Wall clock time and date at job start Tue Mar 31 2020 17:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47095 * 2 1 4 4 C 1.38626 * 120.75485 * 89.99604 * 3 2 1 5 5 C 1.38557 * 119.34926 * 179.97438 * 4 3 2 6 6 N 1.31522 * 120.90525 * 0.02562 * 5 4 3 7 7 C 1.32710 * 121.64244 * 359.97438 * 6 5 4 8 8 C 1.48173 * 119.72458 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00152 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99478 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99769 * 185.24217 * 10 8 7 12 12 C 1.52998 * 109.45938 * 54.98171 * 11 10 8 13 13 O 1.42904 * 109.47069 * 54.73886 * 12 11 10 14 14 C 1.53043 * 109.44978 * 174.94930 * 11 10 8 15 15 C 1.53190 * 109.31270 * 58.64946 * 14 11 10 16 16 N 1.46931 * 108.77459 * 54.63423 * 15 14 11 17 17 C 1.36939 * 120.62774 * 126.37156 * 16 15 14 18 18 H 1.07993 * 119.99383 * 210.33354 * 17 16 15 19 19 C 1.38808 * 119.99903 * 30.33124 * 17 16 15 20 20 N 1.31615 * 120.00214 * 15.12059 * 19 17 16 21 21 Si 1.86803 * 119.99639 * 195.11493 * 19 17 16 22 22 H 1.48495 * 109.47092 * 90.00511 * 21 19 17 23 23 H 1.48509 * 109.46961 * 210.00241 * 21 19 17 24 24 H 1.48497 * 109.47340 * 330.00052 * 21 19 17 25 25 C 1.46928 * 118.73991 * 306.39142 * 16 15 14 26 26 C 1.53043 * 109.46184 * 295.01111 * 11 10 8 27 27 C 1.38589 * 120.75602 * 270.25872 * 3 2 1 28 28 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47622 * 300.00201 * 1 2 3 30 30 H 1.09003 * 109.47355 * 60.00301 * 1 2 3 31 31 H 1.08999 * 109.47046 * 240.00292 * 2 1 3 32 32 H 1.09000 * 109.46880 * 119.99843 * 2 1 3 33 33 H 1.08003 * 120.32332 * 0.03100 * 4 3 2 34 34 H 1.08004 * 119.54307 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00210 * 5.24464 * 10 8 7 36 36 H 1.09004 * 109.47302 * 174.73782 * 12 11 10 37 37 H 1.09000 * 109.47652 * 294.74035 * 12 11 10 38 38 H 0.96697 * 113.99944 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.49367 * 178.59806 * 14 11 10 40 40 H 1.08995 * 109.49689 * 298.69489 * 14 11 10 41 41 H 1.09003 * 109.58374 * 294.84901 * 15 14 11 42 42 H 1.08991 * 109.58639 * 174.42552 * 15 14 11 43 43 H 0.97002 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58546 * 293.82484 * 25 16 15 45 45 H 1.08994 * 109.58482 * 173.39416 * 25 16 15 46 46 H 1.09009 * 109.49435 * 61.30768 * 26 11 10 47 47 H 1.08995 * 109.50000 * 181.40195 * 26 11 10 48 48 H 1.08000 * 120.46725 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2685 2.0893 1.1913 5 6 2.7308 3.3950 1.1573 6 7 2.9467 4.0056 0.0126 7 6 2.7333 3.4017 -1.1497 8 6 2.9903 4.1301 -2.4142 9 8 2.7970 3.5818 -3.4812 10 7 3.4394 5.4004 -2.3807 11 6 3.5842 6.1591 -3.6256 12 6 2.2532 6.1593 -4.3801 13 8 1.2204 6.6515 -3.5239 14 6 3.9863 7.5996 -3.3006 15 6 5.3015 7.5935 -2.5151 16 7 6.3067 6.8447 -3.2818 17 6 7.5190 7.4078 -3.5792 18 1 8.0371 7.1272 -4.4843 19 6 8.0818 8.3391 -2.7175 20 7 7.6191 8.4656 -1.4919 21 14 9.4962 9.4129 -3.2973 22 1 8.9574 10.6607 -3.8953 23 1 10.3655 9.7527 -2.1422 24 1 10.2901 8.6788 -4.3151 25 6 5.9862 5.4806 -3.7236 26 6 4.6633 5.5104 -4.4955 27 6 2.2635 2.0909 -1.1910 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0948 1.5967 2.1366 34 1 2.9162 3.9186 2.0836 35 1 3.6668 5.8122 -1.5325 36 1 2.3334 6.8001 -5.2582 37 1 2.0125 5.1432 -4.6927 38 1 0.3468 6.6798 -3.9376 39 1 4.1185 8.1582 -4.2272 40 1 3.2064 8.0684 -2.7006 41 1 5.1475 7.1140 -1.5484 42 1 5.6433 8.6178 -2.3670 43 1 8.0126 9.1162 -0.8896 44 1 5.8881 4.8289 -2.8554 45 1 6.7798 5.1109 -4.3729 46 1 4.3653 4.4922 -4.7460 47 1 4.7891 6.0887 -5.4108 48 1 2.0858 1.6023 -2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505380967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:09 Heat of formation + Delta-G solvation = -54.721167 kcal Electronic energy + Delta-G solvation = -29861.783560 eV Core-core repulsion = 25916.101512 eV Total energy + Delta-G solvation = -3945.682049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91633 -40.86099 -38.84589 -37.45794 -36.03954 -35.60624 -33.72672 -32.59970 -31.84878 -31.53377 -31.14472 -28.39256 -25.95074 -25.64719 -25.13918 -24.00850 -23.26800 -22.56967 -21.46915 -20.15467 -19.00608 -18.61880 -18.13384 -17.61250 -16.96300 -16.84787 -16.46966 -16.29025 -16.09256 -15.77302 -15.36490 -15.31135 -15.03922 -14.86355 -14.62782 -14.58001 -14.44224 -14.20667 -13.90866 -13.32705 -13.29509 -13.21077 -13.03566 -12.95133 -12.64892 -12.59944 -12.36548 -12.24037 -12.02208 -11.87810 -11.83786 -11.47853 -11.47273 -11.16578 -10.74582 -10.57274 -10.55574 -10.35775 -10.22847 -9.90019 -8.65528 -7.87078 -5.35864 -0.32897 0.23050 1.47241 1.48229 1.57239 1.76550 2.13322 2.50892 2.87950 3.16502 3.24636 3.30563 3.60011 3.67650 3.73685 3.90708 3.97718 4.03795 4.05586 4.21383 4.30086 4.42330 4.45248 4.49980 4.53267 4.62865 4.63796 4.68006 4.71295 4.77245 4.88922 4.94011 4.97756 5.01661 5.07619 5.10452 5.17450 5.24204 5.36134 5.37849 5.41865 5.60141 5.63554 5.66952 5.70599 6.39570 6.51434 6.84715 6.89244 7.14783 7.20239 7.83211 8.38158 9.19086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.003270 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.838209 B = 8559.874766 C = 9406.265379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.047 4.047 4 C -0.138 4.138 5 C 0.090 3.910 6 N -0.490 5.490 7 C 0.058 3.942 8 C 0.569 3.431 9 O -0.563 6.563 10 N -0.679 5.679 11 C 0.188 3.812 12 C 0.074 3.926 13 O -0.578 6.578 14 C -0.125 4.125 15 C 0.184 3.816 16 N -0.605 5.605 17 C -0.267 4.267 18 H 0.064 0.936 19 C -0.046 4.046 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.154 3.846 26 C -0.129 4.129 27 C -0.120 4.120 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.073 0.927 40 H 0.071 0.929 41 H -0.001 1.001 42 H 0.056 0.944 43 H 0.250 0.750 44 H 0.000 1.000 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 -14.407 3.546 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.158 4.158 5 C -0.069 4.069 6 N -0.202 5.202 7 C -0.079 4.079 8 C 0.355 3.645 9 O -0.443 6.443 10 N -0.328 5.328 11 C 0.102 3.898 12 C -0.004 4.004 13 O -0.386 6.386 14 C -0.164 4.164 15 C 0.058 3.942 16 N -0.328 5.328 17 C -0.397 4.397 18 H 0.082 0.918 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.028 3.972 26 C -0.169 4.169 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.195 0.805 34 H 0.203 0.797 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.338 -13.738 3.263 21.594 hybrid contribution 0.450 0.242 -0.098 0.520 sum -15.889 -13.496 3.165 21.086 Atomic orbital electron populations 1.21746 0.93502 1.03057 1.02013 1.20671 0.96948 0.89505 1.04858 1.20709 0.94876 0.98014 0.91880 1.22653 0.97718 0.95268 1.00129 1.23363 0.94466 0.93317 0.95793 1.67533 1.14767 1.39073 0.98848 1.21109 1.01243 0.93548 0.91987 1.18151 0.76727 0.81633 0.87944 1.90627 1.54886 1.68212 1.30604 1.45822 1.63724 1.12696 1.10543 1.20374 0.93668 0.91568 0.84223 1.22508 0.86844 0.98937 0.92157 1.86455 1.20679 1.88127 1.43296 1.22215 0.98261 0.94161 1.01804 1.20498 0.86303 0.96502 0.90874 1.44248 1.13486 1.10883 1.64190 1.19485 0.97029 1.20930 1.02227 0.91799 1.25862 1.00695 1.02959 0.94693 1.70172 1.45099 1.37038 1.05378 0.85250 0.79001 0.79032 0.77013 1.20978 1.22147 1.19515 1.20821 0.94872 0.86252 0.95216 1.22210 0.94879 1.01356 0.98471 1.22071 0.97858 0.93586 1.00642 0.90313 0.92049 0.93645 0.90116 0.88095 0.80461 0.79722 0.75735 0.91539 0.92222 0.75943 0.90850 0.91005 0.98305 0.92585 0.94047 0.98234 0.93032 0.90551 0.90640 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.97 6.11 29.85 0.18 -0.78 16 3 C -0.05 -0.87 5.17 -19.68 -0.10 -0.97 16 4 C -0.14 -2.27 9.82 22.44 0.22 -2.05 16 5 C 0.09 1.98 11.18 84.82 0.95 2.93 16 6 N -0.49 -15.16 9.55 -184.91 -1.77 -16.92 16 7 C 0.06 1.87 6.75 41.91 0.28 2.15 16 8 C 0.57 20.83 7.22 86.88 0.63 21.46 16 9 O -0.56 -21.49 12.63 -3.76 -0.05 -21.53 16 10 N -0.68 -25.55 3.89 -425.32 -1.65 -27.20 16 11 C 0.19 6.84 0.44 3.63 0.00 6.84 16 12 C 0.07 2.27 5.54 71.98 0.40 2.67 16 13 O -0.58 -16.67 12.94 -148.98 -1.93 -18.60 16 14 C -0.13 -4.95 4.89 30.67 0.15 -4.80 16 15 C 0.18 9.08 5.00 86.36 0.43 9.51 16 16 N -0.60 -31.42 2.98 -699.10 -2.09 -33.50 16 17 C -0.27 -15.01 9.57 84.03 0.80 -14.20 16 18 H 0.06 3.53 7.87 -2.91 -0.02 3.50 16 19 C -0.05 -2.62 4.94 84.86 0.42 -2.20 16 20 N -0.93 -55.64 11.25 21.65 0.24 -55.40 16 21 Si 0.97 45.46 29.58 68.60 2.03 47.48 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C 0.15 7.04 6.26 86.36 0.54 7.58 16 26 C -0.13 -4.95 4.74 30.67 0.15 -4.80 16 27 C -0.12 -3.12 9.34 22.61 0.21 -2.91 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.41 16.32 6.47 -92.71 -0.60 15.72 16 36 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 1.92 6.17 -2.39 -0.01 1.90 16 38 H 0.39 7.30 9.12 -74.06 -0.68 6.62 16 39 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.07 2.72 7.80 -2.39 -0.02 2.70 16 41 H 0.00 -0.05 6.84 -2.39 -0.02 -0.07 16 42 H 0.06 3.10 6.17 -2.39 -0.01 3.09 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.00 -0.01 7.74 -2.38 -0.02 -0.03 16 45 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 46 H 0.08 2.89 6.39 -2.38 -0.02 2.87 16 47 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.14 3.62 7.64 -2.91 -0.02 3.60 16 Total: -1.00 -72.54 380.63 0.48 -72.06 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.29 Total: 33.99 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.97 Total: 19.62 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.26 Total: -133.03 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.97 Total: -40.14 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.54 0.48 -72.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505380967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.342 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds