Wall clock time and date at job start Tue Mar 31 2020 17:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47138 * 2 1 4 4 C 1.38365 * 120.26698 * 270.02335 * 3 2 1 5 5 N 1.31878 * 121.18144 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.80193 * 359.64786 * 5 4 3 7 7 O 1.35428 * 119.80071 * 180.31774 * 6 5 4 8 8 C 1.40281 * 120.40088 * 0.63814 * 6 5 4 9 9 C 1.47522 * 120.59963 * 179.68207 * 8 6 5 10 10 O 1.21590 * 120.00066 * 45.62036 * 9 8 6 11 11 N 1.34776 * 119.99900 * 225.62531 * 9 8 6 12 12 C 1.47028 * 125.64847 * 355.18937 * 11 9 8 13 13 C 1.54322 * 107.27193 * 178.90455 * 12 11 9 14 14 C 1.55160 * 102.94336 * 337.80627 * 13 12 11 15 15 H 1.09000 * 111.03779 * 277.41551 * 14 13 12 16 16 C 1.52999 * 111.00555 * 153.57492 * 14 13 12 17 17 H 1.09001 * 109.46871 * 306.35407 * 16 14 13 18 18 C 1.53000 * 109.47194 * 66.35106 * 16 14 13 19 19 N 1.46493 * 109.47316 * 186.35207 * 16 14 13 20 20 C 1.36939 * 120.00174 * 154.99797 * 19 16 14 21 21 H 1.07993 * 119.99614 * 0.27936 * 20 19 16 22 22 C 1.38812 * 119.99747 * 180.02562 * 20 19 16 23 23 N 1.31613 * 120.00501 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47511 * 59.99559 * 24 22 20 26 26 H 1.48500 * 109.47275 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47101 * 299.99519 * 24 22 20 28 28 C 1.47422 * 125.64909 * 175.14880 * 11 9 8 29 29 C 1.38327 * 120.27467 * 89.99472 * 3 2 1 30 30 H 1.09004 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47458 * 300.00166 * 1 2 3 32 32 H 1.09003 * 109.47158 * 60.00375 * 1 2 3 33 33 H 1.08998 * 109.47458 * 239.99833 * 2 1 3 34 34 H 1.09003 * 109.47158 * 119.99625 * 2 1 3 35 35 H 1.07999 * 119.40608 * 359.97438 * 4 3 2 36 36 H 0.96699 * 113.99661 * 270.31489 * 7 6 5 37 37 H 1.08999 * 109.87898 * 298.32333 * 12 11 9 38 38 H 1.09006 * 109.88216 * 59.48820 * 12 11 9 39 39 H 1.09001 * 110.72331 * 219.44583 * 13 12 11 40 40 H 1.09002 * 110.72182 * 96.16937 * 13 12 11 41 41 H 1.09000 * 109.47263 * 59.99903 * 18 16 14 42 42 H 1.08999 * 109.47338 * 180.02562 * 18 16 14 43 43 H 1.09000 * 109.46679 * 300.00412 * 18 16 14 44 44 H 0.97003 * 119.99979 * 335.00253 * 19 16 14 45 45 H 0.97005 * 120.00546 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.36559 * 85.32713 * 28 11 9 47 47 H 1.09002 * 110.45740 * 323.04780 * 28 11 9 48 48 H 1.08001 * 120.82384 * 0.05157 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0785 -1.1950 5 7 2.7043 3.3216 -1.2161 6 6 2.9370 3.9974 -0.1035 7 8 3.3824 5.2744 -0.1725 8 6 2.7316 3.3973 1.1477 9 6 2.9964 4.1448 2.3916 10 8 2.5984 5.2876 2.5106 11 7 3.6796 3.5611 3.3961 12 6 4.1296 2.1618 3.4266 13 6 4.8898 1.9537 4.7534 14 6 5.3144 3.3951 5.1403 15 1 6.2249 3.6883 4.6178 16 6 5.4877 3.5279 6.6547 17 1 4.5808 3.1886 7.1552 18 6 6.6717 2.6723 7.1095 19 7 5.7387 4.9301 6.9964 20 6 5.4272 5.3968 8.2455 21 1 5.0005 4.7301 8.9801 22 6 5.6646 6.7257 8.5690 23 7 6.1887 7.5372 7.6752 24 14 5.2402 7.3622 10.2732 25 1 6.0091 6.6022 11.2912 26 1 5.5873 8.8032 10.3640 27 1 3.7861 7.1874 10.5189 28 6 4.1001 4.2203 4.6459 29 6 2.2647 2.0784 1.1946 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0826 1.5644 -2.1272 36 1 4.3458 5.3542 -0.1951 37 1 3.2688 1.4945 3.3840 38 1 4.7939 1.9676 2.5844 39 1 5.7647 1.3216 4.6016 40 1 4.2325 1.5286 5.5119 41 1 7.5786 3.0114 6.6089 42 1 6.7949 2.7665 8.1884 43 1 6.4849 1.6289 6.8552 44 1 6.1256 5.5280 6.3378 45 1 6.3549 8.4657 7.9014 46 1 3.2956 4.1888 5.3806 47 1 4.3958 5.2513 4.4520 48 1 2.0914 1.5860 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271539694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:52 Heat of formation + Delta-G solvation = -29.641191 kcal Electronic energy + Delta-G solvation = -28897.665245 eV Core-core repulsion = 24953.070746 eV Total energy + Delta-G solvation = -3944.594499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18614 -39.62357 -37.88434 -37.40308 -35.23480 -34.62539 -33.00284 -32.18212 -30.50256 -29.47546 -28.67242 -28.15633 -25.31321 -24.44632 -23.97675 -23.25855 -22.03766 -21.48151 -19.70073 -19.60062 -18.90748 -17.58176 -17.43968 -16.91481 -16.34182 -15.86487 -15.65383 -15.18166 -14.73290 -14.39881 -14.23592 -14.06286 -13.73068 -13.69683 -13.56540 -13.50769 -13.02965 -12.74437 -12.67869 -12.43096 -12.21784 -12.15360 -12.03585 -11.74545 -11.68304 -11.48164 -11.36365 -10.89393 -10.78636 -10.63274 -10.58263 -10.27937 -10.23648 -10.12991 -9.90805 -9.63024 -9.57950 -9.09246 -8.90964 -8.55747 -6.96850 -5.75348 -3.04760 0.39691 0.74728 2.62984 2.88988 3.21248 3.44895 3.45433 3.49490 3.50709 4.11173 4.24769 4.37771 4.42617 4.54487 4.60852 4.62525 4.84789 4.87066 4.91512 4.95421 5.10865 5.23462 5.27075 5.33600 5.40191 5.47838 5.54065 5.54724 5.61557 5.76385 5.80726 5.83814 5.85158 5.88822 6.00431 6.06998 6.13408 6.27618 6.33476 6.36037 6.53246 6.59884 6.82052 7.04391 7.24252 7.49675 7.55742 7.69937 8.15425 8.42496 9.53875 10.10137 10.44403 11.47028 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002672 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.073513 B =10475.901670 C =11270.858352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.142 3.858 5 N -0.501 5.501 6 C 0.354 3.646 7 O -0.464 6.464 8 C -0.183 4.183 9 C 0.572 3.428 10 O -0.510 6.510 11 N -0.614 5.614 12 C 0.098 3.902 13 C -0.124 4.124 14 C -0.102 4.102 15 H 0.081 0.919 16 C 0.185 3.815 17 H 0.049 0.951 18 C -0.164 4.164 19 N -0.724 5.724 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.121 3.879 29 C -0.033 4.033 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -20.243 -17.363 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.154 4.154 4 C -0.016 4.016 5 N -0.219 5.219 6 C 0.175 3.825 7 O -0.271 6.271 8 C -0.189 4.189 9 C 0.359 3.641 10 O -0.385 6.385 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.163 4.163 14 C -0.122 4.122 15 H 0.099 0.901 16 C 0.075 3.925 17 H 0.067 0.933 18 C -0.224 4.224 19 N -0.365 5.365 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.000 4.000 29 C -0.059 4.059 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.261 0.739 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.753 -18.874 -17.937 26.899 hybrid contribution 0.337 0.162 1.498 1.544 sum -6.416 -18.711 -16.439 25.720 Atomic orbital electron populations 1.21791 0.94346 1.02133 1.02506 1.20461 0.96374 0.91084 1.03594 1.20858 1.02303 0.98590 0.93602 1.22604 0.92412 0.88763 0.97828 1.67304 1.14615 1.08722 1.31245 1.19108 0.92878 0.84248 0.86268 1.84807 1.27756 1.19149 1.95380 1.21080 1.07677 0.95399 0.94767 1.17471 0.78805 0.85931 0.81925 1.90887 1.49814 1.17332 1.80419 1.48525 1.55258 1.12267 1.18785 1.22212 0.98239 0.82766 0.99289 1.22695 1.00124 0.97963 0.95502 1.22683 0.97446 0.93367 0.98662 0.90091 1.20150 0.95842 0.87116 0.89430 0.93301 1.22442 1.00218 0.97869 1.01864 1.42405 1.75581 1.04656 1.13906 1.19139 1.34699 0.93426 0.89871 0.91293 1.24728 1.01743 0.96420 0.97854 1.69638 1.49455 1.05175 1.33634 0.86303 0.78064 0.77821 0.84182 1.21352 1.21730 1.21276 1.22293 0.96431 0.97830 0.83417 1.21721 0.93258 0.91751 0.99148 0.91935 0.92429 0.92379 0.90303 0.90460 0.81993 0.73852 0.91691 0.91692 0.89976 0.90213 0.93520 0.92740 0.94439 0.78262 0.93427 0.90832 0.89652 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.08 -0.36 6.08 -27.88 -0.17 -0.53 16 3 C -0.15 -1.15 5.14 -104.54 -0.54 -1.68 16 4 C 0.14 1.21 10.84 -17.48 -0.19 1.02 16 5 N -0.50 -5.98 10.37 -12.98 -0.13 -6.12 16 6 C 0.35 4.71 7.74 -16.61 -0.13 4.58 16 7 O -0.46 -6.40 12.52 -29.91 -0.37 -6.78 16 8 C -0.18 -2.33 5.46 -104.69 -0.57 -2.91 16 9 C 0.57 9.10 7.19 -12.48 -0.09 9.01 16 10 O -0.51 -10.51 16.70 -6.65 -0.11 -10.63 16 11 N -0.61 -8.68 3.33 -171.74 -0.57 -9.25 16 12 C 0.10 0.98 5.61 -3.06 -0.02 0.96 16 13 C -0.12 -1.30 5.59 -24.90 -0.14 -1.44 16 14 C -0.10 -1.50 2.62 -88.46 -0.23 -1.73 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.18 3.34 2.40 -67.94 -0.16 3.18 16 17 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 18 C -0.16 -2.68 9.34 37.16 0.35 -2.34 16 19 N -0.72 -17.29 4.82 -53.43 -0.26 -17.55 16 20 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 C 0.12 2.03 6.07 -2.53 -0.02 2.02 16 29 C -0.03 -0.31 8.33 -38.89 -0.32 -0.63 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.40 3.65 9.06 45.56 0.41 4.06 16 37 H 0.06 0.51 5.95 -51.93 -0.31 0.20 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 44 H 0.38 9.89 7.80 -40.82 -0.32 9.58 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 47 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 48 H 0.15 1.11 5.86 -52.49 -0.31 0.80 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -35.29 393.28 -8.70 -44.00 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.77 Total: 8.27 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.11 Total: 2.10 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.24 Total: -60.26 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.49 Total: -17.40 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.29 -8.70 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.355 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds