Wall clock time and date at job start Tue Mar 31 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47138 * 2 1 4 4 C 1.38365 * 120.26698 * 270.02335 * 3 2 1 5 5 N 1.31878 * 121.18144 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.80193 * 359.64786 * 5 4 3 7 7 O 1.35428 * 119.80071 * 180.31774 * 6 5 4 8 8 C 1.40281 * 120.40088 * 0.63814 * 6 5 4 9 9 C 1.47522 * 120.59963 * 179.68207 * 8 6 5 10 10 O 1.21590 * 120.00066 * 45.62036 * 9 8 6 11 11 N 1.34776 * 119.99900 * 225.62531 * 9 8 6 12 12 C 1.47028 * 125.64847 * 355.18937 * 11 9 8 13 13 C 1.54322 * 107.27193 * 178.90455 * 12 11 9 14 14 C 1.55160 * 102.94336 * 337.80627 * 13 12 11 15 15 H 1.09000 * 111.03779 * 277.41551 * 14 13 12 16 16 C 1.52999 * 111.00555 * 153.57492 * 14 13 12 17 17 H 1.09001 * 109.46871 * 306.35407 * 16 14 13 18 18 C 1.53000 * 109.47194 * 66.35106 * 16 14 13 19 19 N 1.46493 * 109.47316 * 186.35207 * 16 14 13 20 20 C 1.36939 * 120.00174 * 154.99797 * 19 16 14 21 21 H 1.07993 * 119.99614 * 0.27936 * 20 19 16 22 22 C 1.38812 * 119.99747 * 180.02562 * 20 19 16 23 23 N 1.31613 * 120.00501 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47511 * 59.99559 * 24 22 20 26 26 H 1.48500 * 109.47275 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47101 * 299.99519 * 24 22 20 28 28 C 1.47422 * 125.64909 * 175.14880 * 11 9 8 29 29 C 1.38327 * 120.27467 * 89.99472 * 3 2 1 30 30 H 1.09004 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47458 * 300.00166 * 1 2 3 32 32 H 1.09003 * 109.47158 * 60.00375 * 1 2 3 33 33 H 1.08998 * 109.47458 * 239.99833 * 2 1 3 34 34 H 1.09003 * 109.47158 * 119.99625 * 2 1 3 35 35 H 1.07999 * 119.40608 * 359.97438 * 4 3 2 36 36 H 0.96699 * 113.99661 * 270.31489 * 7 6 5 37 37 H 1.08999 * 109.87898 * 298.32333 * 12 11 9 38 38 H 1.09006 * 109.88216 * 59.48820 * 12 11 9 39 39 H 1.09001 * 110.72331 * 219.44583 * 13 12 11 40 40 H 1.09002 * 110.72182 * 96.16937 * 13 12 11 41 41 H 1.09000 * 109.47263 * 59.99903 * 18 16 14 42 42 H 1.08999 * 109.47338 * 180.02562 * 18 16 14 43 43 H 1.09000 * 109.46679 * 300.00412 * 18 16 14 44 44 H 0.97003 * 119.99979 * 335.00253 * 19 16 14 45 45 H 0.97005 * 120.00546 * 180.02562 * 23 22 20 46 46 H 1.08995 * 110.36559 * 85.32713 * 28 11 9 47 47 H 1.09002 * 110.45740 * 323.04780 * 28 11 9 48 48 H 1.08001 * 120.82384 * 0.05157 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0785 -1.1950 5 7 2.7043 3.3216 -1.2161 6 6 2.9370 3.9974 -0.1035 7 8 3.3824 5.2744 -0.1725 8 6 2.7316 3.3973 1.1477 9 6 2.9964 4.1448 2.3916 10 8 2.5984 5.2876 2.5106 11 7 3.6796 3.5611 3.3961 12 6 4.1296 2.1618 3.4266 13 6 4.8898 1.9537 4.7534 14 6 5.3144 3.3951 5.1403 15 1 6.2249 3.6883 4.6178 16 6 5.4877 3.5279 6.6547 17 1 4.5808 3.1886 7.1552 18 6 6.6717 2.6723 7.1095 19 7 5.7387 4.9301 6.9964 20 6 5.4272 5.3968 8.2455 21 1 5.0005 4.7301 8.9801 22 6 5.6646 6.7257 8.5690 23 7 6.1887 7.5372 7.6752 24 14 5.2402 7.3622 10.2732 25 1 6.0091 6.6022 11.2912 26 1 5.5873 8.8032 10.3640 27 1 3.7861 7.1874 10.5189 28 6 4.1001 4.2203 4.6459 29 6 2.2647 2.0784 1.1946 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0826 1.5644 -2.1272 36 1 4.3458 5.3542 -0.1951 37 1 3.2688 1.4945 3.3840 38 1 4.7939 1.9676 2.5844 39 1 5.7647 1.3216 4.6016 40 1 4.2325 1.5286 5.5119 41 1 7.5786 3.0114 6.6089 42 1 6.7949 2.7665 8.1884 43 1 6.4849 1.6289 6.8552 44 1 6.1256 5.5280 6.3378 45 1 6.3549 8.4657 7.9014 46 1 3.2956 4.1888 5.3806 47 1 4.3958 5.2513 4.4520 48 1 2.0914 1.5860 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271539694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:51 Heat of formation + Delta-G solvation = -56.807891 kcal Electronic energy + Delta-G solvation = -28898.843282 eV Core-core repulsion = 24953.070746 eV Total energy + Delta-G solvation = -3945.772536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09843 -40.71015 -39.05785 -38.42077 -36.80570 -35.22526 -34.44198 -33.47309 -31.87870 -30.14056 -30.04738 -29.55120 -26.28940 -25.86743 -25.04958 -24.26968 -22.92524 -22.61478 -21.08534 -20.63278 -19.82688 -19.17045 -18.39213 -18.26258 -17.26281 -17.10936 -16.80531 -16.44404 -15.87547 -15.58000 -15.37548 -15.14398 -14.81703 -14.79212 -14.45994 -14.36536 -14.16618 -14.03278 -13.85294 -13.58153 -13.34465 -13.11816 -13.06271 -12.88616 -12.83342 -12.66737 -12.38398 -12.31542 -12.25714 -12.03848 -11.82027 -11.70449 -11.53445 -11.42655 -11.27418 -10.98186 -10.91378 -10.50338 -9.90112 -9.70030 -8.98312 -7.92163 -5.19552 -0.42937 0.00033 1.45654 1.48606 1.48788 1.54307 1.80924 2.39379 2.56738 2.62875 3.21786 3.41690 3.51187 3.62871 3.68645 3.73781 3.78997 3.87294 4.10224 4.19524 4.22884 4.28729 4.41102 4.51012 4.55204 4.55391 4.63598 4.64746 4.71561 4.83200 4.87525 4.88701 4.92770 4.98411 5.10437 5.11852 5.19333 5.21315 5.32860 5.35130 5.39029 5.42015 5.51428 5.54084 5.66752 6.29950 6.35602 6.45478 6.75398 6.95620 7.35801 8.14350 8.34539 9.31366 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002672 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.073513 B =10475.901670 C =11270.858352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.134 4.134 4 C 0.144 3.856 5 N -0.522 5.522 6 C 0.332 3.668 7 O -0.490 6.490 8 C -0.199 4.199 9 C 0.569 3.431 10 O -0.575 6.575 11 N -0.609 5.609 12 C 0.093 3.907 13 C -0.111 4.111 14 C -0.092 4.092 15 H 0.076 0.924 16 C 0.178 3.822 17 H 0.048 0.952 18 C -0.152 4.152 19 N -0.739 5.739 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.967 3.033 25 H -0.275 1.275 26 H -0.301 1.301 27 H -0.281 1.281 28 C 0.126 3.874 29 C -0.027 4.027 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.198 0.802 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.369 0.631 45 H 0.248 0.752 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -25.461 -18.108 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.135 4.135 4 C -0.014 4.014 5 N -0.240 5.240 6 C 0.153 3.847 7 O -0.300 6.300 8 C -0.206 4.206 9 C 0.358 3.642 10 O -0.455 6.455 11 N -0.342 5.342 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.112 4.112 15 H 0.095 0.905 16 C 0.070 3.930 17 H 0.066 0.934 18 C -0.212 4.212 19 N -0.378 5.378 20 C -0.363 4.363 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.797 3.203 25 H -0.201 1.201 26 H -0.227 1.227 27 H -0.207 1.207 28 C 0.003 3.997 29 C -0.053 4.053 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.261 -24.209 -18.673 31.424 hybrid contribution 0.439 1.623 1.634 2.345 sum -6.822 -22.585 -17.039 29.103 Atomic orbital electron populations 1.21812 0.94525 1.02900 1.01739 1.20575 0.95944 0.88873 1.05675 1.21202 1.00145 0.99875 0.92328 1.23323 0.90535 0.87657 0.99866 1.67342 1.15704 1.10290 1.30693 1.19272 0.94156 0.84211 0.87022 1.84755 1.29119 1.20551 1.95537 1.20831 1.10318 0.96808 0.92654 1.18039 0.77832 0.85374 0.82933 1.90841 1.52650 1.20308 1.81706 1.48559 1.54315 1.13972 1.17309 1.22567 0.99968 0.80351 0.99897 1.22745 1.01637 0.94723 0.95798 1.22499 0.96137 0.96530 0.96040 0.90547 1.20439 0.96530 0.84277 0.91723 0.93413 1.22269 0.98671 1.00027 1.00244 1.42663 1.75417 1.07102 1.12668 1.19561 1.32334 0.93425 0.90974 0.90480 1.25516 1.03177 0.97093 1.01401 1.69812 1.51997 1.04971 1.35556 0.85295 0.77977 0.76614 0.80418 1.20115 1.22716 1.20704 1.22006 0.96872 0.96322 0.84503 1.21963 0.92209 0.90147 1.00933 0.90442 0.93666 0.92791 0.87983 0.88734 0.78503 0.72522 0.88363 0.89608 0.86698 0.88867 0.94091 0.94831 0.89823 0.79955 0.94345 0.92723 0.94440 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.17 16 2 C -0.07 -0.30 6.08 29.85 0.18 -0.12 16 3 C -0.13 -1.51 5.14 -19.81 -0.10 -1.61 16 4 C 0.14 2.02 10.84 84.72 0.92 2.94 16 5 N -0.52 -11.96 10.37 -307.99 -3.19 -15.15 16 6 C 0.33 8.99 7.74 85.13 0.66 9.65 16 7 O -0.49 -14.65 12.52 -75.82 -0.95 -15.60 16 8 C -0.20 -5.04 5.46 -19.91 -0.11 -5.15 16 9 C 0.57 18.88 7.19 86.69 0.62 19.50 16 10 O -0.58 -25.80 16.70 7.41 0.12 -25.68 16 11 N -0.61 -17.21 3.33 -815.53 -2.71 -19.93 16 12 C 0.09 1.53 5.61 86.73 0.49 2.02 16 13 C -0.11 -1.86 5.59 31.78 0.18 -1.69 16 14 C -0.09 -2.64 2.62 -9.40 -0.02 -2.66 16 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.18 6.34 2.40 44.99 0.11 6.45 16 17 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 18 C -0.15 -4.65 9.34 71.98 0.67 -3.98 16 19 N -0.74 -36.33 4.82 -322.96 -1.56 -37.89 16 20 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 24 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 C 0.13 4.42 6.07 86.86 0.53 4.95 16 29 C -0.03 -0.43 8.33 22.72 0.19 -0.24 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.05 8.09 -2.39 -0.02 0.03 16 34 H 0.09 0.16 8.09 -2.39 -0.02 0.14 16 35 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.41 8.59 9.06 -74.06 -0.67 7.92 16 37 H 0.10 1.03 5.95 -2.39 -0.01 1.02 16 38 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.11 1.30 8.13 -2.39 -0.02 1.28 16 40 H 0.09 1.39 8.01 -2.39 -0.02 1.37 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.79 7.50 -2.39 -0.02 1.77 16 44 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 45 H 0.25 15.33 8.31 -92.70 -0.77 14.55 16 46 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 47 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 48 H 0.17 1.82 5.86 -2.91 -0.02 1.81 16 Total: -1.00 -84.39 393.28 -0.07 -84.46 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.41 Total: 27.77 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.32 Total: 13.80 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -7.18 Total: -133.94 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.83 Total: -41.28 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -84.39 -0.07 -84.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271539694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.651 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds