Wall clock time and date at job start Tue Mar 31 2020 17:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47439 * 2 1 4 4 N 1.46506 * 109.45724 * 305.44984 * 3 2 1 5 5 C 1.36934 * 120.00005 * 303.30617 * 4 3 2 6 6 H 1.08001 * 119.99883 * 354.73325 * 5 4 3 7 7 C 1.38809 * 119.99898 * 174.74321 * 5 4 3 8 8 N 1.31625 * 120.00379 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47260 * 89.99389 * 9 7 5 11 11 H 1.48499 * 109.46951 * 209.99453 * 9 7 5 12 12 H 1.48497 * 109.46691 * 329.99164 * 9 7 5 13 13 C 1.53039 * 109.46416 * 185.47982 * 3 2 1 14 14 C 1.53189 * 109.31347 * 178.60326 * 13 3 2 15 15 N 1.46920 * 108.76924 * 54.65134 * 14 13 3 16 16 C 1.34775 * 120.63157 * 126.40540 * 15 14 13 17 17 O 1.21611 * 120.00043 * 4.54469 * 16 15 14 18 18 C 1.47399 * 120.00186 * 184.54877 * 16 15 14 19 19 C 1.47109 * 128.56379 * 26.05927 * 18 16 15 20 20 N 1.30015 * 105.32775 * 179.89917 * 19 18 16 21 21 O 1.20661 * 112.30035 * 0.39594 * 20 19 18 22 22 C 1.33486 * 113.15694 * 359.73600 * 21 20 19 23 23 C 1.50703 * 126.82840 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.50041 * 8.61912 * 23 22 21 25 25 C 1.52999 * 60.00375 * 252.51115 * 24 23 22 26 26 C 1.46926 * 118.73618 * 306.38637 * 15 14 13 27 27 C 1.53035 * 109.46026 * 65.41888 * 3 2 1 28 28 H 1.08992 * 109.47352 * 303.04466 * 1 2 3 29 29 H 1.09000 * 109.46781 * 63.04441 * 1 2 3 30 30 H 1.08996 * 109.47243 * 183.03656 * 1 2 3 31 31 H 1.09005 * 109.47514 * 239.99591 * 2 1 3 32 32 H 1.09000 * 109.46847 * 119.99722 * 2 1 3 33 33 H 0.97004 * 119.99908 * 123.30548 * 4 3 2 34 34 H 0.96993 * 120.00461 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.49275 * 298.56461 * 13 3 2 36 36 H 1.08997 * 109.49867 * 58.65435 * 13 3 2 37 37 H 1.09004 * 109.59517 * 294.86411 * 14 13 3 38 38 H 1.09000 * 109.58243 * 174.43531 * 14 13 3 39 39 H 1.08000 * 127.33411 * 0.02562 * 19 18 16 40 40 H 1.09001 * 115.55417 * 154.32938 * 23 22 21 41 41 H 1.09000 * 117.49723 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.50182 * 145.02397 * 24 23 22 43 43 H 1.08998 * 117.50227 * 252.51008 * 25 24 23 44 44 H 1.09002 * 117.52222 * 107.47472 * 25 24 23 45 45 H 1.09002 * 109.58589 * 293.81571 * 26 15 14 46 46 H 1.09003 * 109.58600 * 173.39456 * 26 15 14 47 47 H 1.08999 * 109.50042 * 301.34271 * 27 3 2 48 48 H 1.09000 * 109.49474 * 61.43783 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4474 2.1697 -1.1253 5 6 1.6083 1.7034 -2.4027 6 1 2.2419 0.8490 -2.5899 7 6 0.9573 2.3291 -3.4571 8 7 0.1850 3.3702 -3.2289 9 14 1.1763 1.6926 -5.1996 10 1 0.1363 0.6727 -5.4885 11 1 1.0446 2.8191 -6.1582 12 1 2.5220 1.0802 -5.3374 13 6 3.5642 1.4444 -0.1378 14 6 4.0680 2.8907 -0.1725 15 7 3.5690 3.5937 1.0172 16 6 4.4186 4.2418 1.8385 17 8 5.5987 4.3188 1.5549 18 6 3.9175 4.8571 3.0807 19 6 2.7387 4.4844 3.8780 20 7 2.7205 5.3187 4.8750 21 8 3.6329 6.1069 4.8293 22 6 4.4323 5.9240 3.7761 23 6 5.6561 6.7283 3.4203 24 6 6.1571 7.7445 4.4485 25 6 5.4689 8.2260 3.1697 26 6 2.1262 3.5772 1.2942 27 6 1.6442 2.1232 1.3122 28 1 -0.3633 0.5603 0.8614 29 1 -0.3633 0.4658 -0.9160 30 1 -0.3633 -1.0262 0.0544 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.9410 2.9814 -0.9655 34 1 -0.2702 3.8071 -3.9656 35 1 4.0069 0.9250 0.7122 36 1 3.8467 0.9386 -1.0610 37 1 3.6984 3.3850 -1.0709 38 1 5.1580 2.8980 -0.1710 39 1 2.0389 3.6863 3.6788 40 1 6.4034 6.2074 2.8217 41 1 5.6017 7.8310 5.3824 42 1 7.2342 7.8923 4.5267 43 1 6.0932 8.6905 2.4064 44 1 4.4605 8.6295 3.2616 45 1 1.5983 4.1276 0.5154 46 1 1.9349 4.0376 2.2635 47 1 0.5598 2.1007 1.4210 48 1 2.1052 1.5974 2.1483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281047612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:25 Heat of formation + Delta-G solvation = 63.915929 kcal Electronic energy + Delta-G solvation = -30080.764447 eV Core-core repulsion = 26140.226888 eV Total energy + Delta-G solvation = -3940.537558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.03788 -41.35346 -39.44989 -38.30889 -36.36576 -34.98044 -34.37784 -32.75995 -32.09613 -31.53916 -30.80107 -27.13834 -25.88278 -25.31195 -25.02865 -24.24615 -23.33745 -22.87705 -22.09528 -20.56253 -19.76917 -18.93533 -18.87233 -18.59939 -17.87766 -17.12329 -16.68476 -16.54218 -16.11195 -15.84239 -15.58732 -15.40095 -15.12468 -14.87192 -14.67662 -14.56127 -14.28918 -13.79620 -13.40395 -13.35722 -13.02176 -12.86388 -12.81912 -12.70050 -12.55143 -12.45975 -12.30080 -12.20107 -12.15302 -12.07533 -11.79600 -11.55502 -11.51405 -11.42465 -11.37408 -11.13951 -10.81237 -10.74556 -10.29411 -9.63117 -8.82577 -7.83693 -5.07251 -0.04452 0.66351 1.48089 1.50299 1.55814 1.59353 1.86112 2.07614 2.62308 2.81383 3.11896 3.17047 3.40327 3.50867 3.64105 3.81874 3.84617 3.88260 3.97243 4.09271 4.14443 4.19408 4.26792 4.46551 4.48488 4.57864 4.61192 4.66839 4.69665 4.73832 4.78547 4.84477 4.89623 4.94089 5.05551 5.08887 5.14313 5.17275 5.19499 5.29037 5.37902 5.41210 5.53585 5.65670 5.69727 5.79509 6.37117 6.39755 6.99346 7.06303 7.47568 8.24454 8.47540 9.39650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003326 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.382180 B = 8415.607034 C = 9118.293134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.195 3.805 4 N -0.715 5.715 5 C -0.202 4.202 6 H 0.070 0.930 7 C -0.071 4.071 8 N -0.967 5.967 9 Si 0.948 3.052 10 H -0.295 1.295 11 H -0.305 1.305 12 H -0.275 1.275 13 C -0.128 4.128 14 C 0.131 3.869 15 N -0.586 5.586 16 C 0.596 3.404 17 O -0.573 6.573 18 C -0.274 4.274 19 C 0.028 3.972 20 N -0.365 5.365 21 O 0.091 5.909 22 C 0.084 3.916 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.152 4.152 26 C 0.091 3.909 27 C -0.128 4.128 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.373 0.627 34 H 0.244 0.756 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.235 0.765 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 3.981 17.989 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.105 3.895 4 N -0.356 5.356 5 C -0.334 4.334 6 H 0.088 0.912 7 C -0.263 4.263 8 N -0.619 5.619 9 Si 0.780 3.220 10 H -0.223 1.223 11 H -0.232 1.232 12 H -0.200 1.200 13 C -0.168 4.168 14 C 0.009 3.991 15 N -0.317 5.317 16 C 0.385 3.615 17 O -0.454 6.454 18 C -0.281 4.281 19 C -0.154 4.154 20 N -0.072 5.072 21 O 0.033 5.967 22 C 0.020 3.980 23 C -0.140 4.140 24 C -0.178 4.178 25 C -0.189 4.189 26 C -0.031 4.031 27 C -0.166 4.166 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.206 0.794 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.108 0.892 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.691 4.094 18.753 20.678 hybrid contribution -0.144 -0.500 -2.518 2.571 sum 7.546 3.593 16.235 18.260 Atomic orbital electron populations 1.21559 0.95969 1.00149 1.01370 1.21815 0.96337 0.96964 1.00540 1.19816 0.90607 0.91683 0.87393 1.42564 1.62929 1.28700 1.01373 1.19303 1.19849 1.09232 0.85042 0.91186 1.25216 1.01178 0.99520 1.00431 1.69767 1.36662 1.24738 1.30718 0.85495 0.77569 0.76591 0.82302 1.22251 1.23244 1.19993 1.22260 0.98247 0.94808 1.01531 1.21357 0.98613 0.92924 0.86189 1.47872 1.07959 1.50974 1.24875 1.17036 0.84936 0.77700 0.81853 1.90723 1.17293 1.61760 1.75643 1.21896 1.01192 1.03633 1.01388 1.26950 0.97378 1.00995 0.90035 1.73680 1.07189 1.04208 1.22113 1.84521 1.28415 1.44507 1.39240 1.24014 0.93223 0.94696 0.86086 1.20778 0.93423 0.91710 1.08081 1.23239 1.03014 0.97852 0.93736 1.23239 1.03564 0.91037 1.01073 1.22357 0.78988 0.98617 1.03092 1.22149 1.02460 0.94398 0.97571 0.92292 0.94679 0.93344 0.94168 0.90980 0.79376 0.94697 0.91089 0.92148 0.92813 0.90702 0.74922 0.84456 0.87056 0.85434 0.86040 0.88022 0.92499 0.86785 0.89239 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.46 71.98 0.68 -3.55 16 2 C -0.12 -3.64 4.65 30.59 0.14 -3.50 16 3 C 0.20 6.38 0.44 3.63 0.00 6.39 16 4 N -0.72 -30.75 3.32 -303.23 -1.01 -31.76 16 5 C -0.20 -10.05 8.29 84.03 0.70 -9.35 16 6 H 0.07 3.44 6.78 -2.91 -0.02 3.42 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 8 N -0.97 -56.24 13.06 21.65 0.28 -55.96 16 9 Si 0.95 45.16 29.55 68.60 2.03 47.18 16 10 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 11 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C -0.13 -4.15 4.76 30.67 0.15 -4.00 16 14 C 0.13 4.58 6.16 86.36 0.53 5.11 16 15 N -0.59 -18.18 2.97 -822.82 -2.45 -20.62 16 16 C 0.60 18.82 7.63 86.66 0.66 19.48 16 17 O -0.57 -21.02 15.10 -4.07 -0.06 -21.08 16 18 C -0.27 -7.20 5.98 -18.74 -0.11 -7.31 16 19 C 0.03 0.62 10.22 87.29 0.89 1.51 16 20 N -0.37 -8.63 12.01 -54.18 -0.65 -9.28 16 21 O 0.09 2.08 10.86 77.04 0.84 2.92 16 22 C 0.08 1.98 7.00 25.48 0.18 2.16 16 23 C -0.12 -2.38 5.96 -11.54 -0.07 -2.45 16 24 C -0.14 -1.78 10.18 30.59 0.31 -1.47 16 25 C -0.15 -2.23 10.23 30.60 0.31 -1.92 16 26 C 0.09 2.48 5.75 86.36 0.50 2.98 16 27 C -0.13 -3.26 4.76 30.67 0.15 -3.12 16 28 H 0.06 1.64 6.41 -2.39 -0.02 1.62 16 29 H 0.03 1.41 7.21 -2.39 -0.02 1.39 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.40 7.40 -2.38 -0.02 1.38 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.37 17.64 6.38 -92.70 -0.59 17.05 16 34 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.14 7.40 -2.39 -0.02 2.12 16 37 H 0.05 2.23 7.74 -2.38 -0.02 2.22 16 38 H 0.07 2.64 7.03 -2.39 -0.02 2.63 16 39 H 0.23 3.74 6.33 -2.91 -0.02 3.72 16 40 H 0.14 3.18 7.00 -2.39 -0.02 3.16 16 41 H 0.11 1.27 8.02 -2.39 -0.02 1.25 16 42 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.87 6.87 -2.39 -0.02 1.85 16 46 H 0.11 2.48 2.89 -2.39 -0.01 2.47 16 47 H 0.09 2.19 6.46 -2.39 -0.02 2.17 16 48 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.44 374.40 4.87 -59.56 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.41 Total: 31.48 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.49 Total: -2.45 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -3.82 Total: -117.62 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.78 Total: -18.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.44 4.87 -59.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281047612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.481 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds