Wall clock time and date at job start Tue Mar 31 2020 18:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46997 * 120.00353 * 2 1 3 5 5 C 1.53002 * 109.47060 * 174.99775 * 4 2 1 6 6 N 1.46497 * 109.47725 * 179.97438 * 5 4 2 7 7 C 1.46501 * 119.99872 * 275.00789 * 6 5 4 8 8 C 1.50709 * 109.46616 * 274.98996 * 7 6 5 9 9 H 1.07999 * 119.99842 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99886 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00017 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99821 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47267 * 60.00435 * 12 10 8 14 14 H 1.48505 * 109.47088 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47363 * 299.99996 * 12 10 8 16 16 S 1.65601 * 120.00180 * 94.99211 * 6 5 4 17 17 O 1.42101 * 104.27743 * 153.93415 * 16 6 5 18 18 O 1.42106 * 104.27527 * 26.08233 * 16 6 5 19 19 C 1.81393 * 104.45208 * 270.00908 * 16 6 5 20 20 C 1.53009 * 109.47107 * 179.97438 * 19 16 6 21 21 O 1.42899 * 109.47113 * 179.97438 * 20 19 16 22 22 C 1.42903 * 113.99629 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.46726 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49371 * 243.61887 * 23 22 21 25 25 C 1.53001 * 117.49608 * 174.99962 * 23 22 21 26 26 H 1.08998 * 109.46800 * 300.00044 * 1 2 3 27 27 H 1.08992 * 109.47071 * 59.99373 * 1 2 3 28 28 H 1.08999 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46891 * 239.99926 * 2 1 3 30 30 H 1.09000 * 109.46558 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46816 * 300.00127 * 3 2 1 32 32 H 1.08998 * 109.46757 * 60.00187 * 3 2 1 33 33 H 1.08995 * 109.47292 * 55.00186 * 4 2 1 34 34 H 1.09003 * 109.47200 * 294.99126 * 4 2 1 35 35 H 1.09003 * 109.47169 * 59.99591 * 5 4 2 36 36 H 1.09000 * 109.47295 * 299.99862 * 5 4 2 37 37 H 1.09000 * 109.47476 * 34.98678 * 7 6 5 38 38 H 1.08997 * 109.47256 * 155.00035 * 7 6 5 39 39 H 0.97001 * 119.99992 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.47613 * 60.00279 * 19 16 6 41 41 H 1.08998 * 109.47064 * 299.99290 * 19 16 6 42 42 H 1.09007 * 109.46516 * 59.99805 * 20 19 16 43 43 H 1.09004 * 109.47113 * 300.00274 * 20 19 16 44 44 H 1.09002 * 109.47382 * 59.99956 * 22 21 20 45 45 H 1.09001 * 109.46938 * 299.99942 * 22 21 20 46 46 H 1.08995 * 115.55630 * 29.32572 * 23 22 21 47 47 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 48 48 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 49 49 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 50 50 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1879 6 7 4.0533 -1.5213 2.3842 7 6 4.2975 -0.7674 3.6164 8 6 5.6800 -0.1690 3.5735 9 1 6.3131 -0.3335 2.7142 10 6 6.1361 0.5893 4.6308 11 7 5.3648 0.7901 5.6770 12 14 7.8494 1.3316 4.5773 13 1 7.9580 2.2424 3.4094 14 1 8.0970 2.0958 5.8263 15 1 8.8554 0.2463 4.4539 16 16 4.3292 -3.1537 2.3439 17 8 5.3154 -3.3672 3.3445 18 8 4.6011 -3.4294 0.9767 19 6 2.7485 -3.8923 2.8402 20 6 2.8761 -5.4171 2.8411 21 8 1.6310 -5.9990 3.2326 22 6 1.6424 -7.4275 3.2668 23 6 0.2654 -7.9383 3.6956 24 6 0.1777 -8.7118 5.0128 25 6 0.0371 -9.4511 3.6807 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1370 35 1 3.9995 0.1674 1.1420 36 1 3.8532 -1.3941 0.3002 37 1 3.5593 0.0295 3.7071 38 1 4.2176 -1.4361 4.4734 39 1 5.6855 1.3239 6.4207 40 1 1.9712 -3.5936 2.1370 41 1 2.4852 -3.5488 3.8405 42 1 3.6536 -5.7161 3.5441 43 1 3.1394 -5.7603 1.8406 44 1 2.3945 -7.7680 3.9785 45 1 1.8798 -7.8128 2.2752 46 1 -0.5768 -7.2996 3.4297 47 1 1.1008 -8.8564 5.5741 48 1 -0.7224 -8.5818 5.6138 49 1 -0.9555 -9.8076 3.4053 50 1 0.8676 -10.0824 3.3650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425223088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:46 Heat of formation + Delta-G solvation = -132.694351 kcal Electronic energy + Delta-G solvation = -27594.081673 eV Core-core repulsion = 23748.169654 eV Total energy + Delta-G solvation = -3845.912020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.55520 -38.59679 -38.13905 -37.62938 -36.98548 -36.27575 -34.44071 -32.91949 -30.51005 -28.29516 -27.95708 -27.90182 -24.97485 -24.66894 -23.30708 -23.23917 -21.64447 -20.76042 -19.79523 -18.86619 -18.42517 -17.99724 -17.67382 -17.15078 -16.86902 -16.50851 -16.39006 -16.04413 -15.54967 -15.36826 -14.97719 -14.70017 -14.51243 -14.39768 -14.31976 -14.04142 -13.52892 -13.22450 -13.16114 -13.04952 -12.98974 -12.93639 -12.89403 -12.87105 -12.60280 -12.40167 -12.38667 -12.26311 -12.17264 -12.05181 -11.85145 -11.77446 -11.52787 -11.43629 -11.34767 -11.29925 -11.24294 -10.56584 -10.56348 -9.71034 -8.17722 -6.28068 -0.77644 1.39421 1.42867 1.49651 1.71718 2.38697 2.42784 2.85968 3.02460 3.12528 3.19046 3.46813 3.69171 3.88182 3.89780 3.94062 4.00719 4.06641 4.10662 4.13589 4.22503 4.29653 4.38546 4.44233 4.57577 4.63656 4.64945 4.68501 4.76687 4.82024 4.87946 4.90338 4.99940 5.07131 5.13588 5.19460 5.20447 5.21514 5.22998 5.24508 5.41105 5.47410 5.56469 5.63138 5.74345 5.94514 6.04135 6.14949 6.79234 7.39761 8.89559 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.003444 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.743972 B = 8128.483005 C =10093.712205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.134 4.134 5 C 0.113 3.887 6 N -0.987 5.987 7 C 0.272 3.728 8 C -0.542 4.542 9 H 0.050 0.950 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.952 3.048 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.278 1.278 16 S 2.612 3.388 17 O -0.983 6.983 18 O -0.982 6.982 19 C -0.621 4.621 20 C 0.070 3.930 21 O -0.390 6.390 22 C 0.078 3.922 23 C -0.172 4.172 24 C -0.183 4.183 25 C -0.158 4.158 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.645 -13.028 -8.611 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.174 4.174 5 C -0.013 4.013 6 N -0.825 5.825 7 C 0.149 3.851 8 C -0.582 4.582 9 H 0.068 0.932 10 C -0.187 4.187 11 N -0.565 5.565 12 Si 0.777 3.223 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.204 1.204 16 S 2.706 3.294 17 O -0.974 6.974 18 O -0.972 6.972 19 C -0.751 4.751 20 C -0.008 4.008 21 O -0.310 6.310 22 C 0.002 3.998 23 C -0.190 4.190 24 C -0.220 4.220 25 C -0.195 4.195 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.178 0.822 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.129 0.871 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.991 -13.228 -8.616 20.445 hybrid contribution 0.612 0.633 0.682 1.113 sum -12.380 -12.595 -7.934 19.361 Atomic orbital electron populations 1.21810 0.94046 1.02114 1.02062 1.21068 0.96573 0.96154 0.97394 1.21908 1.00967 0.96119 1.01840 1.22163 0.94547 1.01375 0.99278 1.21522 0.94575 0.99073 0.86091 1.57249 1.81520 1.23957 1.19749 1.18619 0.95255 0.91227 0.80036 1.21775 1.01419 1.31542 1.03446 0.93175 1.25688 1.01254 0.96807 0.94923 1.69995 1.38228 1.40548 1.07684 0.85703 0.80148 0.78502 0.77936 1.18972 1.20209 1.20383 1.04668 0.77217 0.73979 0.73517 1.93582 1.56669 1.85179 1.61948 1.93493 1.84515 1.84774 1.34449 1.30772 1.24019 1.05395 1.14894 1.22112 0.88026 0.89434 1.01273 1.87895 1.32391 1.20953 1.89742 1.22326 0.96613 0.79705 1.01179 1.22130 0.97645 0.95654 1.03583 1.23179 1.04020 1.03888 0.90891 1.23084 1.04317 0.91997 1.00090 0.93070 0.91599 0.92177 0.90243 0.93258 0.91466 0.93371 0.91070 0.92009 0.90572 0.89415 0.95151 0.96297 0.92465 0.82250 0.83812 0.91519 0.90187 0.92257 0.91234 0.87487 0.88500 0.88011 0.87121 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.19 71.98 0.66 -1.96 16 2 C -0.09 -2.05 2.92 -10.79 -0.03 -2.08 16 3 C -0.15 -3.49 8.95 71.98 0.64 -2.85 16 4 C -0.13 -3.62 5.01 30.59 0.15 -3.46 16 5 C 0.11 3.81 5.41 86.38 0.47 4.28 16 6 N -0.99 -40.01 2.70 -519.83 -1.40 -41.41 16 7 C 0.27 13.63 5.01 85.64 0.43 14.06 16 8 C -0.54 -30.83 9.38 25.60 0.24 -30.59 16 9 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 10 C 0.01 0.71 5.46 84.65 0.46 1.18 16 11 N -0.92 -54.36 13.29 21.45 0.28 -54.07 16 12 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 16 S 2.61 98.61 5.37 -56.49 -0.30 98.30 16 17 O -0.98 -46.56 16.99 -127.65 -2.17 -48.73 16 18 O -0.98 -38.23 16.53 -127.65 -2.11 -40.34 16 19 C -0.62 -17.19 6.55 71.99 0.47 -16.72 16 20 C 0.07 1.78 5.95 71.99 0.43 2.21 16 21 O -0.39 -9.89 10.34 -148.98 -1.54 -11.43 16 22 C 0.08 1.51 6.22 71.98 0.45 1.96 16 23 C -0.17 -2.94 6.06 -10.79 -0.07 -3.00 16 24 C -0.18 -2.67 10.18 30.60 0.31 -2.36 16 25 C -0.16 -1.92 10.25 30.60 0.31 -1.61 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 30 H 0.05 1.26 6.57 -2.39 -0.02 1.24 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.65 6.96 -2.39 -0.02 1.64 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.76 6.53 -2.39 -0.02 2.75 16 36 H 0.09 2.80 6.82 -2.39 -0.02 2.79 16 37 H 0.03 1.54 8.11 -2.39 -0.02 1.53 16 38 H 0.02 1.01 7.61 -2.39 -0.02 1.00 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.16 3.61 6.96 -2.39 -0.02 3.59 16 41 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.06 1.07 7.88 -2.39 -0.02 1.05 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 48 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.37 416.32 0.60 -70.78 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.88 Total: 20.76 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 4.93 Total: -40.95 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -1.12 Total: -95.48 kcal Atomic # 8 Polarization: -94.68 SS G_CDS: -5.82 Total: -100.50 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 98.61 SS G_CDS: -0.30 Total: 98.30 kcal Total: -71.37 0.60 -70.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425223088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.919 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds