Wall clock time and date at job start Tue Mar 31 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 C 1.50702 * 109.47468 * 120.00317 * 2 1 3 5 5 C 1.38605 * 119.54694 * 275.00179 * 4 2 1 6 6 C 1.38581 * 119.35145 * 179.97438 * 5 4 2 7 7 C 1.38636 * 118.48664 * 359.97438 * 6 5 4 8 8 C 1.39265 * 119.06122 * 0.02562 * 7 6 5 9 9 C 1.48165 * 119.72096 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00145 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00164 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00405 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47139 * 180.02562 * 12 11 9 14 14 O 1.42898 * 110.88633 * 303.87721 * 13 12 11 15 15 C 1.55152 * 111.00408 * 179.97438 * 13 12 11 16 16 C 1.54318 * 102.94511 * 206.38522 * 15 13 12 17 17 N 1.47022 * 107.27253 * 22.18990 * 16 15 13 18 18 C 1.36933 * 125.65341 * 181.02674 * 17 16 15 19 19 H 1.08006 * 120.00444 * 153.90406 * 18 17 16 20 20 C 1.38817 * 119.99751 * 333.90252 * 18 17 16 21 21 N 1.31616 * 120.00100 * 145.63931 * 20 18 17 22 22 Si 1.86797 * 119.99742 * 325.63468 * 20 18 17 23 23 H 1.48495 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46991 * 120.00404 * 22 20 18 25 25 H 1.48502 * 109.47132 * 239.99993 * 22 20 18 26 26 C 1.47424 * 108.69946 * 1.29134 * 17 16 15 27 27 N 1.31488 * 119.55108 * 95.25050 * 4 2 1 28 28 H 1.09005 * 109.47471 * 299.99375 * 1 2 3 29 29 H 1.09002 * 109.47708 * 59.99967 * 1 2 3 30 30 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47007 * 240.00374 * 2 1 3 32 32 H 1.09001 * 109.47292 * 60.00306 * 3 2 1 33 33 H 1.08997 * 109.47476 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47537 * 300.00277 * 3 2 1 35 35 H 1.08000 * 120.32172 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.75831 * 180.02562 * 6 5 4 37 37 H 1.07996 * 120.46841 * 180.02562 * 7 6 5 38 38 H 0.97005 * 119.99678 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47372 * 59.99647 * 12 11 9 40 40 H 1.09001 * 109.46705 * 299.99729 * 12 11 9 41 41 H 0.96701 * 113.99994 * 56.12246 * 14 13 12 42 42 H 1.09001 * 110.72609 * 88.01809 * 15 13 12 43 43 H 1.09005 * 110.87055 * 324.81764 * 15 13 12 44 44 H 1.09006 * 109.88476 * 262.77823 * 16 15 13 45 45 H 1.08998 * 109.88900 * 141.61115 * 16 15 13 46 46 H 0.97006 * 120.00091 * 5.05677 * 21 20 18 47 47 H 1.09000 * 110.36988 * 94.48149 * 26 17 16 48 48 H 1.09005 * 110.36594 * 216.80532 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1611 -0.0100 2.4195 6 6 2.6230 -0.6674 3.5486 7 6 2.9414 -2.0129 3.4465 8 6 2.7874 -2.6532 2.2194 9 6 3.1239 -4.0907 2.0936 10 8 3.5327 -4.7057 3.0586 11 7 2.9764 -4.7162 0.9089 12 6 3.3086 -6.1376 0.7846 13 6 3.0538 -6.5972 -0.6523 14 8 1.7048 -6.3303 -1.0409 15 6 3.3953 -8.1008 -0.8241 16 6 3.7451 -8.2068 -2.3234 17 7 4.1262 -6.8618 -2.7789 18 6 4.4884 -6.5243 -4.0555 19 1 4.3467 -5.5132 -4.4077 20 6 5.0379 -7.4818 -4.8972 21 7 4.7821 -7.4483 -6.1878 22 14 6.1404 -8.8178 -4.1979 23 1 6.2693 -8.6352 -2.7299 24 1 5.5455 -10.1487 -4.4804 25 1 7.4826 -8.7319 -4.8276 26 6 4.0599 -5.9380 -1.6319 27 7 2.3473 -1.9851 1.1601 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.9032 1.0377 2.4658 36 1 2.7317 -0.1439 4.4869 37 1 3.3038 -2.5567 4.3063 38 1 2.6504 -4.2252 0.1385 39 1 2.6872 -6.7170 1.4674 40 1 4.3592 -6.2882 1.0330 41 1 1.4457 -5.4030 -0.9509 42 1 2.5325 -8.7223 -0.5845 43 1 4.2510 -8.3776 -0.2081 44 1 2.8769 -8.5553 -2.8829 45 1 4.5787 -8.8952 -2.4620 46 1 4.2706 -6.7138 -6.5620 47 1 5.0401 -5.8420 -1.1649 48 1 3.6938 -4.9622 -1.9514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271168265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:18 Heat of formation + Delta-G solvation = -26.875719 kcal Electronic energy + Delta-G solvation = -28875.323671 eV Core-core repulsion = 24930.849092 eV Total energy + Delta-G solvation = -3944.474580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05578 -39.64672 -38.49488 -35.89101 -35.32515 -34.27411 -32.95227 -32.32353 -30.78950 -29.89877 -28.52177 -27.59221 -26.14287 -24.60185 -24.24835 -23.04921 -21.42652 -20.69182 -20.17637 -20.02927 -18.35390 -17.47913 -17.18703 -16.77047 -16.05510 -15.68795 -15.59211 -15.26908 -14.93697 -14.74006 -14.51773 -14.20797 -14.15527 -13.67990 -13.51032 -13.43385 -13.11905 -13.02149 -12.88070 -12.72736 -12.35319 -12.23100 -11.83010 -11.77058 -11.55671 -11.29076 -11.28399 -11.12405 -10.81216 -10.60287 -10.56123 -10.30854 -10.29494 -9.79112 -9.72564 -9.53423 -9.40360 -9.25481 -9.12479 -8.22158 -7.03300 -6.28802 -3.22618 0.33834 0.85005 2.52619 2.90384 3.48479 3.54831 3.55420 3.64410 3.69681 4.19958 4.34985 4.42818 4.58431 4.62034 4.65954 4.67393 4.70151 4.81127 4.89360 5.00389 5.07209 5.15274 5.24991 5.27378 5.32726 5.43461 5.46456 5.50262 5.55763 5.66321 5.69598 5.74855 5.78317 5.87511 5.90954 5.92226 6.11481 6.19731 6.21490 6.27234 6.43352 6.46903 6.75282 6.91363 7.22187 7.52498 7.83895 7.93481 8.02082 8.39997 9.03782 9.63249 10.36884 11.08275 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002932 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.236194 B = 9547.442231 C =10718.927597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.148 4.148 4 C 0.138 3.862 5 C -0.149 4.149 6 C -0.080 4.080 7 C -0.118 4.118 8 C 0.085 3.915 9 C 0.572 3.428 10 O -0.534 6.534 11 N -0.705 5.705 12 C 0.101 3.899 13 C 0.103 3.897 14 O -0.537 6.537 15 C -0.114 4.114 16 C 0.128 3.872 17 N -0.595 5.595 18 C -0.341 4.341 19 H 0.065 0.935 20 C -0.005 4.005 21 N -0.902 5.902 22 Si 1.049 2.951 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.298 1.298 26 C 0.110 3.890 27 N -0.456 5.456 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.367 0.633 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.031 0.969 46 H 0.266 0.734 47 H 0.028 0.972 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 16.801 19.738 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.206 4.206 4 C -0.003 4.003 5 C -0.169 4.169 6 C -0.105 4.105 7 C -0.139 4.139 8 C -0.053 4.053 9 C 0.357 3.643 10 O -0.411 6.411 11 N -0.357 5.357 12 C -0.023 4.023 13 C 0.061 3.939 14 O -0.341 6.341 15 C -0.152 4.152 16 C 0.003 3.997 17 N -0.322 5.322 18 C -0.468 4.468 19 H 0.083 0.917 20 C -0.209 4.209 21 N -0.540 5.540 22 Si 0.880 3.120 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.226 1.226 26 C -0.016 4.016 27 N -0.168 5.168 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.213 0.787 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.570 13.862 18.993 24.414 hybrid contribution -0.748 2.714 0.984 2.983 sum -7.319 16.576 19.977 26.971 Atomic orbital electron populations 1.21808 0.93327 1.02607 1.02190 1.20106 0.96381 0.95471 0.94889 1.21933 1.01500 0.94700 1.02426 1.21270 0.94584 0.89283 0.95116 1.22227 0.99702 1.01751 0.93206 1.21628 0.95839 0.93968 0.99111 1.22117 0.98164 0.95087 0.98518 1.21110 0.99362 0.94439 0.90403 1.17842 0.78065 0.85220 0.83221 1.90786 1.46181 1.66161 1.37942 1.45790 1.66121 1.11534 1.12253 1.22096 1.02137 0.80288 0.97734 1.22695 0.83335 0.97472 0.90398 1.86604 1.27505 1.30797 1.89226 1.22566 1.01226 0.92792 0.98640 1.21585 0.97805 0.89202 0.91132 1.44527 1.78868 1.03681 1.05148 1.19744 1.41177 0.99526 0.86402 0.91735 1.26059 0.98505 1.01683 0.94641 1.70917 1.39853 1.29700 1.13539 0.84033 0.77125 0.75746 0.75084 1.20571 1.21877 1.22581 1.22286 0.95312 0.94586 0.89445 1.67355 1.09575 1.09205 1.30672 0.92612 0.91575 0.92079 0.88668 0.92239 0.92225 0.91505 0.84097 0.84002 0.83422 0.75402 0.90391 0.89997 0.78678 0.90238 0.90107 0.94235 0.95160 0.92389 0.95397 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.18 37.15 0.34 -0.60 16 2 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 3 C -0.15 -0.84 8.62 37.16 0.32 -0.52 16 4 C 0.14 1.28 5.79 -82.60 -0.48 0.80 16 5 C -0.15 -1.09 9.18 -39.32 -0.36 -1.45 16 6 C -0.08 -0.58 10.17 -39.31 -0.40 -0.98 16 7 C -0.12 -1.17 9.63 -39.05 -0.38 -1.55 16 8 C 0.09 1.03 6.75 -83.01 -0.56 0.47 16 9 C 0.57 8.05 7.81 -12.18 -0.10 7.95 16 10 O -0.53 -8.75 16.32 5.35 0.09 -8.67 16 11 N -0.71 -9.42 5.19 -61.15 -0.32 -9.73 16 12 C 0.10 1.44 4.89 -4.04 -0.02 1.43 16 13 C 0.10 1.72 0.97 -88.35 -0.09 1.64 16 14 O -0.54 -9.08 13.21 -35.23 -0.47 -9.55 16 15 C -0.11 -1.98 6.15 -24.90 -0.15 -2.14 16 16 C 0.13 2.88 6.04 -3.07 -0.02 2.86 16 17 N -0.60 -14.92 3.05 -169.93 -0.52 -15.43 16 18 C -0.34 -9.91 10.24 -15.06 -0.15 -10.06 16 19 H 0.06 1.99 8.06 -52.48 -0.42 1.56 16 20 C -0.01 -0.15 5.29 -17.43 -0.09 -0.24 16 21 N -0.90 -28.21 13.70 55.49 0.76 -27.45 16 22 Si 1.05 26.58 26.22 -169.99 -4.46 22.12 16 23 H -0.28 -6.65 6.18 56.52 0.35 -6.30 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 26 C 0.11 2.23 6.22 -2.41 -0.02 2.22 16 27 N -0.46 -5.25 9.45 -6.06 -0.06 -5.31 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.26 6.48 -51.93 -0.34 -0.08 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.14 0.65 6.30 -52.49 -0.33 0.32 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.15 1.38 7.64 -52.49 -0.40 0.98 16 38 H 0.41 5.14 6.61 -40.82 -0.27 4.87 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.37 4.96 7.69 45.56 0.35 5.31 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.71 3.85 -51.93 -0.20 0.51 16 46 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 47 H 0.03 0.57 7.99 -51.93 -0.41 0.16 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -35.06 386.65 -8.30 -43.36 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.72 Total: 5.69 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.44 Total: -0.85 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.13 Total: -57.93 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.38 Total: -18.22 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -4.46 Total: 22.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.06 -8.30 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271168265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.486 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds