Wall clock time and date at job start Tue Mar 31 2020 18:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 5 5 C 1.38028 * 119.51086 * 124.73052 * 4 3 2 6 6 C 1.39924 * 119.13313 * 179.73896 * 5 4 3 7 7 C 1.48158 * 120.89358 * 180.23925 * 6 5 4 8 8 O 1.21512 * 119.99748 * 0.29367 * 7 6 5 9 9 N 1.34775 * 120.00111 * 180.29059 * 7 6 5 10 10 C 1.46498 * 120.00331 * 179.97438 * 9 7 6 11 11 C 1.53778 * 113.61611 * 254.14026 * 10 9 7 12 12 C 1.54055 * 86.98457 * 270.83653 * 11 10 9 13 13 C 1.52998 * 113.61746 * 220.02423 * 12 11 10 14 14 N 1.46499 * 109.47033 * 272.49420 * 13 12 11 15 15 C 1.36936 * 120.00106 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99855 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99966 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46890 * 60.00600 * 19 17 15 21 21 H 1.48498 * 109.47387 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47300 * 300.00812 * 19 17 15 23 23 C 1.53775 * 113.61589 * 156.52697 * 10 9 7 24 24 C 1.39613 * 118.21147 * 0.52669 * 6 5 4 25 25 C 1.38855 * 118.95183 * 359.73299 * 24 6 5 26 26 O 1.35684 * 119.62041 * 179.97438 * 25 24 6 27 27 N 1.31870 * 119.51676 * 305.00679 * 4 3 2 28 28 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 32 32 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 33 33 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 34 34 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 35 35 H 1.08006 * 120.43052 * 359.97438 * 5 4 3 36 36 H 0.96998 * 119.99979 * 0.02562 * 9 7 6 37 37 H 1.09004 * 112.84544 * 25.33773 * 10 9 7 38 38 H 1.08999 * 113.61529 * 25.43234 * 11 10 9 39 39 H 1.09005 * 113.61386 * 156.33349 * 11 10 9 40 40 H 1.08996 * 113.68570 * 89.12765 * 12 11 10 41 41 H 1.08995 * 109.47472 * 32.49483 * 13 12 11 42 42 H 1.09000 * 109.47103 * 152.49452 * 13 12 11 43 43 H 0.97005 * 120.00178 * 359.97438 * 14 13 12 44 44 H 0.97001 * 119.99765 * 179.97438 * 18 17 15 45 45 H 1.08995 * 113.61923 * 203.66633 * 23 10 9 46 46 H 1.08996 * 113.61743 * 334.48872 * 23 10 9 47 47 H 1.08002 * 120.52420 * 179.71647 * 24 6 5 48 48 H 0.96699 * 114.00610 * 270.02713 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2273 2.1268 -0.9864 6 6 5.6265 2.1261 -0.9750 7 6 6.3960 2.8520 -2.0124 8 8 5.8122 3.4631 -2.8855 9 7 7.7434 2.8345 -1.9876 10 6 8.5043 3.5517 -3.0137 11 6 9.1532 2.6279 -4.0578 12 6 10.3749 2.5627 -3.1216 13 6 11.7149 2.6062 -3.8587 14 7 12.1089 1.2467 -4.2362 15 6 13.2823 1.0360 -4.9101 16 1 13.9174 1.8722 -5.1629 17 6 13.6559 -0.2523 -5.2673 18 7 12.8821 -1.2714 -4.9587 19 14 15.2561 -0.5396 -6.1872 20 1 16.3933 -0.0509 -5.3667 21 1 15.4225 -1.9917 -6.4495 22 1 15.2245 0.1956 -7.4770 23 6 9.9287 3.9285 -2.5735 24 6 6.2780 1.4180 0.0366 25 6 5.5170 0.7518 0.9880 26 8 6.1361 0.0590 1.9768 27 7 4.1963 0.7844 0.9409 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.6866 2.6589 -1.7552 36 1 8.2094 2.3464 -1.2909 37 1 7.9483 4.3815 -3.4502 38 1 8.6400 1.6735 -4.1754 39 1 9.3576 3.1196 -5.0089 40 1 10.3215 1.7589 -2.3874 41 1 11.6168 3.2182 -4.7552 42 1 12.4746 3.0368 -3.2063 43 1 11.5391 0.4955 -4.0082 44 1 13.1430 -2.1716 -5.2087 45 1 10.3449 4.7752 -3.1194 46 1 10.0409 4.0249 -1.4936 47 1 7.3568 1.3887 0.0783 48 1 6.3158 -0.8652 1.7566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328927807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:40 Heat of formation + Delta-G solvation = -21.024693 kcal Electronic energy + Delta-G solvation = -27463.937523 eV Core-core repulsion = 23519.716663 eV Total energy + Delta-G solvation = -3944.220860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25702 -40.08323 -38.42804 -37.65007 -35.29348 -34.63042 -33.57992 -32.54446 -31.05585 -30.78428 -27.34510 -27.03617 -25.57768 -25.05097 -23.33746 -23.24881 -22.05557 -21.47144 -20.71683 -19.26290 -19.08524 -17.57414 -17.23239 -17.03058 -16.16303 -15.96906 -15.77333 -15.36066 -15.16380 -14.87746 -14.73386 -14.45662 -14.11089 -13.93938 -13.76415 -13.38936 -13.19545 -12.82939 -12.71494 -12.50382 -12.41337 -12.19872 -12.10811 -11.79935 -11.71852 -11.53789 -11.07318 -11.05939 -10.83202 -10.63539 -10.42720 -10.39974 -10.26750 -10.14769 -9.89485 -9.79204 -9.63965 -9.23866 -9.15665 -8.86084 -6.92073 -5.77406 -3.05667 0.28433 0.53962 2.49922 2.74888 3.08663 3.38928 3.43253 3.47545 3.48596 3.97777 4.16636 4.49565 4.53049 4.55998 4.58898 4.66766 4.69781 4.75760 4.77812 4.95796 5.04109 5.06970 5.15042 5.22509 5.35852 5.38967 5.46354 5.56368 5.58084 5.65674 5.68819 5.79795 5.85080 5.87836 5.93003 5.95893 6.02395 6.05272 6.15994 6.23294 6.37190 6.54325 6.75184 6.89211 7.06083 7.21995 7.47175 7.68524 7.88322 8.41849 9.52772 10.11602 10.45938 11.45478 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.002021 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.425167 B =13850.547892 C =14479.451548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.070 4.070 4 C 0.153 3.847 5 C -0.124 4.124 6 C -0.066 4.066 7 C 0.561 3.439 8 O -0.526 6.526 9 N -0.698 5.698 10 C 0.114 3.886 11 C -0.138 4.138 12 C -0.114 4.114 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.137 4.137 24 C -0.161 4.161 25 C 0.316 3.684 26 O -0.479 6.479 27 N -0.485 5.485 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.146 0.854 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.176 6.346 12.909 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.108 4.108 4 C 0.015 3.985 5 C -0.145 4.145 6 C -0.076 4.076 7 C 0.347 3.653 8 O -0.403 6.403 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.176 4.176 12 C -0.132 4.132 13 C 0.035 3.965 14 N -0.376 5.376 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.176 4.176 24 C -0.183 4.183 25 C 0.137 3.863 26 O -0.287 6.287 27 N -0.205 5.205 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.216 0.784 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.164 0.836 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -22.843 6.885 13.137 27.236 hybrid contribution 1.705 -0.870 -0.844 2.092 sum -21.137 6.015 12.293 25.181 Atomic orbital electron populations 1.21783 0.95449 1.01895 1.01875 1.21451 0.95751 0.95336 1.02984 1.20663 0.87473 0.98902 1.03772 1.21000 0.96786 0.91745 0.88971 1.22143 0.93140 0.99233 0.99975 1.20283 0.94417 0.97645 0.95302 1.18059 0.82292 0.80589 0.84408 1.90788 1.69601 1.43086 1.36789 1.45597 1.05508 1.52946 1.30879 1.22023 0.91906 0.95685 0.89450 1.23466 0.96397 1.00035 0.97735 1.22820 0.95917 0.96409 0.98079 1.20636 0.91676 0.88947 0.95290 1.42333 1.24433 1.02190 1.68603 1.19203 0.97297 0.92422 1.28175 0.91271 1.24743 0.98880 0.95618 1.01845 1.69650 1.38151 0.98380 1.52153 0.86259 0.83379 0.76761 0.79741 1.21281 1.21702 1.21282 1.23314 0.93984 0.98967 1.01314 1.22324 1.01920 0.99956 0.94067 1.18933 0.86649 0.93779 0.86969 1.84798 1.76899 1.28167 1.38789 1.66780 1.09948 1.19575 1.24216 0.92635 0.92546 0.92595 0.92012 0.90790 0.89673 0.89535 0.83002 0.76204 0.88035 0.91238 0.88877 0.89449 0.96153 0.96365 0.78362 0.93507 0.88456 0.91155 0.83593 0.73729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.78 5.79 -26.73 -0.15 -0.94 16 3 C -0.07 -0.47 5.61 -27.88 -0.16 -0.63 16 4 C 0.15 1.42 6.17 -82.65 -0.51 0.91 16 5 C -0.12 -1.22 9.27 -39.03 -0.36 -1.58 16 6 C -0.07 -0.69 5.91 -104.68 -0.62 -1.31 16 7 C 0.56 6.91 7.80 -12.19 -0.10 6.82 16 8 O -0.53 -8.10 16.06 5.35 0.09 -8.01 16 9 N -0.70 -7.65 5.22 -53.87 -0.28 -7.93 16 10 C 0.11 1.37 4.29 -67.12 -0.29 1.08 16 11 C -0.14 -1.97 7.45 -25.78 -0.19 -2.16 16 12 C -0.11 -1.68 3.65 -89.66 -0.33 -2.01 16 13 C 0.16 3.14 6.10 -4.04 -0.02 3.12 16 14 N -0.73 -18.33 5.60 -59.91 -0.34 -18.66 16 15 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 17 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 19 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 C -0.14 -1.56 7.38 -25.92 -0.19 -1.75 16 24 C -0.16 -1.48 9.55 -38.84 -0.37 -1.85 16 25 C 0.32 3.13 7.74 -17.17 -0.13 3.00 16 26 O -0.48 -4.11 13.56 -18.76 -0.25 -4.37 16 27 N -0.49 -5.10 9.87 -9.60 -0.09 -5.19 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 33 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.15 1.37 7.62 -52.48 -0.40 0.97 16 36 H 0.40 3.60 6.84 -40.82 -0.28 3.32 16 37 H 0.10 1.27 7.50 -51.93 -0.39 0.89 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 45 H 0.10 1.05 8.10 -51.93 -0.42 0.62 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.15 1.05 6.53 -52.49 -0.34 0.71 16 48 H 0.40 1.59 9.06 45.56 0.41 2.00 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -34.67 400.65 -9.16 -43.83 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.72 Total: 9.54 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.30 Total: -5.15 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.01 Total: -59.27 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.17 Total: -12.38 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.67 -9.16 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328927807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.805 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds