Wall clock time and date at job start Tue Mar 31 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46997 * 120.00353 * 2 1 3 5 5 C 1.53002 * 109.47060 * 174.99775 * 4 2 1 6 6 N 1.46497 * 109.47725 * 179.97438 * 5 4 2 7 7 C 1.46501 * 119.99872 * 275.00789 * 6 5 4 8 8 C 1.50709 * 109.46616 * 274.98996 * 7 6 5 9 9 H 1.07999 * 119.99842 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99886 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00017 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99821 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47267 * 60.00435 * 12 10 8 14 14 H 1.48505 * 109.47088 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47363 * 299.99996 * 12 10 8 16 16 S 1.65601 * 120.00180 * 94.99211 * 6 5 4 17 17 O 1.42101 * 104.27743 * 153.93415 * 16 6 5 18 18 O 1.42106 * 104.27527 * 26.08233 * 16 6 5 19 19 C 1.81393 * 104.45208 * 270.00908 * 16 6 5 20 20 C 1.53009 * 109.47107 * 179.97438 * 19 16 6 21 21 O 1.42899 * 109.47113 * 179.97438 * 20 19 16 22 22 C 1.42903 * 113.99629 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.46726 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49371 * 243.61887 * 23 22 21 25 25 C 1.53001 * 117.49608 * 174.99962 * 23 22 21 26 26 H 1.08998 * 109.46800 * 300.00044 * 1 2 3 27 27 H 1.08992 * 109.47071 * 59.99373 * 1 2 3 28 28 H 1.08999 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46891 * 239.99926 * 2 1 3 30 30 H 1.09000 * 109.46558 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46816 * 300.00127 * 3 2 1 32 32 H 1.08998 * 109.46757 * 60.00187 * 3 2 1 33 33 H 1.08995 * 109.47292 * 55.00186 * 4 2 1 34 34 H 1.09003 * 109.47200 * 294.99126 * 4 2 1 35 35 H 1.09003 * 109.47169 * 59.99591 * 5 4 2 36 36 H 1.09000 * 109.47295 * 299.99862 * 5 4 2 37 37 H 1.09000 * 109.47476 * 34.98678 * 7 6 5 38 38 H 1.08997 * 109.47256 * 155.00035 * 7 6 5 39 39 H 0.97001 * 119.99992 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.47613 * 60.00279 * 19 16 6 41 41 H 1.08998 * 109.47064 * 299.99290 * 19 16 6 42 42 H 1.09007 * 109.46516 * 59.99805 * 20 19 16 43 43 H 1.09004 * 109.47113 * 300.00274 * 20 19 16 44 44 H 1.09002 * 109.47382 * 59.99956 * 22 21 20 45 45 H 1.09001 * 109.46938 * 299.99942 * 22 21 20 46 46 H 1.08995 * 115.55630 * 29.32572 * 23 22 21 47 47 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 48 48 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 49 49 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 50 50 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1879 6 7 4.0533 -1.5213 2.3842 7 6 4.2975 -0.7674 3.6164 8 6 5.6800 -0.1690 3.5735 9 1 6.3131 -0.3335 2.7142 10 6 6.1361 0.5893 4.6308 11 7 5.3648 0.7901 5.6770 12 14 7.8494 1.3316 4.5773 13 1 7.9580 2.2424 3.4094 14 1 8.0970 2.0958 5.8263 15 1 8.8554 0.2463 4.4539 16 16 4.3292 -3.1537 2.3439 17 8 5.3154 -3.3672 3.3445 18 8 4.6011 -3.4294 0.9767 19 6 2.7485 -3.8923 2.8402 20 6 2.8761 -5.4171 2.8411 21 8 1.6310 -5.9990 3.2326 22 6 1.6424 -7.4275 3.2668 23 6 0.2654 -7.9383 3.6956 24 6 0.1777 -8.7118 5.0128 25 6 0.0371 -9.4511 3.6807 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1370 35 1 3.9995 0.1674 1.1420 36 1 3.8532 -1.3941 0.3002 37 1 3.5593 0.0295 3.7071 38 1 4.2176 -1.4361 4.4734 39 1 5.6855 1.3239 6.4207 40 1 1.9712 -3.5936 2.1370 41 1 2.4852 -3.5488 3.8405 42 1 3.6536 -5.7161 3.5441 43 1 3.1394 -5.7603 1.8406 44 1 2.3945 -7.7680 3.9785 45 1 1.8798 -7.8128 2.2752 46 1 -0.5768 -7.2996 3.4297 47 1 1.1008 -8.8564 5.5741 48 1 -0.7224 -8.5818 5.6138 49 1 -0.9555 -9.8076 3.4053 50 1 0.8676 -10.0824 3.3650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425223088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:47 Heat of formation + Delta-G solvation = -112.365195 kcal Electronic energy + Delta-G solvation = -27593.200135 eV Core-core repulsion = 23748.169654 eV Total energy + Delta-G solvation = -3845.030481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.69089 -37.31232 -36.85955 -36.53331 -35.37625 -34.82619 -32.44456 -31.77867 -29.02971 -27.14690 -27.03669 -26.45834 -23.60531 -23.14187 -22.68932 -21.82678 -20.92661 -19.73494 -18.26995 -17.47631 -16.75846 -16.56295 -16.37368 -15.82583 -15.61858 -15.41995 -14.97025 -14.68695 -14.46775 -14.10908 -13.81685 -13.68925 -13.61134 -12.99323 -12.78850 -12.48728 -12.12759 -12.01251 -11.91722 -11.86544 -11.79471 -11.73440 -11.50970 -11.42250 -11.35130 -11.16186 -11.05684 -10.81410 -10.80450 -10.72875 -10.56709 -10.50305 -10.46039 -10.31792 -10.20948 -9.92900 -9.71355 -9.68181 -8.41868 -8.04079 -6.04002 -4.07119 0.71845 3.13499 3.35056 3.36255 3.39009 3.44473 3.63384 4.32521 4.45953 4.50528 4.54266 4.57858 4.66551 4.85997 4.91553 5.00528 5.02063 5.04667 5.10149 5.10748 5.21640 5.30775 5.31040 5.35624 5.48263 5.55879 5.57162 5.68818 5.71975 5.78255 5.78727 5.85650 5.89690 5.91833 5.97098 6.01276 6.15866 6.28309 6.35538 6.43060 6.64758 6.71726 6.98046 7.21421 7.38674 7.59846 7.93582 8.22857 8.94844 9.57482 11.04670 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.003444 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.743972 B = 8128.483005 C =10093.712205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.140 4.140 5 C 0.118 3.882 6 N -0.978 5.978 7 C 0.256 3.744 8 C -0.524 4.524 9 H 0.061 0.939 10 C 0.062 3.938 11 N -0.897 5.897 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.275 1.275 16 S 2.608 3.392 17 O -0.932 6.932 18 O -0.970 6.970 19 C -0.648 4.648 20 C 0.079 3.921 21 O -0.376 6.376 22 C 0.086 3.914 23 C -0.153 4.153 24 C -0.177 4.177 25 C -0.175 4.175 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -11.996 -7.480 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.179 4.179 5 C -0.008 4.008 6 N -0.817 5.817 7 C 0.134 3.866 8 C -0.563 4.563 9 H 0.079 0.921 10 C -0.140 4.140 11 N -0.537 5.537 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.200 1.200 16 S 2.697 3.303 17 O -0.923 6.923 18 O -0.960 6.960 19 C -0.773 4.773 20 C 0.001 3.999 21 O -0.295 6.295 22 C 0.010 3.990 23 C -0.171 4.171 24 C -0.214 4.214 25 C -0.212 4.212 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.708 -12.222 -7.448 18.491 hybrid contribution 0.273 0.417 0.360 0.614 sum -11.435 -11.806 -7.089 17.899 Atomic orbital electron populations 1.21838 0.95593 1.01395 1.01515 1.21055 0.95338 0.96671 0.98296 1.21905 1.01842 0.95644 1.01371 1.22210 0.96923 1.00235 0.98540 1.21345 0.92468 0.99957 0.87073 1.57407 1.80680 1.23378 1.20239 1.19092 0.96996 0.91686 0.78794 1.21424 0.99931 1.31237 1.03707 0.92123 1.24916 0.97663 0.96295 0.95149 1.69908 1.36682 1.39887 1.07179 0.86589 0.84631 0.79203 0.77222 1.20209 1.21251 1.20014 1.05098 0.76343 0.74457 0.74435 1.93644 1.53124 1.84668 1.60817 1.93517 1.83480 1.84876 1.34142 1.31170 1.27562 1.04503 1.14067 1.22008 0.87510 0.90441 0.99913 1.87934 1.32855 1.19125 1.89571 1.22080 0.95586 0.81285 1.00074 1.22130 0.98534 0.94312 1.02166 1.23088 1.03675 1.03941 0.90726 1.22979 1.03225 0.93522 1.01432 0.92690 0.93015 0.92974 0.91185 0.91867 0.93275 0.92498 0.92723 0.90818 0.89151 0.90212 0.94475 0.94455 0.92686 0.84885 0.84296 0.91772 0.92013 0.92802 0.92621 0.86775 0.88532 0.88544 0.88393 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.09 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.14 -1.95 5.01 -26.73 -0.13 -2.08 16 5 C 0.12 1.99 5.41 -4.04 -0.02 1.97 16 6 N -0.98 -19.52 2.70 -115.66 -0.31 -19.83 16 7 C 0.26 6.21 5.01 -5.19 -0.03 6.19 16 8 C -0.52 -14.48 9.38 -34.44 -0.32 -14.80 16 9 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 12 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 S 2.61 49.15 5.37 -107.50 -0.58 48.57 16 17 O -0.93 -21.46 16.99 -57.54 -0.98 -22.44 16 18 O -0.97 -19.13 16.53 -57.54 -0.95 -20.08 16 19 C -0.65 -9.47 6.55 37.16 0.24 -9.22 16 20 C 0.08 1.08 5.95 37.16 0.22 1.30 16 21 O -0.38 -5.11 10.34 -35.23 -0.36 -5.48 16 22 C 0.09 0.92 6.22 37.16 0.23 1.15 16 23 C -0.15 -1.44 6.06 -90.62 -0.55 -1.99 16 24 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 25 C -0.17 -1.27 10.25 -26.73 -0.27 -1.54 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.69 6.96 -51.93 -0.36 0.33 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.59 6.53 -51.93 -0.34 1.25 16 36 H 0.08 1.29 6.82 -51.93 -0.35 0.94 16 37 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.13 1.70 6.96 -51.93 -0.36 1.33 16 41 H 0.14 2.00 8.14 -51.92 -0.42 1.58 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 416.32 15.07 6.27 6.27 Total: -1.00 -32.93 416.32 -11.07 -44.00 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -9.29 Total: 0.56 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -0.59 Total: -23.14 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.42 Total: -45.04 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -2.29 Total: -48.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.58 Total: 48.57 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.93 -11.07 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425223088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.366 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds