Wall clock time and date at job start Tue Mar 31 2020 17:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46733 * 2 1 4 4 N 1.46508 * 109.46119 * 303.98359 * 3 2 1 5 5 C 1.36944 * 119.99792 * 304.78576 * 4 3 2 6 6 H 1.07998 * 119.99829 * 354.97880 * 5 4 3 7 7 C 1.38808 * 119.99720 * 174.97829 * 5 4 3 8 8 N 1.31615 * 120.00098 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47065 * 89.99624 * 9 7 5 11 11 H 1.48493 * 109.47227 * 210.00231 * 9 7 5 12 12 H 1.48505 * 109.47002 * 329.99975 * 9 7 5 13 13 C 1.53044 * 109.46194 * 184.01340 * 3 2 1 14 14 C 1.53187 * 109.31481 * 178.59687 * 13 3 2 15 15 N 1.46931 * 108.76358 * 54.65897 * 14 13 3 16 16 C 1.34768 * 120.63384 * 126.40389 * 15 14 13 17 17 O 1.21613 * 120.00108 * 5.87615 * 16 15 14 18 18 C 1.47426 * 120.00347 * 185.87354 * 16 15 14 19 19 C 1.36090 * 126.45263 * 186.76531 * 18 16 15 20 20 O 1.34255 * 106.95043 * 180.02562 * 19 18 16 21 21 C 1.34054 * 108.22733 * 0.02562 * 20 19 18 22 22 C 1.50695 * 125.37794 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.50103 * 8.59835 * 22 21 20 24 24 C 1.52998 * 117.49941 * 299.97475 * 22 21 20 25 25 N 1.29939 * 109.24243 * 359.72193 * 21 20 19 26 26 C 1.46930 * 118.73692 * 306.37657 * 15 14 13 27 27 C 1.53036 * 109.46493 * 63.95749 * 3 2 1 28 28 H 1.09005 * 109.46843 * 174.97688 * 1 2 3 29 29 H 1.08997 * 109.47271 * 294.97250 * 1 2 3 30 30 H 1.08995 * 109.47356 * 54.97607 * 1 2 3 31 31 H 1.09000 * 109.47526 * 119.99511 * 2 1 3 32 32 H 1.09001 * 109.47383 * 240.00043 * 2 1 3 33 33 H 0.96995 * 119.99899 * 124.78500 * 4 3 2 34 34 H 0.97003 * 119.99707 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.49322 * 298.56667 * 13 3 2 36 36 H 1.09003 * 109.49748 * 58.66058 * 13 3 2 37 37 H 1.08994 * 109.60268 * 294.86888 * 14 13 3 38 38 H 1.09000 * 109.58578 * 174.43228 * 14 13 3 39 39 H 1.07999 * 126.52036 * 0.02933 * 19 18 16 40 40 H 1.09000 * 115.55092 * 154.30624 * 22 21 20 41 41 H 1.09000 * 117.49636 * 359.97438 * 23 22 21 42 42 H 1.08998 * 117.50261 * 145.02002 * 23 22 21 43 43 H 1.09005 * 117.50013 * 214.98089 * 24 22 21 44 44 H 1.08994 * 117.50037 * 359.97438 * 24 22 21 45 45 H 1.08997 * 109.58797 * 293.82780 * 26 15 14 46 46 H 1.08993 * 109.58748 * 173.39238 * 26 15 14 47 47 H 1.09002 * 109.49816 * 301.33671 * 27 3 2 48 48 H 1.08997 * 109.49914 * 61.43016 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4746 2.1601 -1.1454 5 6 1.6405 1.6667 -2.4121 6 1 2.2556 0.7942 -2.5755 7 6 1.0180 2.2881 -3.4859 8 7 0.2679 3.3511 -3.2867 9 14 1.2437 1.6148 -5.2137 10 1 0.1833 0.6146 -5.4976 11 1 1.1512 2.7262 -6.1941 12 1 2.5761 0.9681 -5.3228 13 6 3.5670 1.4436 -0.1010 14 6 4.0715 2.8896 -0.1360 15 7 3.5440 3.6027 1.0353 16 6 4.3735 4.2579 1.8713 17 8 5.5559 4.3536 1.6034 18 6 3.8476 4.8587 3.1107 19 6 4.5325 5.6526 3.9782 20 8 3.6827 5.9777 4.9655 21 6 2.5020 5.3962 4.7109 22 6 1.2710 5.5069 5.5731 23 6 1.3068 6.5068 6.7306 24 6 1.3708 5.0048 7.0148 25 7 2.5848 4.7272 3.6001 26 6 2.0949 3.5884 1.2776 27 6 1.6126 2.1345 1.2964 28 1 -0.3633 -1.0238 -0.0900 29 1 -0.3633 0.4338 0.9316 30 1 -0.3634 0.5898 -0.8415 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.9828 2.9845 -1.0066 34 1 -0.1668 3.7856 -4.0372 35 1 3.9890 0.9316 0.7638 36 1 3.8716 0.9300 -1.0129 37 1 3.7237 3.3762 -1.0472 38 1 5.1611 2.8972 -0.1083 39 1 5.5633 5.9622 3.8894 40 1 0.3213 5.3684 5.0565 41 1 2.2209 7.0842 6.8688 42 1 0.3805 7.0264 6.9757 43 1 0.4865 4.5362 7.4469 44 1 2.3266 4.5939 7.3397 45 1 1.5860 4.1319 0.4816 46 1 1.8804 4.0569 2.2380 47 1 0.5259 2.1128 1.3793 48 1 2.0532 1.6159 2.1479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724890238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:32 Heat of formation + Delta-G solvation = 41.309154 kcal Electronic energy + Delta-G solvation = -29888.686567 eV Core-core repulsion = 25947.168705 eV Total energy + Delta-G solvation = -3941.517862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.64455 -39.82157 -37.94765 -37.56244 -35.26319 -34.51310 -32.48964 -30.92494 -30.24907 -29.95318 -28.97365 -25.49977 -24.58898 -23.93528 -23.40844 -22.85138 -22.73146 -21.62368 -20.76284 -19.40034 -18.29402 -17.47199 -16.99875 -16.94256 -16.84924 -15.97948 -15.63063 -15.04043 -14.92646 -14.48460 -14.08531 -13.85604 -13.78550 -13.48810 -13.33019 -13.12561 -12.80340 -12.75480 -12.46579 -12.04416 -11.93890 -11.79994 -11.59086 -11.29112 -11.12769 -11.05060 -11.03302 -10.84592 -10.73169 -10.57350 -10.45763 -10.20718 -10.09487 -9.94186 -9.72148 -9.52125 -9.10928 -9.05267 -8.82116 -8.11526 -6.87992 -5.72497 -2.99976 0.98826 1.80564 2.30957 3.18510 3.30916 3.41832 3.45346 3.51552 3.52369 3.63859 4.27204 4.41641 4.50188 4.62767 4.70299 4.80815 5.16383 5.23339 5.35935 5.41773 5.45736 5.48332 5.49330 5.60073 5.61273 5.62010 5.71068 5.79983 5.89489 5.97411 6.06468 6.16602 6.24449 6.29272 6.39645 6.52200 6.59956 6.65052 6.71487 6.78052 6.90824 6.98583 7.04300 7.20297 7.30859 7.35108 7.77236 7.81756 8.37230 8.46565 9.58055 10.15819 10.51813 11.50026 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.003228 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.096892 B = 8672.339819 C = 9194.033317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.199 3.801 4 N -0.712 5.712 5 C -0.226 4.226 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.899 3.101 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.283 1.283 13 C -0.135 4.135 14 C 0.120 3.880 15 N -0.575 5.575 16 C 0.592 3.408 17 O -0.553 6.553 18 C -0.055 4.055 19 C 0.004 3.996 20 O -0.197 6.197 21 C 0.225 3.775 22 C -0.074 4.074 23 C -0.163 4.163 24 C -0.157 4.157 25 N -0.445 5.445 26 C 0.067 3.933 27 C -0.122 4.122 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.231 0.769 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.074 0.926 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 4.153 21.561 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.108 3.892 4 N -0.354 5.354 5 C -0.358 4.358 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.305 5.305 16 C 0.378 3.622 17 O -0.432 6.432 18 C -0.174 4.174 19 C -0.069 4.069 20 O -0.083 6.083 21 C 0.018 3.982 22 C -0.092 4.092 23 C -0.200 4.200 24 C -0.195 4.195 25 N -0.175 5.175 26 C -0.055 4.055 27 C -0.161 4.161 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.218 0.782 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.247 0.753 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.157 0.843 47 H 0.093 0.907 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.556 3.777 20.965 21.455 hybrid contribution 0.467 0.110 -1.037 1.142 sum 3.022 3.886 19.928 20.527 Atomic orbital electron populations 1.21665 0.96038 0.99918 1.02164 1.21831 0.96438 0.97850 0.99792 1.19587 0.90652 0.91269 0.87713 1.42474 1.64743 1.27260 1.00919 1.19100 1.23413 1.09263 0.83975 0.91329 1.24671 1.00188 0.98345 0.97614 1.69652 1.36350 1.22024 1.30098 0.86304 0.77528 0.77742 0.85314 1.21955 1.22032 1.20913 1.22338 0.98934 0.95267 1.00996 1.21646 0.98398 0.92612 0.87442 1.47939 1.08150 1.49201 1.25188 1.16813 0.85321 0.78756 0.81297 1.90779 1.15743 1.61389 1.75322 1.21948 0.90546 1.04888 1.00066 1.25220 0.96612 0.98540 0.86533 1.84324 1.21050 1.58804 1.44118 1.25341 0.86227 0.93113 0.93532 1.20317 0.91907 1.08395 0.88628 1.23124 1.04772 0.92731 0.99410 1.23141 1.04624 0.97068 0.94660 1.70445 1.18111 1.20772 1.08152 1.22890 0.78408 0.98335 1.05901 1.22017 1.01130 0.95381 0.97564 0.94951 0.94289 0.90205 0.94294 0.92274 0.78188 0.93710 0.93528 0.90798 0.89493 0.90607 0.75288 0.83228 0.87819 0.87114 0.86995 0.88139 0.91296 0.84265 0.90730 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.39 37.16 0.35 -2.20 16 2 C -0.12 -2.18 4.66 -26.73 -0.12 -2.30 16 3 C 0.20 3.79 0.44 -131.77 -0.06 3.73 16 4 N -0.71 -16.37 3.25 -47.19 -0.15 -16.52 16 5 C -0.23 -5.84 8.35 -15.06 -0.13 -5.97 16 6 H 0.07 1.76 6.76 -52.49 -0.35 1.40 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 9 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.13 -2.50 4.78 -26.61 -0.13 -2.62 16 14 C 0.12 2.30 6.16 -3.71 -0.02 2.28 16 15 N -0.58 -10.41 2.97 -174.04 -0.52 -10.93 16 16 C 0.59 10.49 7.68 -12.52 -0.10 10.39 16 17 O -0.55 -10.84 16.34 5.27 0.09 -10.75 16 18 C -0.05 -0.81 6.72 -83.02 -0.56 -1.37 16 19 C 0.00 0.05 11.95 29.96 0.36 0.41 16 20 O -0.20 -2.12 10.40 6.50 0.07 -2.05 16 21 C 0.23 2.50 7.80 -13.08 -0.10 2.40 16 22 C -0.07 -0.56 6.33 -91.77 -0.58 -1.14 16 23 C -0.16 -0.88 10.16 -26.73 -0.27 -1.15 16 24 C -0.16 -0.88 10.23 -26.73 -0.27 -1.15 16 25 N -0.45 -6.12 7.74 -7.65 -0.06 -6.18 16 26 C 0.07 1.15 6.05 -3.71 -0.02 1.13 16 27 C -0.12 -2.07 4.74 -26.61 -0.13 -2.20 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.64 6.76 -51.93 -0.35 0.29 16 30 H 0.08 1.73 7.03 -51.93 -0.37 1.36 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 33 H 0.38 9.58 6.34 -40.82 -0.26 9.32 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.43 7.49 -51.93 -0.39 1.04 16 37 H 0.09 1.89 7.74 -51.93 -0.40 1.49 16 38 H 0.08 1.43 7.04 -51.93 -0.37 1.07 16 39 H 0.23 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.15 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.59 7.94 -51.93 -0.41 0.18 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.33 6.85 -51.93 -0.36 0.98 16 46 H 0.14 2.23 3.67 -76.94 -0.28 1.95 16 47 H 0.07 1.24 6.58 -51.93 -0.34 0.90 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -31.07 378.54 -8.24 -39.31 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.20 Total: 10.99 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.88 Total: -0.19 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.00 Total: -60.11 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.15 Total: -12.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.07 -8.24 -39.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724890238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds