Wall clock time and date at job start Tue Mar 31 2020 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 C 1.50703 * 109.46974 * 180.02562 * 3 2 1 5 5 C 1.38026 * 119.51068 * 125.00033 * 4 3 2 6 6 C 1.39929 * 119.12949 * 180.02562 * 5 4 3 7 7 C 1.48163 * 120.89089 * 179.97438 * 6 5 4 8 8 O 1.21510 * 120.00039 * 338.15965 * 7 6 5 9 9 N 1.34776 * 119.99835 * 158.16298 * 7 6 5 10 10 C 1.47420 * 125.65126 * 4.27962 * 9 7 6 11 11 C 1.54909 * 104.83626 * 204.09447 * 10 9 7 12 12 C 1.55164 * 101.57833 * 322.99236 * 11 10 9 13 13 C 1.47024 * 125.64826 * 184.24126 * 9 7 6 14 14 H 1.09000 * 109.88320 * 59.40004 * 13 9 7 15 15 C 1.53003 * 109.88002 * 298.39316 * 13 9 7 16 16 N 1.46502 * 109.47383 * 73.20785 * 15 13 9 17 17 C 1.36934 * 120.00314 * 187.54917 * 16 15 13 18 18 H 1.08001 * 119.99613 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00214 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47376 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46988 * 299.99943 * 21 19 17 24 24 H 1.48500 * 109.47254 * 59.99525 * 21 19 17 25 25 C 1.39614 * 118.21995 * 0.24994 * 6 5 4 26 26 C 1.38855 * 118.94441 * 359.50596 * 25 6 5 27 27 O 1.35690 * 119.62232 * 180.25121 * 26 25 6 28 28 N 1.31879 * 119.51268 * 305.02418 * 4 3 2 29 29 H 1.09001 * 109.47079 * 59.99702 * 1 2 3 30 30 H 1.08997 * 109.47774 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47195 * 299.99969 * 1 2 3 32 32 H 1.09002 * 109.46688 * 240.00159 * 2 1 3 33 33 H 1.09001 * 109.47079 * 120.00298 * 2 1 3 34 34 H 1.09002 * 109.47274 * 60.00517 * 3 2 1 35 35 H 1.09001 * 109.47451 * 300.00070 * 3 2 1 36 36 H 1.07999 * 120.43479 * 359.97438 * 5 4 3 37 37 H 1.09003 * 110.36535 * 322.93292 * 10 9 7 38 38 H 1.09007 * 110.36743 * 85.25511 * 10 9 7 39 39 H 1.09003 * 111.00650 * 81.05748 * 11 10 9 40 40 H 1.08994 * 111.01090 * 204.91817 * 11 10 9 41 41 H 1.09000 * 110.71650 * 277.13562 * 12 11 10 42 42 H 1.08998 * 110.71781 * 153.86601 * 12 11 10 43 43 H 1.09001 * 109.47332 * 313.20668 * 15 13 9 44 44 H 1.08998 * 109.47132 * 193.20968 * 15 13 9 45 45 H 0.97000 * 120.00135 * 7.54436 * 16 15 13 46 46 H 0.96996 * 120.00033 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.53123 * 179.74899 * 25 6 5 48 48 H 0.96702 * 113.99859 * 270.25241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2265 2.1316 -0.9848 6 6 5.6257 2.1258 -0.9781 7 6 6.3944 2.8518 -2.0159 8 8 5.8743 3.1199 -3.0809 9 7 7.6705 3.2148 -1.7788 10 6 8.4498 2.8782 -0.5736 11 6 9.5381 3.9770 -0.4852 12 6 9.8803 4.1976 -1.9825 13 6 8.5163 4.0115 -2.6798 14 1 8.0541 4.9820 -2.8604 15 6 8.7062 3.2712 -4.0052 16 7 7.4637 3.3289 -4.7793 17 6 7.3424 2.6039 -5.9346 18 1 8.1629 1.9898 -6.2754 19 6 6.1653 2.6590 -6.6682 20 7 5.1656 3.4077 -6.2531 21 14 6.0001 1.6705 -8.2447 22 1 4.6567 1.9000 -8.8344 23 1 7.0446 2.0992 -9.2094 24 1 6.1677 0.2261 -7.9432 25 6 6.2781 1.4127 0.0295 26 6 5.5179 0.7507 0.9844 27 8 6.1378 0.0577 1.9727 28 7 4.1970 0.7836 0.9388 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6853 2.6675 -1.7504 37 1 7.8120 2.9040 0.3100 38 1 8.9102 1.8961 -0.6816 39 1 9.1390 4.8872 -0.0376 40 1 10.4085 3.6215 0.0661 41 1 10.5954 3.4514 -2.3286 42 1 10.2628 5.2050 -2.1462 43 1 8.9625 2.2305 -3.8067 44 1 9.5096 3.7414 -4.5722 45 1 6.7268 3.8806 -4.4733 46 1 4.3429 3.4459 -6.7656 47 1 7.3569 1.3798 0.0679 48 1 6.3169 -0.8666 1.7522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499931126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:13 Heat of formation + Delta-G solvation = -27.640640 kcal Electronic energy + Delta-G solvation = -29514.804912 eV Core-core repulsion = 25570.297163 eV Total energy + Delta-G solvation = -3944.507749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07816 -40.82952 -38.63461 -38.15005 -36.40474 -35.76995 -34.05927 -33.07445 -32.31746 -31.62720 -30.33902 -28.00896 -26.74778 -26.02539 -24.54184 -23.89803 -23.14231 -22.32375 -21.81332 -20.42693 -19.58467 -19.05519 -18.11800 -17.54819 -17.47172 -17.03513 -16.72393 -16.48985 -15.89213 -15.85525 -15.54720 -15.21737 -14.96727 -14.81941 -14.64592 -14.44150 -14.20326 -13.79451 -13.72014 -13.33768 -13.28284 -13.07570 -13.03805 -12.89687 -12.71470 -12.67344 -12.36325 -12.31233 -12.09000 -12.02011 -11.87820 -11.64961 -11.59993 -11.51033 -11.00564 -10.90251 -10.86329 -10.36841 -9.90245 -9.59629 -8.77205 -7.79096 -5.06376 -0.37662 -0.14354 1.41153 1.45645 1.51562 1.84539 1.89361 2.37650 2.59227 2.71067 3.27119 3.39498 3.48323 3.61358 3.71441 3.85489 3.87063 4.00567 4.06761 4.14893 4.18960 4.22688 4.36175 4.38906 4.43333 4.52881 4.59672 4.68570 4.79259 4.80864 4.82999 4.84231 4.87506 4.95947 4.99002 5.01801 5.14023 5.15965 5.17941 5.31079 5.39026 5.39779 5.45878 5.48099 5.55325 6.37493 6.53569 6.54852 6.78879 7.22032 7.50935 8.35805 8.64188 9.42317 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.004511 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.305772 B = 6205.322905 C = 8929.573837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.069 4.069 4 C 0.154 3.846 5 C -0.143 4.143 6 C -0.063 4.063 7 C 0.536 3.464 8 O -0.504 6.504 9 N -0.608 5.608 10 C 0.077 3.923 11 C -0.119 4.119 12 C -0.113 4.113 13 C 0.130 3.870 14 H 0.051 0.949 15 C 0.141 3.859 16 N -0.735 5.735 17 C -0.247 4.247 18 H 0.062 0.938 19 C -0.073 4.073 20 N -0.952 5.952 21 Si 0.965 3.035 22 H -0.295 1.295 23 H -0.276 1.276 24 H -0.284 1.284 25 C -0.173 4.173 26 C 0.314 3.686 27 O -0.479 6.479 28 N -0.499 5.499 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.012 0.988 44 H 0.025 0.975 45 H 0.389 0.611 46 H 0.243 0.757 47 H 0.183 0.817 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -4.453 21.773 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.107 4.107 4 C 0.017 3.983 5 C -0.164 4.164 6 C -0.074 4.074 7 C 0.323 3.677 8 O -0.378 6.378 9 N -0.343 5.343 10 C -0.044 4.044 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.027 3.973 14 H 0.069 0.931 15 C 0.013 3.987 16 N -0.387 5.387 17 C -0.380 4.380 18 H 0.080 0.920 19 C -0.266 4.266 20 N -0.602 5.602 21 Si 0.795 3.205 22 H -0.221 1.221 23 H -0.202 1.202 24 H -0.211 1.211 25 C -0.194 4.194 26 C 0.134 3.866 27 O -0.289 6.289 28 N -0.219 5.219 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.030 0.970 44 H 0.043 0.957 45 H 0.230 0.770 46 H 0.052 0.948 47 H 0.200 0.800 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.036 -4.359 22.012 22.644 hybrid contribution -0.115 -0.311 -2.216 2.241 sum 2.922 -4.670 19.796 20.549 Atomic orbital electron populations 1.21759 0.94096 1.02364 1.02395 1.21382 0.96864 0.94721 1.01945 1.20731 0.86096 0.99441 1.04452 1.21176 0.97693 0.91044 0.88364 1.22170 0.93564 1.00603 1.00091 1.20258 0.94301 0.97917 0.94927 1.18430 0.81796 0.80645 0.86796 1.90960 1.68812 1.53610 1.24393 1.48415 1.10679 1.53780 1.21442 1.23097 0.94025 1.00176 0.87075 1.22829 0.98781 0.98423 0.95585 1.22641 0.92837 1.04384 0.95298 1.21933 0.92627 0.93135 0.89621 0.93053 1.21189 0.89474 0.96728 0.91276 1.43197 1.14736 1.55543 1.25193 1.19510 0.98435 1.20121 0.99901 0.91976 1.25490 0.96382 1.02279 1.02402 1.69946 1.04840 1.44760 1.40620 0.85349 0.76444 0.78437 0.80310 1.22118 1.20247 1.21100 1.23093 1.04024 0.99378 0.92906 1.19057 0.86550 0.93743 0.87233 1.84737 1.76532 1.29466 1.38141 1.66838 1.10559 1.19986 1.24554 0.92615 0.91984 0.91593 0.93447 0.91229 0.88252 0.89500 0.84979 0.88734 0.89446 0.90080 0.86158 0.89178 0.88265 0.96968 0.95694 0.76960 0.94839 0.79994 0.71654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.11 -2.27 5.79 30.59 0.18 -2.10 16 3 C -0.07 -1.53 5.61 29.85 0.17 -1.36 16 4 C 0.15 4.27 6.18 42.50 0.26 4.54 16 5 C -0.14 -4.72 9.27 22.63 0.21 -4.51 16 6 C -0.06 -2.09 5.80 -19.90 -0.12 -2.20 16 7 C 0.54 21.62 7.55 86.88 0.66 22.27 16 8 O -0.50 -26.83 12.62 -3.75 -0.05 -26.88 16 9 N -0.61 -19.57 3.06 -791.08 -2.42 -21.99 16 10 C 0.08 1.51 5.03 86.86 0.44 1.95 16 11 C -0.12 -1.69 7.09 31.99 0.23 -1.46 16 12 C -0.11 -2.26 6.46 31.78 0.21 -2.05 16 13 C 0.13 4.34 3.10 45.34 0.14 4.48 16 14 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.14 6.11 5.63 86.38 0.49 6.60 16 16 N -0.74 -41.91 4.12 -343.45 -1.41 -43.32 16 17 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 18 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -4.57 5.50 84.86 0.47 -4.10 16 20 N -0.95 -63.84 13.06 21.65 0.28 -63.56 16 21 Si 0.97 49.97 29.55 68.60 2.03 52.00 16 22 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 25 C -0.17 -4.32 8.06 22.75 0.18 -4.13 16 26 C 0.31 7.52 7.74 84.78 0.66 8.17 16 27 O -0.48 -8.48 13.56 -90.09 -1.22 -9.70 16 28 N -0.50 -13.36 9.87 -297.14 -2.93 -16.29 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.45 7.94 -2.39 -0.02 1.43 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 1.88 7.86 -2.39 -0.02 1.86 16 36 H 0.13 4.80 7.77 -2.91 -0.02 4.78 16 37 H 0.09 1.66 5.80 -2.39 -0.01 1.64 16 38 H 0.09 1.44 7.49 -2.38 -0.02 1.42 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 44 H 0.03 1.05 8.11 -2.39 -0.02 1.03 16 45 H 0.39 24.04 4.85 -93.23 -0.45 23.59 16 46 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.18 3.51 4.23 -2.91 -0.01 3.49 16 48 H 0.42 3.32 9.06 -74.06 -0.67 2.65 16 Total: -1.00 -86.71 384.39 -0.15 -86.86 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.13 Total: 32.98 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.71 Total: 9.91 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -6.49 Total: -145.16 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.27 Total: -36.58 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Total: -86.71 -0.15 -86.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499931126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.220 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds