Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 N 1.46898 * 109.44961 * 60.03434 * 3 2 1 5 5 C 1.53043 * 109.45797 * 180.02562 * 3 2 1 6 6 C 1.53189 * 109.31261 * 181.38910 * 5 3 2 7 7 N 1.46934 * 108.77445 * 305.36110 * 6 5 3 8 8 C 1.34769 * 120.63145 * 233.59008 * 7 6 5 9 9 O 1.21594 * 120.00319 * 5.28868 * 8 7 6 10 10 N 1.34782 * 120.00181 * 185.29680 * 8 7 6 11 11 C 1.40020 * 120.00154 * 175.48665 * 10 8 7 12 12 C 1.38918 * 120.00120 * 215.37027 * 11 10 8 13 13 C 1.38007 * 119.99753 * 180.27253 * 12 11 10 14 14 C 1.38899 * 120.00147 * 359.47377 * 13 12 11 15 15 O 1.35791 * 119.99825 * 180.29775 * 14 13 12 16 16 C 1.34811 * 116.99645 * 354.68504 * 15 14 13 17 17 H 1.07994 * 120.00474 * 5.03494 * 16 15 14 18 18 C 1.38629 * 119.99569 * 185.03207 * 16 15 14 19 19 N 1.31571 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99750 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47257 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47469 * 120.00268 * 20 18 16 23 23 H 1.48507 * 109.46894 * 239.99941 * 20 18 16 24 24 C 1.38903 * 120.00248 * 0.27184 * 14 13 12 25 25 C 1.38002 * 120.00393 * 359.97438 * 24 14 13 26 26 C 1.46927 * 118.73776 * 53.85686 * 7 6 5 27 27 C 1.53039 * 109.46139 * 300.06539 * 3 2 1 28 28 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46676 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.46749 * 60.00161 * 1 2 3 31 31 H 1.09002 * 109.47175 * 239.99734 * 2 1 3 32 32 H 1.08999 * 109.46803 * 120.00380 * 2 1 3 33 33 H 1.00900 * 110.99889 * 299.96773 * 4 3 2 34 34 H 1.00900 * 110.99835 * 63.91914 * 4 3 2 35 35 H 1.08993 * 109.50085 * 61.42984 * 5 3 2 36 36 H 1.09000 * 109.52145 * 301.35160 * 5 3 2 37 37 H 1.08997 * 109.59007 * 185.57785 * 6 5 3 38 38 H 1.09002 * 109.59103 * 65.14657 * 6 5 3 39 39 H 0.97002 * 119.99774 * 355.47748 * 10 8 7 40 40 H 1.07999 * 119.99806 * 0.03631 * 12 11 10 41 41 H 1.08007 * 119.99412 * 179.74297 * 13 12 11 42 42 H 0.97005 * 120.00197 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99811 * 180.02562 * 24 14 13 44 44 H 1.07998 * 120.00490 * 180.02562 * 25 24 14 45 45 H 1.09005 * 109.58375 * 65.93049 * 26 7 6 46 46 H 1.08994 * 109.58831 * 186.35222 * 26 7 6 47 47 H 1.08996 * 109.50023 * 298.57045 * 27 3 2 48 48 H 1.09005 * 109.49516 * 58.63075 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5508 2.1343 1.2000 5 6 3.5705 1.4422 -0.0006 6 6 4.0774 2.8873 0.0344 7 7 3.4737 3.6275 -1.0821 8 6 4.2463 4.3027 -1.9559 9 8 5.4576 4.2254 -1.8825 10 7 3.6764 5.0638 -2.9111 11 6 4.4769 5.8394 -3.7586 12 6 4.0304 7.0818 -4.1911 13 6 4.8170 7.8437 -5.0309 14 6 6.0598 7.3731 -5.4350 15 8 6.8363 8.1255 -6.2565 16 6 6.2983 9.2668 -6.7312 17 1 5.3248 9.5873 -6.3911 18 6 6.9950 10.0291 -7.6561 19 7 8.1814 9.6390 -8.0701 20 14 6.2499 11.6110 -8.3134 21 1 4.9174 11.8254 -7.6940 22 1 7.1399 12.7526 -7.9819 23 1 6.0999 11.5123 -9.7876 24 6 6.5086 6.1332 -4.9984 25 6 5.7199 5.3690 -4.1627 26 6 2.0114 3.6223 -1.2245 27 6 1.5284 2.1642 -1.2488 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5421 2.1480 1.2235 34 1 1.9263 1.7150 2.0374 35 1 3.9338 0.9509 -0.9032 36 1 3.9350 0.9074 0.8765 37 1 5.1628 2.8964 -0.0657 38 1 3.7915 3.3522 0.9780 39 1 2.7116 5.0742 -3.0115 40 1 3.0660 7.4496 -3.8731 41 1 4.4680 8.8078 -5.3704 42 1 8.6687 10.1722 -8.7176 43 1 7.4751 5.7676 -5.3123 44 1 6.0690 4.4051 -3.8228 45 1 1.5604 4.1458 -0.3815 46 1 1.7331 4.1164 -2.1553 47 1 1.9113 1.6660 -2.1394 48 1 0.4386 2.1431 -1.2603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649975007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = -42.595433 kcal Electronic energy + Delta-G solvation = -28463.445099 eV Core-core repulsion = 24518.288861 eV Total energy + Delta-G solvation = -3945.156238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88377 -40.70176 -39.79029 -38.17559 -36.17160 -35.40823 -34.13519 -32.30591 -31.84823 -31.50176 -30.79523 -29.25184 -27.33368 -26.17574 -24.47688 -23.95144 -23.49712 -22.48612 -21.17962 -20.27712 -19.71672 -19.14896 -18.81393 -17.86067 -16.83850 -16.72601 -16.51339 -16.33727 -16.00117 -15.63715 -15.49810 -15.48459 -15.25227 -15.00477 -14.85005 -14.56220 -14.43743 -14.15726 -13.81025 -13.59993 -13.46215 -13.27504 -13.16224 -12.96866 -12.77547 -12.70619 -12.45661 -12.33683 -12.13421 -12.06393 -11.91679 -11.52477 -11.29936 -11.23684 -11.14049 -10.89363 -10.55164 -9.82116 -9.79349 -9.30696 -8.54091 -8.43063 -6.10500 0.54643 0.60840 1.38090 1.46158 1.56973 1.61177 2.10769 2.20791 2.85988 2.90388 3.18770 3.54245 3.58710 3.67432 3.84718 3.98046 4.07220 4.16219 4.17787 4.27832 4.41463 4.45916 4.52236 4.55664 4.59192 4.62582 4.72229 4.78559 4.81444 4.90903 4.99055 5.02989 5.09320 5.12754 5.16451 5.19830 5.22822 5.33287 5.39483 5.41961 5.45954 5.59286 5.65007 5.72437 5.99607 6.05573 6.21679 6.37112 6.73498 6.93737 7.01009 7.54094 7.82599 8.80446 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034156 B = 0.002013 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.565937 B =13906.375413 C =14284.409332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.128 3.872 4 N -0.837 5.837 5 C -0.117 4.117 6 C 0.139 3.861 7 N -0.615 5.615 8 C 0.695 3.305 9 O -0.623 6.623 10 N -0.665 5.665 11 C 0.082 3.918 12 C -0.081 4.081 13 C -0.218 4.218 14 C 0.106 3.894 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.107 0.893 18 C -0.027 4.027 19 N -0.924 5.924 20 Si 1.022 2.978 21 H -0.247 1.247 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.189 4.189 25 C -0.074 4.074 26 C 0.116 3.884 27 C -0.120 4.120 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.346 0.654 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.417 0.583 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.271 0.729 43 H 0.110 0.890 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.439 -17.798 19.077 34.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C 0.035 3.965 4 N -0.370 5.370 5 C -0.156 4.156 6 C 0.016 3.984 7 N -0.351 5.351 8 C 0.398 3.602 9 O -0.504 6.504 10 N -0.316 5.316 11 C -0.013 4.013 12 C -0.101 4.101 13 C -0.237 4.237 14 C 0.056 3.944 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.124 0.876 18 C -0.224 4.224 19 N -0.562 5.562 20 Si 0.841 3.159 21 H -0.170 1.170 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.209 4.209 25 C -0.094 4.094 26 C -0.006 4.006 27 C -0.159 4.159 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.874 -17.212 18.694 32.885 hybrid contribution -0.295 -0.414 -0.405 0.650 sum -21.169 -17.626 18.289 33.065 Atomic orbital electron populations 1.21841 0.94800 1.02108 1.02452 1.22263 0.97081 0.97147 1.02329 1.20605 0.93248 0.91364 0.91288 1.58884 1.14545 1.59722 1.03818 1.21927 0.95391 0.95629 1.02612 1.21375 0.97308 0.91595 0.88133 1.47271 1.07258 1.52232 1.28355 1.16112 0.85016 0.79412 0.79709 1.90887 1.14215 1.69303 1.75982 1.42320 1.10039 1.46232 1.33011 1.17179 0.93536 0.92405 0.98161 1.20793 1.00786 0.91054 0.97490 1.21102 0.95321 1.02592 1.04714 1.19841 0.91340 0.91542 0.91690 1.83965 1.40049 1.33345 1.56569 1.21920 1.04757 0.97712 1.24299 0.87554 1.26650 0.96198 1.03485 0.96098 1.70219 1.13834 1.40569 1.31585 0.84487 0.78685 0.74648 0.78099 1.16976 1.19648 1.19494 1.20253 1.01962 0.94013 1.04678 1.20846 0.94106 0.99548 0.94886 1.21860 0.77980 0.98088 1.02656 1.22071 1.02093 0.94615 0.97107 0.92722 0.91805 0.91971 0.92394 0.91622 0.83625 0.83988 0.92550 0.89523 0.92154 0.89900 0.74239 0.82474 0.84877 0.91957 0.87138 0.85226 0.89130 0.90145 0.92128 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.23 71.98 0.66 -0.12 16 2 C -0.15 -1.07 5.17 30.60 0.16 -0.91 16 3 C 0.13 1.10 0.58 3.55 0.00 1.11 16 4 N -0.84 -5.23 7.35 -151.46 -1.11 -6.34 16 5 C -0.12 -1.54 5.02 30.67 0.15 -1.39 16 6 C 0.14 2.65 6.18 86.36 0.53 3.19 16 7 N -0.61 -12.83 2.97 -836.05 -2.48 -15.31 16 8 C 0.70 20.85 8.14 179.06 1.46 22.31 16 9 O -0.62 -24.65 13.19 -4.01 -0.05 -24.71 16 10 N -0.66 -18.07 5.25 -317.03 -1.66 -19.73 16 11 C 0.08 2.90 6.30 38.16 0.24 3.14 16 12 C -0.08 -2.80 9.96 22.38 0.22 -2.58 16 13 C -0.22 -9.49 9.16 22.37 0.20 -9.28 16 14 C 0.11 5.54 6.65 22.59 0.15 5.69 16 15 O -0.23 -14.39 9.76 -23.00 -0.22 -14.61 16 16 C -0.41 -24.11 9.48 67.91 0.64 -23.46 16 17 H 0.11 5.61 5.20 -2.91 -0.02 5.60 16 18 C -0.03 -1.58 5.49 84.83 0.47 -1.11 16 19 N -0.92 -57.82 13.67 21.61 0.30 -57.52 16 20 Si 1.02 43.10 29.55 68.60 2.03 45.12 16 21 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 C -0.19 -9.06 9.98 22.37 0.22 -8.84 16 25 C -0.07 -3.08 8.69 22.38 0.19 -2.89 16 26 C 0.12 1.48 6.16 86.51 0.53 2.01 16 27 C -0.12 -1.15 4.75 30.82 0.15 -1.01 16 28 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 0.20 6.67 -2.39 -0.02 0.18 16 30 H 0.06 0.31 6.40 -2.39 -0.02 0.30 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.35 1.32 7.16 -89.69 -0.64 0.68 16 34 H 0.35 1.67 8.98 -89.69 -0.81 0.87 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.51 6.99 -2.39 -0.02 1.50 16 38 H 0.08 1.44 7.74 -2.39 -0.02 1.42 16 39 H 0.42 7.85 6.31 -92.71 -0.58 7.26 16 40 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.13 5.68 5.63 -2.91 -0.02 5.66 16 42 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.11 5.32 8.06 -2.91 -0.02 5.30 16 44 H 0.13 5.47 6.22 -2.91 -0.02 5.45 16 45 H 0.09 1.05 7.73 -2.38 -0.02 1.03 16 46 H 0.08 0.85 5.64 -2.39 -0.01 0.83 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.10 0.56 6.36 -2.38 -0.02 0.54 16 Total: -1.00 -79.27 374.32 1.77 -77.50 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -1.01 Total: 29.73 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 6.00 Total: -14.13 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -4.96 Total: -98.90 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.28 Total: -39.32 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -79.27 1.77 -77.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649975007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.902 kcal (2) G-P(sol) polarization free energy of solvation -79.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds