11760 -34.26920 -32.90414 -32.03357 -30.70577 -29.54632 -28.19968 -27.53755 -25.91594 -24.74153 -24.20734 -23.33217 -21.45064 -20.51748 -19.94892 -19.83003 -18.26550 -17.16715 -16.89336 -16.64287 -15.92690 -15.59313 -15.53112 -15.03664 -14.74325 -14.69022 -14.35584 -14.19468 -13.95235 -13.74617 -13.50560 -13.27109 -13.02798 -12.91161 -12.68223 -12.33298 -12.21233 -12.05748 -11.78540 -11.55232 -11.51906 -11.25509 -11.02853 -10.84867 -10.74823 -10.48622 -10.27301 -10.24932 -10.15902 -9.95332 -9.69536 -9.68296 -9.38282 -9.34336 -9.02820 -8.63218 -6.83813 -5.64479 -3.06625 0.39068 0.89597 2.59643 3.00675 3.41176 3.45013 3.46669 3.61118 3.70023 4.24384 4.44997 4.50243 4.52065 4.62591 4.69387 4.74264 4.84220 4.89908 4.92987 5.12365 5.23149 5.28650 5.36719 5.41605 5.46451 5.50708 5.54245 5.60010 5.65760 5.70438 5.80600 5.89541 5.93229 5.95542 5.99748 6.25656 6.26401 6.34662 6.45477 6.53067 6.63048 6.66085 7.31048 7.57915 7.59938 7.62799 7.85822 7.97789 8.10562 8.36094 9.22111 9.82507 10.47203 11.39295 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.003013 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.451725 B = 9290.595808 C =10746.755114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.137 3.863 5 C -0.150 4.150 6 C -0.080 4.080 7 C -0.118 4.118 8 C 0.086 3.914 9 C 0.570 3.430 10 O -0.535 6.535 11 N -0.705 5.705 12 C 0.102 3.898 13 C 0.106 3.894 14 O -0.544 6.544 15 C -0.128 4.128 16 C 0.156 3.844 17 N -0.599 5.599 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.916 3.084 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.117 3.883 27 N -0.456 5.456 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.410 0.590 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.366 0.634 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.018 0.982 46 H 0.253 0.747 47 H 0.030 0.970 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 21.851 11.448 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.205 4.205 4 C -0.003 4.003 5 C -0.170 4.170 6 C -0.106 4.106 7 C -0.139 4.139 8 C -0.052 4.052 9 C 0.354 3.646 10 O -0.412 6.412 11 N -0.356 5.356 12 C -0.022 4.022 13 C 0.064 3.936 14 O -0.348 6.348 15 C -0.167 4.167 16 C 0.032 3.968 17 N -0.326 5.326 18 C -0.353 4.353 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.746 3.254 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C -0.010 4.010 27 N -0.168 5.168 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.247 0.753 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.212 0.788 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.420 20.095 11.079 23.578 hybrid contribution -1.102 1.274 0.213 1.697 sum 4.319 21.368 11.292 24.551 Atomic orbital electron populations 1.21816 0.93278 1.02812 1.02160 1.20099 0.96455 0.95345 0.94842 1.21933 1.01359 0.94787 1.02430 1.21270 0.94662 0.89264 0.95131 1.22217 0.99786 1.01763 0.93215 1.21623 0.95896 0.93970 0.99078 1.22120 0.98244 0.95058 0.98501 1.21145 0.99130 0.94518 0.90419 1.17860 0.78165 0.85201 0.83336 1.90786 1.46348 1.66178 1.37881 1.45867 1.65800 1.11651 1.12298 1.22193 1.01753 0.80236 0.98039 1.22548 0.89743 0.95692 0.85602 1.86605 1.61256 1.22942 1.64015 1.23057 1.01447 0.89958 1.02219 1.21941 0.86005 0.97604 0.91272 1.44402 1.10100 1.17346 1.60712 1.19019 0.87146 1.03042 1.26111 0.90595 1.24789 0.98211 0.96960 1.00574 1.69781 1.32254 1.09987 1.44918 0.86140 0.83407 0.77035 0.78826 1.21205 1.21523 1.21159 1.21908 0.91772 0.92380 0.94945 1.67361 1.09459 1.09063 1.30874 0.92611 0.91591 0.91916 0.88748 0.91563 0.92225 0.92304 0.84145 0.84041 0.83428 0.75336 0.90436 0.90043 0.78775 0.91034 0.90566 0.87427 0.96377 0.93609 0.95206 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 3 C -0.15 -0.81 8.62 37.16 0.32 -0.49 16 4 C 0.14 1.31 5.79 -82.60 -0.48 0.84 16 5 C -0.15 -1.14 9.18 -39.32 -0.36 -1.50 16 6 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 7 C -0.12 -1.23 9.63 -39.05 -0.38 -1.61 16 8 C 0.09 1.09 6.75 -83.01 -0.56 0.53 16 9 C 0.57 8.45 7.81 -12.18 -0.10 8.35 16 10 O -0.54 -9.22 16.32 5.35 0.09 -9.13 16 11 N -0.70 -10.02 5.12 -61.14 -0.31 -10.34 16 12 C 0.10 1.57 4.80 -4.04 -0.02 1.55 16 13 C 0.11 1.88 0.93 -88.79 -0.08 1.80 16 14 O -0.54 -9.45 13.10 -35.23 -0.46 -9.92 16 15 C -0.13 -2.50 6.26 -24.58 -0.15 -2.66 16 16 C 0.16 3.90 5.88 -2.53 -0.01 3.89 16 17 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 18 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 22 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.12 2.43 5.76 -3.07 -0.02 2.42 16 27 N -0.46 -5.44 9.45 -6.06 -0.06 -5.50 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.26 6.48 -51.93 -0.34 -0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.14 0.69 6.30 -52.49 -0.33 0.35 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 38 H 0.41 5.48 6.80 -40.82 -0.28 5.21 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 41 H 0.37 4.98 8.44 45.56 0.38 5.36 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.41 7.96 -51.93 -0.41 0.99 16 44 H 0.11 2.97 5.87 -51.93 -0.31 2.67 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.03 0.63 7.82 -51.93 -0.41 0.22 16 48 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -33.59 389.01 -9.06 -42.66 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.70 Total: 8.03 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.44 Total: 3.84 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.39 Total: -58.52 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.37 Total: -19.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.59 -9.06 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271168264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.414 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds