Wall clock time and date at job start Tue Mar 31 2020 17:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47541 * 2 1 4 4 C 1.38359 * 120.27101 * 89.99978 * 3 2 1 5 5 N 1.31876 * 121.18560 * 179.72536 * 4 3 2 6 6 C 1.32240 * 121.80099 * 0.27563 * 5 4 3 7 7 O 1.35431 * 119.79932 * 179.97438 * 6 5 4 8 8 C 1.40275 * 120.40171 * 0.02562 * 6 5 4 9 9 C 1.47525 * 120.60185 * 180.02562 * 8 6 5 10 10 O 1.21590 * 119.99669 * 9.64800 * 9 8 6 11 11 N 1.34771 * 120.00470 * 189.65217 * 9 8 6 12 12 C 1.47486 * 127.02878 * 6.72490 * 11 9 8 13 13 C 1.54007 * 107.08183 * 154.51757 * 12 11 9 14 14 C 1.54616 * 105.04342 * 1.30484 * 13 12 11 15 15 C 1.53007 * 110.73465 * 263.51220 * 14 13 12 16 16 C 1.52995 * 110.73994 * 140.37100 * 14 13 12 17 17 N 1.46502 * 109.47320 * 179.97438 * 16 14 13 18 18 C 1.36932 * 120.00231 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00131 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00014 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00198 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46971 * 59.99803 * 22 20 18 24 24 H 1.48502 * 109.47096 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47061 * 300.00190 * 22 20 18 26 26 C 1.48110 * 127.03701 * 186.40691 * 11 9 8 27 27 C 1.38341 * 120.27307 * 270.27511 * 3 2 1 28 28 H 1.09003 * 109.47308 * 59.99716 * 1 2 3 29 29 H 1.09000 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46799 * 299.99999 * 1 2 3 31 31 H 1.09000 * 109.46791 * 239.99533 * 2 1 3 32 32 H 1.09003 * 109.47308 * 120.00284 * 2 1 3 33 33 H 1.07995 * 119.40465 * 0.02562 * 4 3 2 34 34 H 0.96695 * 114.00060 * 90.00111 * 7 6 5 35 35 H 1.09001 * 109.91394 * 273.86941 * 12 11 9 36 36 H 1.08997 * 109.91772 * 35.15610 * 12 11 9 37 37 H 1.09007 * 110.32640 * 120.19423 * 13 12 11 38 38 H 1.08997 * 110.32830 * 242.30313 * 13 12 11 39 39 H 1.08995 * 109.47267 * 60.00183 * 15 14 13 40 40 H 1.08999 * 109.46715 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.46666 * 299.99514 * 15 14 13 42 42 H 1.09000 * 109.47187 * 299.99936 * 16 14 13 43 43 H 1.09007 * 109.47771 * 59.99599 * 16 14 13 44 44 H 0.97002 * 119.99557 * 359.97438 * 17 16 14 45 45 H 0.97006 * 120.00252 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.65972 * 337.76810 * 26 11 9 47 47 H 1.08996 * 110.66301 * 100.88571 * 26 11 9 48 48 H 1.07997 * 120.82126 * 359.96633 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2649 2.0783 1.1949 5 7 2.7096 3.3196 1.2160 6 6 2.9481 3.9934 0.1034 7 8 3.4039 5.2668 0.1723 8 6 2.7309 3.3974 -1.1478 9 6 2.9961 4.1448 -2.3918 10 8 3.5686 5.2165 -2.3468 11 7 2.6037 3.6397 -3.5781 12 6 1.7846 2.4340 -3.8029 13 6 1.0799 2.6125 -5.1606 14 6 1.5801 3.9740 -5.6964 15 6 0.5809 5.0853 -5.3683 16 6 1.8330 3.9032 -7.2036 17 7 2.3045 5.2054 -7.6814 18 6 2.5983 5.3830 -9.0069 19 1 2.4829 4.5630 -9.7002 20 6 3.0455 6.6167 -9.4595 21 7 3.1875 7.6157 -8.6144 22 14 3.4470 6.8588 -11.2677 23 1 2.2345 6.5953 -12.0836 24 1 3.9011 8.2549 -11.4913 25 1 4.5253 5.9184 -11.6655 26 6 2.9015 4.1855 -4.9224 27 6 2.2595 2.0801 -1.1947 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0835 1.5641 2.1271 34 1 4.3680 5.3390 0.1904 35 1 2.4231 1.5510 -3.8294 36 1 1.0432 2.3357 -3.0099 37 1 1.3627 1.8104 -5.8423 38 1 -0.0016 2.6308 -5.0264 39 1 0.4581 5.1561 -4.2876 40 1 0.9530 6.0341 -5.7550 41 1 -0.3802 4.8574 -5.8291 42 1 2.5883 3.1449 -7.4101 43 1 0.9068 3.6423 -7.7157 44 1 2.4084 5.9418 -7.0586 45 1 3.5004 8.4778 -8.9306 46 1 3.1451 5.2462 -4.8615 47 1 3.7130 3.6297 -5.3920 48 1 2.0817 1.5893 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569688016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:49 Heat of formation + Delta-G solvation = -13.475207 kcal Electronic energy + Delta-G solvation = -29214.824740 eV Core-core repulsion = 25270.931250 eV Total energy + Delta-G solvation = -3943.893490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26927 -39.79762 -38.05485 -37.32689 -34.97678 -34.59736 -33.21628 -32.06199 -30.47094 -29.45676 -29.32832 -26.76801 -25.83345 -24.87748 -24.41530 -23.31576 -22.19279 -21.98610 -19.86977 -18.88478 -18.72082 -17.65774 -17.23852 -16.66826 -16.32551 -15.85316 -15.61466 -15.13505 -14.60728 -14.46486 -14.37488 -14.12249 -13.82321 -13.71951 -13.58806 -13.39719 -13.26673 -12.92788 -12.64408 -12.39373 -12.17495 -12.11851 -12.03974 -11.73688 -11.59183 -11.48659 -11.44265 -11.00434 -10.81781 -10.54026 -10.51537 -10.34540 -10.19549 -10.14368 -9.96018 -9.62257 -9.54396 -9.11188 -8.87175 -8.61583 -6.91632 -5.74602 -3.03991 0.31322 0.74929 2.70197 2.85574 3.28896 3.44848 3.49125 3.50708 3.55331 4.08245 4.22321 4.38615 4.40261 4.50621 4.60987 4.63939 4.82389 4.85439 4.87526 4.92544 5.07507 5.21235 5.25007 5.28681 5.38427 5.41685 5.47326 5.51312 5.59461 5.71399 5.75579 5.79727 5.82039 5.94206 5.99607 6.08056 6.10165 6.14060 6.26371 6.37922 6.50023 6.64698 6.74704 6.84287 7.30530 7.49764 7.58508 7.70054 8.13523 8.43652 9.54856 10.12015 10.46305 11.47884 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019639 B = 0.002692 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.427889 B =10397.198973 C =11440.152947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.157 4.157 4 C 0.146 3.854 5 N -0.506 5.506 6 C 0.364 3.636 7 O -0.461 6.461 8 C -0.192 4.192 9 C 0.578 3.422 10 O -0.516 6.516 11 N -0.614 5.614 12 C 0.090 3.910 13 C -0.126 4.126 14 C -0.078 4.078 15 C -0.130 4.130 16 C 0.170 3.830 17 N -0.731 5.731 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.121 3.879 27 C -0.052 4.052 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 -18.979 19.629 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.159 4.159 4 C -0.012 4.012 5 N -0.224 5.224 6 C 0.184 3.816 7 O -0.269 6.269 8 C -0.199 4.199 9 C 0.366 3.634 10 O -0.392 6.392 11 N -0.348 5.348 12 C -0.033 4.033 13 C -0.164 4.164 14 C -0.080 4.080 15 C -0.187 4.187 16 C 0.042 3.958 17 N -0.376 5.376 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.078 4.078 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.179 0.821 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.625 -17.717 20.335 27.364 hybrid contribution 0.563 -0.060 -1.551 1.651 sum -4.063 -17.777 18.784 26.179 Atomic orbital electron populations 1.21792 0.94294 1.02174 1.02487 1.20459 0.96390 0.91119 1.03583 1.20903 1.02762 0.98557 0.93685 1.22646 0.91871 0.88774 0.97883 1.67347 1.14896 1.08774 1.31358 1.19192 0.91757 0.84379 0.86264 1.84703 1.27985 1.18911 1.95292 1.21143 1.08259 0.95863 0.94647 1.17404 0.79629 0.84785 0.81543 1.90840 1.42121 1.20392 1.85891 1.48668 1.52201 1.27867 1.06060 1.22537 0.94156 0.88041 0.98544 1.22633 1.00544 0.98270 0.94954 1.21797 0.94874 0.94533 0.96776 1.21712 0.98087 0.99007 0.99925 1.20616 0.96715 0.89994 0.88511 1.42406 1.79706 1.08137 1.07344 1.19149 1.37084 0.95938 0.85183 0.91279 1.24742 1.02283 0.96109 0.97704 1.69648 1.52675 1.02262 1.33358 0.86278 0.78091 0.76804 0.85038 1.21314 1.21715 1.21315 1.22557 0.96936 1.01380 0.79195 1.22648 0.92129 0.92713 1.00263 0.92375 0.91914 0.92417 0.90482 0.90373 0.82056 0.73300 0.91079 0.90376 0.90003 0.90366 0.93733 0.91022 0.92693 0.96125 0.95872 0.77981 0.93394 0.88960 0.90469 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.08 -0.35 6.08 -27.89 -0.17 -0.52 16 3 C -0.16 -1.18 5.14 -104.54 -0.54 -1.71 16 4 C 0.15 1.25 10.84 -17.49 -0.19 1.06 16 5 N -0.51 -6.02 10.37 -12.98 -0.13 -6.16 16 6 C 0.36 4.82 7.76 -16.61 -0.13 4.69 16 7 O -0.46 -6.41 11.71 -39.52 -0.46 -6.88 16 8 C -0.19 -2.43 5.88 -104.69 -0.62 -3.05 16 9 C 0.58 8.97 7.80 -12.48 -0.10 8.87 16 10 O -0.52 -9.89 15.45 -16.25 -0.25 -10.15 16 11 N -0.61 -8.53 3.19 -171.22 -0.55 -9.08 16 12 C 0.09 0.88 4.98 -2.98 -0.01 0.87 16 13 C -0.13 -1.35 6.09 -25.36 -0.15 -1.51 16 14 C -0.08 -1.20 0.64 -152.82 -0.10 -1.30 16 15 C -0.13 -2.12 8.30 37.16 0.31 -1.81 16 16 C 0.17 3.21 5.11 -4.04 -0.02 3.19 16 17 N -0.73 -17.98 5.16 -59.91 -0.31 -18.29 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.12 1.97 5.69 -2.32 -0.01 1.95 16 27 C -0.05 -0.48 8.12 -38.89 -0.32 -0.79 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.30 8.09 -51.93 -0.42 -0.13 16 32 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.41 4.04 9.06 45.56 0.41 4.45 16 35 H 0.07 0.54 7.40 -51.93 -0.38 0.16 16 36 H 0.08 0.65 6.02 -51.93 -0.31 0.33 16 37 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 38 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 39 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.07 1.40 6.68 -51.93 -0.35 1.05 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.39 10.10 6.21 -40.82 -0.25 9.85 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.09 1.81 7.71 -51.93 -0.40 1.41 16 47 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 48 H 0.16 1.18 3.64 -52.49 -0.19 0.99 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.17 385.35 -8.59 -43.76 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.47 Total: 8.84 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.93 Total: 2.35 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.27 Total: -61.13 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.71 Total: -17.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.17 -8.59 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569688016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.287 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds