Wall clock time and date at job start Tue Mar 31 2020 17:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47095 * 2 1 4 4 C 1.38626 * 120.75485 * 89.99604 * 3 2 1 5 5 C 1.38557 * 119.34926 * 179.97438 * 4 3 2 6 6 N 1.31522 * 120.90525 * 0.02562 * 5 4 3 7 7 C 1.32710 * 121.64244 * 359.97438 * 6 5 4 8 8 C 1.48173 * 119.72458 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00152 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99478 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99769 * 185.24217 * 10 8 7 12 12 C 1.52998 * 109.45938 * 54.98171 * 11 10 8 13 13 O 1.42904 * 109.47069 * 54.73886 * 12 11 10 14 14 C 1.53043 * 109.44978 * 174.94930 * 11 10 8 15 15 C 1.53190 * 109.31270 * 58.64946 * 14 11 10 16 16 N 1.46931 * 108.77459 * 54.63423 * 15 14 11 17 17 C 1.36939 * 120.62774 * 126.37156 * 16 15 14 18 18 H 1.07993 * 119.99383 * 210.33354 * 17 16 15 19 19 C 1.38808 * 119.99903 * 30.33124 * 17 16 15 20 20 N 1.31615 * 120.00214 * 15.12059 * 19 17 16 21 21 Si 1.86803 * 119.99639 * 195.11493 * 19 17 16 22 22 H 1.48495 * 109.47092 * 90.00511 * 21 19 17 23 23 H 1.48509 * 109.46961 * 210.00241 * 21 19 17 24 24 H 1.48497 * 109.47340 * 330.00052 * 21 19 17 25 25 C 1.46928 * 118.73991 * 306.39142 * 16 15 14 26 26 C 1.53043 * 109.46184 * 295.01111 * 11 10 8 27 27 C 1.38589 * 120.75602 * 270.25872 * 3 2 1 28 28 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47622 * 300.00201 * 1 2 3 30 30 H 1.09003 * 109.47355 * 60.00301 * 1 2 3 31 31 H 1.08999 * 109.47046 * 240.00292 * 2 1 3 32 32 H 1.09000 * 109.46880 * 119.99843 * 2 1 3 33 33 H 1.08003 * 120.32332 * 0.03100 * 4 3 2 34 34 H 1.08004 * 119.54307 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00210 * 5.24464 * 10 8 7 36 36 H 1.09004 * 109.47302 * 174.73782 * 12 11 10 37 37 H 1.09000 * 109.47652 * 294.74035 * 12 11 10 38 38 H 0.96697 * 113.99944 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.49367 * 178.59806 * 14 11 10 40 40 H 1.08995 * 109.49689 * 298.69489 * 14 11 10 41 41 H 1.09003 * 109.58374 * 294.84901 * 15 14 11 42 42 H 1.08991 * 109.58639 * 174.42552 * 15 14 11 43 43 H 0.97002 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58546 * 293.82484 * 25 16 15 45 45 H 1.08994 * 109.58482 * 173.39416 * 25 16 15 46 46 H 1.09009 * 109.49435 * 61.30768 * 26 11 10 47 47 H 1.08995 * 109.50000 * 181.40195 * 26 11 10 48 48 H 1.08000 * 120.46725 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2685 2.0893 1.1913 5 6 2.7308 3.3950 1.1573 6 7 2.9467 4.0056 0.0126 7 6 2.7333 3.4017 -1.1497 8 6 2.9903 4.1301 -2.4142 9 8 2.7970 3.5818 -3.4812 10 7 3.4394 5.4004 -2.3807 11 6 3.5842 6.1591 -3.6256 12 6 2.2532 6.1593 -4.3801 13 8 1.2204 6.6515 -3.5239 14 6 3.9863 7.5996 -3.3006 15 6 5.3015 7.5935 -2.5151 16 7 6.3067 6.8447 -3.2818 17 6 7.5190 7.4078 -3.5792 18 1 8.0371 7.1272 -4.4843 19 6 8.0818 8.3391 -2.7175 20 7 7.6191 8.4656 -1.4919 21 14 9.4962 9.4129 -3.2973 22 1 8.9574 10.6607 -3.8953 23 1 10.3655 9.7527 -2.1422 24 1 10.2901 8.6788 -4.3151 25 6 5.9862 5.4806 -3.7236 26 6 4.6633 5.5104 -4.4955 27 6 2.2635 2.0909 -1.1910 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0948 1.5967 2.1366 34 1 2.9162 3.9186 2.0836 35 1 3.6668 5.8122 -1.5325 36 1 2.3334 6.8001 -5.2582 37 1 2.0125 5.1432 -4.6927 38 1 0.3468 6.6798 -3.9376 39 1 4.1185 8.1582 -4.2272 40 1 3.2064 8.0684 -2.7006 41 1 5.1475 7.1140 -1.5484 42 1 5.6433 8.6178 -2.3670 43 1 8.0126 9.1162 -0.8896 44 1 5.8881 4.8289 -2.8554 45 1 6.7798 5.1109 -4.3729 46 1 4.3653 4.4922 -4.7460 47 1 4.7891 6.0887 -5.4108 48 1 2.0858 1.6023 -2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505380967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:09 Heat of formation + Delta-G solvation = -31.869763 kcal Electronic energy + Delta-G solvation = -29860.792649 eV Core-core repulsion = 25916.101512 eV Total energy + Delta-G solvation = -3944.691138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74209 -39.63335 -37.35631 -36.05416 -35.23646 -33.96691 -32.10221 -31.30221 -30.59702 -30.10568 -29.77064 -26.66980 -25.01382 -24.29095 -23.78168 -22.37879 -22.22879 -21.02033 -20.13984 -18.61533 -17.67677 -17.08200 -16.79728 -16.50741 -16.01996 -15.28016 -15.02083 -14.92691 -14.73981 -14.33422 -14.16593 -14.04381 -13.81365 -13.61328 -13.49772 -13.21770 -12.99838 -12.66141 -12.62371 -12.31415 -12.12653 -11.79891 -11.72992 -11.41224 -11.31410 -11.17781 -10.91888 -10.73177 -10.37026 -10.26077 -10.11186 -9.91594 -9.77613 -9.71081 -9.60002 -9.52409 -9.23126 -9.05788 -8.51874 -8.41935 -6.59015 -5.75078 -3.19933 0.66885 1.11980 2.94610 3.39747 3.41986 3.46711 3.47931 3.93667 4.20790 4.37788 4.48791 4.52647 4.56791 4.85530 4.91779 4.99170 5.02393 5.16126 5.33513 5.37087 5.43093 5.49228 5.54161 5.57518 5.60114 5.67748 5.68676 5.77005 5.82568 5.89065 6.02005 6.12297 6.15061 6.35243 6.36856 6.51796 6.60788 6.64410 6.70190 6.85308 6.99358 7.09140 7.34829 7.65699 7.70681 7.83262 7.84388 8.06649 8.50264 8.56665 9.25495 9.87986 10.46759 11.33282 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.003270 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.838209 B = 8559.874766 C = 9406.265379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.049 4.049 4 C -0.157 4.157 5 C 0.102 3.898 6 N -0.456 5.456 7 C 0.092 3.908 8 C 0.573 3.427 9 O -0.546 6.546 10 N -0.674 5.674 11 C 0.191 3.809 12 C 0.062 3.938 13 O -0.566 6.566 14 C -0.142 4.142 15 C 0.173 3.827 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.152 3.848 26 C -0.143 4.143 27 C -0.115 4.115 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.162 0.838 35 H 0.413 0.587 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.369 0.631 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -13.111 3.185 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.057 4.057 4 C -0.177 4.177 5 C -0.057 4.057 6 N -0.168 5.168 7 C -0.047 4.047 8 C 0.358 3.642 9 O -0.425 6.425 10 N -0.324 5.324 11 C 0.105 3.895 12 C -0.016 4.016 13 O -0.369 6.369 14 C -0.182 4.182 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.026 3.974 26 C -0.183 4.183 27 C -0.136 4.136 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.215 0.785 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.086 -12.423 2.935 19.762 hybrid contribution 0.106 -0.061 -0.103 0.160 sum -14.980 -12.484 2.832 19.704 Atomic orbital electron populations 1.21750 0.94186 1.02072 1.02482 1.20580 0.96534 0.91574 1.03583 1.20310 0.96030 0.96659 0.92724 1.22220 1.00454 0.96321 0.98693 1.22813 0.94741 0.92058 0.96092 1.67621 1.13441 1.37709 0.98006 1.21328 0.98295 0.92473 0.92566 1.17764 0.77495 0.81941 0.87040 1.90664 1.54101 1.67983 1.29757 1.45811 1.63271 1.12238 1.11034 1.20375 0.92334 0.92846 0.83968 1.22747 0.87980 0.98680 0.92237 1.86510 1.19407 1.88307 1.42714 1.22456 1.00630 0.92720 1.02366 1.20741 0.84672 0.98876 0.91026 1.44035 1.13594 1.09694 1.64039 1.19177 0.96152 1.20675 1.02219 0.91820 1.25103 0.98071 1.01680 0.94641 1.70014 1.43729 1.36475 1.04365 0.86291 0.82012 0.80834 0.77612 1.21468 1.21801 1.20486 1.20805 0.93090 0.87921 0.95619 1.22392 0.96468 1.00828 0.98603 1.21977 0.97854 0.94375 0.99382 0.91997 0.92441 0.92283 0.90297 0.90403 0.84567 0.82091 0.74926 0.93463 0.91700 0.78540 0.91252 0.91809 0.96288 0.89437 0.93665 0.96563 0.92825 0.90909 0.91514 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.62 6.11 -27.88 -0.17 -0.79 16 3 C -0.05 -0.51 5.17 -104.34 -0.54 -1.05 16 4 C -0.16 -1.51 9.82 -39.32 -0.39 -1.90 16 5 C 0.10 1.19 11.18 -17.57 -0.20 1.00 16 6 N -0.46 -6.96 9.55 -9.80 -0.09 -7.06 16 7 C 0.09 1.44 6.75 -83.01 -0.56 0.88 16 8 C 0.57 10.22 7.22 -12.18 -0.09 10.13 16 9 O -0.55 -10.26 12.63 5.35 0.07 -10.19 16 10 N -0.67 -12.34 3.89 -48.40 -0.19 -12.53 16 11 C 0.19 3.48 0.44 -131.77 -0.06 3.42 16 12 C 0.06 0.99 5.54 37.16 0.21 1.19 16 13 O -0.57 -8.53 12.94 -35.23 -0.46 -8.99 16 14 C -0.14 -2.79 4.89 -26.61 -0.13 -2.92 16 15 C 0.17 4.12 5.00 -3.71 -0.02 4.10 16 16 N -0.59 -14.96 2.98 -172.32 -0.51 -15.47 16 17 C -0.25 -6.99 9.57 -15.06 -0.14 -7.13 16 18 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 19 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 20 N -0.90 -26.19 11.25 55.49 0.62 -25.57 16 21 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.15 3.39 6.26 -3.71 -0.02 3.37 16 26 C -0.14 -2.73 4.74 -26.61 -0.13 -2.86 16 27 C -0.12 -1.50 9.34 -39.05 -0.36 -1.87 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.41 7.92 6.47 -40.82 -0.26 7.66 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.07 6.17 -51.93 -0.32 0.75 16 38 H 0.37 3.80 9.12 45.56 0.42 4.21 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.21 7.80 -51.93 -0.40 0.80 16 41 H 0.02 0.48 6.84 -51.93 -0.36 0.12 16 42 H 0.09 2.33 6.17 -51.93 -0.32 2.01 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 45 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.07 1.38 6.39 -51.92 -0.33 1.05 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -32.62 380.63 -8.74 -41.36 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.57 Total: 10.90 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.32 Total: 4.99 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.17 Total: -60.63 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.39 Total: -19.18 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.62 -8.74 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505380967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.490 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds